mRNA_H-elongata_contig149197.3295.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149197.3295.1
Unique NamemRNA_H-elongata_contig149197.3295.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: Q2TUH9_FUCVE (Ribosomal protein S10 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUH9_FUCVE)

HSP 1 Score: 99.0 bits (245), Expect = 3.720e-25
Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   13 QNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFC 252
            Q P+YRCEV  LSTNL SLKL+H LLPF +N            YTGL T+I+RFTLLRS LGNKTSKDQFERR+YR++FC
Sbjct:    5 QKPIYRCEVWCLSTNLASLKLVHSLLPFFIN------------YTGLSTRIKRFTLLRSPLGNKTSKDQFERREYRIYFC 72          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A0G2RL31_TUROR (Ribosomal protein S10 n=2 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RL31_TUROR)

HSP 1 Score: 77.4 bits (189), Expect = 1.260e-16
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFC 252
            M +  N VY+CEV SLS N++SLKLL  L PF               Y GL   I+RFTLLRS LGNK SKDQFE+R++R +FC
Sbjct:    1 MSFSGNFVYKCEVWSLSANIKSLKLLFFLFPFFQK------------YRGLSINIKRFTLLRSPLGNKRSKDQFEKREHRAYFC 72          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A1L2F1J4_9PHAE (Ribosomal protein S10 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1J4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.080e-16
Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
            M + +  VYRCE+ SLS N++SLKLL LLLPF   P           Y GL   ++RFTLLRS LGNK SKDQFE+R++R +F
Sbjct:    1 MSFSRTLVYRCEIWSLSANIKSLKLLSLLLPF-FQP-----------YRGLSINVKRFTLLRSPLGNKRSKDQFEKREHRAYF 71          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: Q2TUD7_9PHAE (Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.350e-16
Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMH 246
            M   Q   Y+CEV SLSTNL +LKL  LLLP S++             TGL T+I+RFTLLRS LGNKTSKDQFER++YR +
Sbjct:    1 MSSSQYFTYKCEVWSLSTNLVNLKLWVLLLPLSLSS------------TGLSTRIKRFTLLRSPLGNKTSKDQFERQEYRSY 70          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: W5RGF1_COSCS (Ribosomal protein S10 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RGF1_COSCS)

HSP 1 Score: 75.9 bits (185), Expect = 5.630e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
            Y ++ +Y C+V S+ST+ +SL  L LLLP S++P            TGL TKI+RFTLLRS LGNK +KDQFERR+YR +F
Sbjct:    4 YKKSIMYICKVWSVSTDFKSLNSLSLLLPLSISP------------TGLSTKIKRFTLLRSPLGNKAAKDQFERREYRSYF 72          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A6N3ISS5_9PHAE (Ribosomal protein S10 n=7 Tax=Ecklonia TaxID=105406 RepID=A0A6N3ISS5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.100e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
            Y +N +Y C+V S ST+L+SL  L LLLP            + ++ TGL T+I+RFTLLRS LGNKT+KDQFERR+YR +F
Sbjct:    4 YQKNIIYICKVWSASTDLKSLNFLLLLLP------------LFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYF 72          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A6N3IW20_9PHAE (Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=35120 RepID=A0A6N3IW20_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.560e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
            Y +N  Y C+V S+ST+L+SL  L LLLP            + ++ TGL T+I+RFTLLRS LGNKT+KDQFERR+YR +F
Sbjct:    4 YQKNITYICKVWSVSTDLKSLNFLLLLLP------------LFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYF 72          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A8F0FCY5_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCY5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.220e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
            + Y ++ +Y C+V S+ST+ +SL  L LLLP S++             TGL TKI+RFTLLRS LGNK++KDQFERR+YR +F
Sbjct:    2 LQYKKSIIYICKVWSVSTDFKSLNSLALLLPLSISS------------TGLSTKIKRFTLLRSPLGNKSAKDQFERREYRSYF 72          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A4D6E534_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E534_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.040e-15
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query:    7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
            Y ++ +Y C+V S+ST+ +SL  L LLLP S+              TGL TKI+RFTLLRS LGNK SKDQFERR+YR +F
Sbjct:   13 YKKSIIYICKVWSVSTDFKSLNYLSLLLPLSIYS------------TGLSTKIKRFTLLRSPLGNKASKDQFERREYRSYF 81          
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: E6ZET7_ECTSI (Ribosomal protein S10 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.230e-15
Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFCCQ 258
            Y +N +Y C++ + STNL SLK+  LLLP S               TGL TKI+RFTLLRS LGNK SKDQFERR+Y+  F  Q
Sbjct:    4 YNKNIIYTCKIWASSTNLNSLKIYSLLLPLSCIS------------TGLPTKIKRFTLLRSPLGNKRSKDQFERREYKSFFSFQ 75          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2TUH9_FUCVE3.720e-2565.00Ribosomal protein S10 n=3 Tax=Fucus TaxID=3011 Rep... [more]
A0A0G2RL31_TUROR1.260e-1652.38Ribosomal protein S10 n=2 Tax=Sargassaceae TaxID=3... [more]
A0A1L2F1J4_9PHAE4.080e-1653.01Ribosomal protein S10 n=1 Tax=Coccophora langsdorf... [more]
Q2TUD7_9PHAE5.350e-1656.10Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31... [more]
W5RGF1_COSCS5.630e-1653.09Ribosomal protein S10 n=1 Tax=Costaria costata Tax... [more]
A0A6N3ISS5_9PHAE1.100e-1553.09Ribosomal protein S10 n=7 Tax=Ecklonia TaxID=10540... [more]
A0A6N3IW20_9PHAE1.560e-1553.09Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=... [more]
A0A8F0FCY5_9PHAE3.220e-1550.60Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2... [more]
A0A4D6E534_9PHAE4.040e-1553.09Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=... [more]
E6ZET7_ECTSI4.230e-1552.38Ribosomal protein S10 n=2 Tax=Ectocarpus siliculos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149197contigH-elongata_contig149197:742..1038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size258
Cds size258
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.7575605-CDS-H-elongata_contig149197:741..8741622929882.7575605-CDS-H-elongata_contig149197:741..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149197 742..874 -
1691679194.2893038-CDS-H-elongata_contig149197:741..8741691679194.2893038-CDS-H-elongata_contig149197:741..874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149197 742..874 -
1622929882.773377-CDS-H-elongata_contig149197:913..10381622929882.773377-CDS-H-elongata_contig149197:913..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149197 914..1038 -
1691679194.2979503-CDS-H-elongata_contig149197:913..10381691679194.2979503-CDS-H-elongata_contig149197:913..1038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149197 914..1038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149197.3295.1prot_H-elongata_contig149197.3295.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149197 742..1038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149197.3295.1

