mRNA_H-elongata_contig149237.3296.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149237.3296.1
Unique NamemRNA_H-elongata_contig149237.3296.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: D8LHU2_ECTSI (2-isopropylmalate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU2_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.970e-29
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 LLFSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQADV 213
            L +S  SVTAGIDALGEVTVRVQD    R++IGKAADTDVIHASAEAYLHA+NRLLS+RGQPDKAHPQ DV
Sbjct:  444 LEYSVASVTAGIDALGEVTVRVQDELSKREYIGKAADTDVIHASAEAYLHAVNRLLSNRGQPDKAHPQKDV 514          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A6H5KEF6_9PHAE (2-isopropylmalate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF6_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.470e-29
Identity = 58/71 (81.69%), Postives = 63/71 (88.73%), Query Frame = 1
Query:    1 LLFSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQADV 213
            L +S  SVTAGIDALGEVTVRVQD    R++IGKAADTDVIHASAEAYLHA+NRLLS+RGQPDKAHPQ DV
Sbjct:  588 LEYSVASVTAGIDALGEVTVRVQDELSKREYIGKAADTDVIHASAEAYLHAVNRLLSNRGQPDKAHPQKDV 658          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A835YKD7_9STRA (2-isopropylmalate synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD7_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.750e-19
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 LLFSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQADV 213
            L +S  SVTAGIDALGEVTVRVQD + GR F G+ ADTDVI+ASA AY+ AINR+++ R  P   HPQ D 
Sbjct:  507 LEYSVDSVTAGIDALGEVTVRVQDATTGRTFFGRGADTDVIYASAMAYVDAINRIVAARAGPTPKHPQKDT 577          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A7S0EBN5_9CRYP (2-isopropylmalate synthase n=3 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0EBN5_9CRYP)

HSP 1 Score: 81.6 bits (200), Expect = 1.940e-16
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:    7 FSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQ-PDKAHPQADV 213
            +S  SVTAGIDALGEVTVR+QD   GR F+G+AADTDV+ AS  AY++A+NRL+  R     K HPQ  V
Sbjct:  577 YSVSSVTAGIDALGEVTVRLQDPRSGRVFLGRAADTDVVVASCVAYVNALNRLILQRSDLAPKLHPQLSV 646          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A7S0VM37_9CRYP (2-isopropylmalate synthase n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0VM37_9CRYP)

HSP 1 Score: 79.3 bits (194), Expect = 1.260e-15
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    7 FSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRG--QPDKAHPQ 204
            +S  SVTAGIDALGEVTVR+ D   GR F G+A++TDV+ AS  AY+HA+NRLL  R   QP K HPQ
Sbjct:  573 YSVTSVTAGIDALGEVTVRLADVKSGRTFYGRASETDVVVASTAAYVHALNRLLVQRSDLQP-KLHPQ 639          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: UPI001E1D3CFD (LOW QUALITY PROTEIN: 2-isopropylmalate synthase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3CFD)

HSP 1 Score: 76.6 bits (187), Expect = 1.120e-14
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   19 SVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQ 204
            SVT GIDALGEVTVRV D S GRQ+ G +A+TD++ ASA+AY++A+NR     G P   HPQ
Sbjct:  680 SVTKGIDALGEVTVRVIDGSTGRQYTGSSANTDIVVASAQAYINAVNRCQLSVGSPRPIHPQ 741          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A2V3J4V9_9FLOR (2-isopropylmalate synthase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4V9_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 1.520e-14
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    1 LLFSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQ 204
            L F   SVT GIDALGEV+VRV D S GRQ+ G +A+TDV+ A+A AY++AINR    R +P+  HPQ
Sbjct:  538 LEFKVSSVTEGIDALGEVSVRVTDGSDGRQYSGFSANTDVVVAAAHAYVNAINRCELTRKEPEPIHPQ 605          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: M2XVI5_GALSU (2-isopropylmalate synthase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVI5_GALSU)

