mRNA_H-elongata_contig149197.3295.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: Q2TUH9_FUCVE (Ribosomal protein S10 n=3 Tax=Fucus TaxID=3011 RepID=Q2TUH9_FUCVE) HSP 1 Score: 99.0 bits (245), Expect = 3.720e-25 Identity = 52/80 (65.00%), Postives = 60/80 (75.00%), Query Frame = 1
Query: 13 QNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFC 252
Q P+YRCEV LSTNL SLKL+H LLPF +N YTGL T+I+RFTLLRS LGNKTSKDQFERR+YR++FC
Sbjct: 5 QKPIYRCEVWCLSTNLASLKLVHSLLPFFIN------------YTGLSTRIKRFTLLRSPLGNKTSKDQFERREYRIYFC 72
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A0G2RL31_TUROR (Ribosomal protein S10 n=2 Tax=Sargassaceae TaxID=3014 RepID=A0A0G2RL31_TUROR) HSP 1 Score: 77.4 bits (189), Expect = 1.260e-16 Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFC 252
M + N VY+CEV SLS N++SLKLL L PF Y GL I+RFTLLRS LGNK SKDQFE+R++R +FC
Sbjct: 1 MSFSGNFVYKCEVWSLSANIKSLKLLFFLFPFFQK------------YRGLSINIKRFTLLRSPLGNKRSKDQFEKREHRAYFC 72
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A1L2F1J4_9PHAE (Ribosomal protein S10 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1J4_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 4.080e-16 Identity = 44/83 (53.01%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
M + + VYRCE+ SLS N++SLKLL LLLPF P Y GL ++RFTLLRS LGNK SKDQFE+R++R +F
Sbjct: 1 MSFSRTLVYRCEIWSLSANIKSLKLLSLLLPF-FQP-----------YRGLSINVKRFTLLRSPLGNKRSKDQFEKREHRAYF 71
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: Q2TUD7_9PHAE (Ribosomal protein S10 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUD7_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.350e-16 Identity = 46/82 (56.10%), Postives = 55/82 (67.07%), Query Frame = 1
Query: 1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMH 246
M Q Y+CEV SLSTNL +LKL LLLP S++ TGL T+I+RFTLLRS LGNKTSKDQFER++YR +
Sbjct: 1 MSSSQYFTYKCEVWSLSTNLVNLKLWVLLLPLSLSS------------TGLSTRIKRFTLLRSPLGNKTSKDQFERQEYRSY 70
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: W5RGF1_COSCS (Ribosomal protein S10 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RGF1_COSCS) HSP 1 Score: 75.9 bits (185), Expect = 5.630e-16 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
Y ++ +Y C+V S+ST+ +SL L LLLP S++P TGL TKI+RFTLLRS LGNK +KDQFERR+YR +F
Sbjct: 4 YKKSIMYICKVWSVSTDFKSLNSLSLLLPLSISP------------TGLSTKIKRFTLLRSPLGNKAAKDQFERREYRSYF 72
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A6N3ISS5_9PHAE (Ribosomal protein S10 n=7 Tax=Ecklonia TaxID=105406 RepID=A0A6N3ISS5_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.100e-15 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
Y +N +Y C+V S ST+L+SL L LLLP + ++ TGL T+I+RFTLLRS LGNKT+KDQFERR+YR +F
Sbjct: 4 YQKNIIYICKVWSASTDLKSLNFLLLLLP------------LFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYF 72
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A6N3IW20_9PHAE (Ribosomal protein S10 n=11 Tax=Lessoniaceae TaxID=35120 RepID=A0A6N3IW20_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.560e-15 Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query: 7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
Y +N Y C+V S+ST+L+SL L LLLP + ++ TGL T+I+RFTLLRS LGNKT+KDQFERR+YR +F
Sbjct: 4 YQKNITYICKVWSVSTDLKSLNFLLLLLP------------LFISSTGLSTRIKRFTLLRSPLGNKTAKDQFERREYRSYF 72
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A8F0FCY5_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariales TaxID=2886 RepID=A0A8F0FCY5_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 3.220e-15 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 1 MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
+ Y ++ +Y C+V S+ST+ +SL L LLLP S++ TGL TKI+RFTLLRS LGNK++KDQFERR+YR +F
Sbjct: 2 LQYKKSIIYICKVWSVSTDFKSLNSLALLLPLSISS------------TGLSTKIKRFTLLRSPLGNKSAKDQFERREYRSYF 72
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: A0A4D6E534_9PHAE (Ribosomal protein S10 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E534_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 4.040e-15 Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHF 249
Y ++ +Y C+V S+ST+ +SL L LLLP S+ TGL TKI+RFTLLRS LGNK SKDQFERR+YR +F
Sbjct: 13 YKKSIIYICKVWSVSTDFKSLNYLSLLLPLSIYS------------TGLSTKIKRFTLLRSPLGNKASKDQFERREYRSYF 81
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Match: E6ZET7_ECTSI (Ribosomal protein S10 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET7_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 4.230e-15 Identity = 44/84 (52.38%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 7 YFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGLLTKIRRFTLLRSALGNKTSKDQFERRKYRMHFCCQ 258
Y +N +Y C++ + STNL SLK+ LLLP S TGL TKI+RFTLLRS LGNK SKDQFERR+Y+ F Q
Sbjct: 4 YNKNIIYTCKIWASSTNLNSLKIYSLLLPLSCIS------------TGLPTKIKRFTLLRSPLGNKRSKDQFERREYKSFFSFQ 75 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149197.3295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig149197.3295.1 >prot_H-elongata_contig149197.3295.1 ID=prot_H-elongata_contig149197.3295.1|Name=mRNA_H-elongata_contig149197.3295.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp MGYFQNPVYRCEVLSLSTNLESLKLLHLLLPFSVNPLKLDFNSIGVNYTGback to top mRNA from alignment at H-elongata_contig149197:742..1038- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig149197.3295.1 ID=mRNA_H-elongata_contig149197.3295.1|Name=mRNA_H-elongata_contig149197.3295.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig149197:742..1038- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig149197:742..1038- >mRNA_H-elongata_contig149197.3295.1 ID=mRNA_H-elongata_contig149197.3295.1|Name=mRNA_H-elongata_contig149197.3295.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig149197:742..1038- (Himanthalia elongata Himel1 dioecious)back to top |