>prot_H-elongata_contig149197.3295.1 ID=prot_H-elongata_contig149197.3295.1|Name=mRNA_H-elongata_contig149197.3295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTG
LLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFCCQ
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mRNA from alignment at H-elongata_contig149197:742..1038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149197.3295.1 ID=mRNA_H-elongata_contig149197.3295.1|Name=mRNA_H-elongata_contig149197.3295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig149197:742..1038- (Himanthalia elongata Himel1 dioecious)
ATGGGTTATTTCCAAAATCCTGTTTATAGGTGTGAAGTATTATCTTTATC TACTAATTTAGAATCTTTAAAATTGTTACATCTTTTATTACCTTTCTCTG TTAACCCTTTGAAACTGGATTTCAAGTTTTATATTGAATTTAGAATATAA AAAAACAGATCGAGTTCCATAGGGGTTAATTATACGGGATTATTGACAAA GATTCGAAGATTTACATTACTACGCTCTGCTTTAGGAAATAAAACATCTA AAGATCAATTTGAAAGAAGGAAATACCGTATGCATTTTTGTTGCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig149197:742..1038-

>mRNA_H-elongata_contig149197.3295.1 ID=mRNA_H-elongata_contig149197.3295.1|Name=mRNA_H-elongata_contig149197.3295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig149197:742..1038- (Himanthalia elongata Himel1 dioecious)
ATGGGTTATTTCCAAAATCCTGTTTATAGGTGTGAAGTATTATCTTTATC
TACTAATTTAGAATCTTTAAAATTGTTACATCTTTTATTACCTTTCTCTG
TTAACCCTTTGAAACTGGATTTCAAATGGGTTATTTCCAAAATCCTGTTT
ATAGGTGTGAAGTATTATCTTTATCTACTAATTTAGAATCTTTAAAATTG
TTACATCTTTTATTACCTTTCTCTGTTAACCCTTTGAAACTGGATTTCAA
TTCCATAGGGGTTAATTATACGGGATTATTGACAAAGATTCGAAGATTTA
CATTACTACGCTCTGCTTTAGGAAATAAAACATCTAAAGATCAATTTGAA
AGAAGGAAATACCGTATGCATTTTTGTTGCCAATTCCATAGGGGTTAATT
ATACGGGATTATTGACAAAGATTCGAAGATTTACATTACTACGCTCTGCT
TTAGGAAATAAAACATCTAAAGATCAATTTGAAAGAAGGAAATACCGTAT
GCATTTTTGTTGCCAA
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