HSP 1 Score: 74.3 bits (181), Expect = 7.260e-14
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   19 SVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQADV 213
            S+T GIDALGEVTVR++  +  R FIG AA+TD++ AS +AY++A+NRL      P   HPQ D 
Sbjct:  597 SITQGIDALGEVTVRIRGETDSRSFIGSAANTDIVVASVQAYVNALNRLARYAQYPKSVHPQKDA 661          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A7S2UVM3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVM3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.280e-14
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    7 FSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRG---QPDKAHPQA 207
            F+  +++ GIDA+GEVTVRV+D   G+ + G+A +TD+I +SA A+++A NR+L+ R      DK HPQ+
Sbjct:   44 FAVAAISGGIDAIGEVTVRVKDVETGQLYFGRAVNTDIIVSSAHAFMNACNRMLAARAAAEMSDKVHPQS 113          
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Match: A0A6P0TFF1_9CYAN (2-isopropylmalate synthase n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6P0TFF1_9CYAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-13
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1
Query:    7 FSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLHAINRLLSDRGQPDKAHPQ 204
            FS  SVTAGIDA+GEVT+R++   +GR F G AA TDV+ ASA AY+HA+NRL    GQ    HPQ
Sbjct:  473 FSVQSVTAGIDAMGEVTIRLRH--EGRIFSGHAASTDVVVASAHAYMHALNRLYVSVGQGVAVHPQ 536          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149237.3296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHU2_ECTSI1.970e-2981.692-isopropylmalate synthase n=1 Tax=Ectocarpus sili... [more]
A0A6H5KEF6_9PHAE3.470e-2981.692-isopropylmalate synthase n=1 Tax=Ectocarpus sp. ... [more]
A0A835YKD7_9STRA2.750e-1963.382-isopropylmalate synthase n=1 Tax=Tribonema minus... [more]
A0A7S0EBN5_9CRYP1.940e-1660.002-isopropylmalate synthase n=3 Tax=Geminigeraceae ... [more]
A0A7S0VM37_9CRYP1.260e-1561.762-isopropylmalate synthase n=2 Tax=Hemiselmis TaxI... [more]
UPI001E1D3CFD1.120e-1459.68LOW QUALITY PROTEIN: 2-isopropylmalate synthase-li... [more]
A0A2V3J4V9_9FLOR1.520e-1457.352-isopropylmalate synthase n=1 Tax=Gracilariopsis ... [more]
M2XVI5_GALSU7.260e-1452.312-isopropylmalate synthase n=1 Tax=Galdieria sulph... [more]
A0A7S2UVM3_9STRA7.280e-1445.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6P0TFF1_9CYAN1.840e-1359.092-isopropylmalate synthase n=3 Tax=Cyanobacteria T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149237contigH-elongata_contig149237:316..531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.6e-24
Seed eggNOG ortholog2880.D8LHU2
KEGG rclassRC00004,RC00470,RC02754
KEGG koko:K01649
KEGG ReactionR01213
KEGG Pathwayko00290,ko00620,ko01100,ko01110,ko01210,ko01230,map00290,map00620,map01100,map01110,map01210,map01230
KEGG ModuleM00432
EggNOG free text desc.Belongs to the alpha-IPM synthase homocitrate synthase family
EggNOG OGsCOG0119@1,KOG2367@2759
EC2.3.3.13
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description2-Isopropylmalate synthase
Ec32 orthologEc-18_000460.1
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.8144217-CDS-H-elongata_contig149237:315..5311622929882.8144217-CDS-H-elongata_contig149237:315..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149237 316..531 +
1691679194.3079605-CDS-H-elongata_contig149237:315..5311691679194.3079605-CDS-H-elongata_contig149237:315..531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149237 316..531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149237.3296.1prot_H-elongata_contig149237.3296.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149237 316..531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149237.3296.1

>prot_H-elongata_contig149237.3296.1 ID=prot_H-elongata_contig149237.3296.1|Name=mRNA_H-elongata_contig149237.3296.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
LLFSPCSVTAGIDALGEVTVRVQDTSQGRQFIGKAADTDVIHASAEAYLH
AINRLLSDRGQPDKAHPQADV*
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mRNA from alignment at H-elongata_contig149237:316..531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149237.3296.1 ID=mRNA_H-elongata_contig149237.3296.1|Name=mRNA_H-elongata_contig149237.3296.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig149237:316..531+ (Himanthalia elongata Himel1 dioecious)
CTTCTCTTCTCCCCTTGCAGTGTGACAGCCGGAATTGACGCTCTTGGCGA GGTGACGGTGCGTGTTCAAGACACGTCCCAAGGCCGACAGTTCATCGGAA AAGCGGCAGACACGGACGTGATCCACGCCTCCGCCGAGGCTTACCTCCAC GCCATCAACCGCCTCCTCAGCGATCGAGGACAGCCGGACAAGGCCCACCC CCAGGCTGATGTCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig149237:316..531+

>mRNA_H-elongata_contig149237.3296.1 ID=mRNA_H-elongata_contig149237.3296.1|Name=mRNA_H-elongata_contig149237.3296.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig149237:316..531+ (Himanthalia elongata Himel1 dioecious)
CTTCTCTTCTCCCCTTGCAGTGTGACAGCCGGAATTGACGCTCTTGGCGA
GGTGACGGTGCGTGTTCAAGACACGTCCCAAGGCCGACAGTTCATCGGAA
AAGCGGCAGACACGGACGTGATCCACGCCTCCGCCGAGGCTTACCTCCAC
GCCATCAACCGCCTCCTCAGCGATCGAGGACAGCCGGACAAGGCCCACCC
CCAGGCTGATGTCTAGCTTCTCTTCTCCCCTTGCAGTGTGACAGCCGGAA
TTGACGCTCTTGGCGAGGTGACGGTGCGTGTTCAAGACACGTCCCAAGGC
CGACAGTTCATCGGAAAAGCGGCAGACACGGACGTGATCCACGCCTCCGC
CGAGGCTTACCTCCACGCCATCAACCGCCTCCTCAGCGATCGAGGACAGC
CGGACAAGGCCCACCCCCAGGCTGATGTCTAG
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