mRNA_H-elongata_contig149168.3292.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig149168.3292.1
Unique NamemRNA_H-elongata_contig149168.3292.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig149168.3292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig149168contigH-elongata_contig149168:822..1368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size518
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig149168.3292.1prot_H-elongata_contig149168.3292.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig149168 1016..1368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.4102826-UTR-H-elongata_contig149168:821..10151622929882.4102826-UTR-H-elongata_contig149168:821..1015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149168 822..1015 +
1691679194.1289194-UTR-H-elongata_contig149168:821..10151691679194.1289194-UTR-H-elongata_contig149168:821..1015Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig149168 822..1015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929882.4237468-CDS-H-elongata_contig149168:1015..11081622929882.4237468-CDS-H-elongata_contig149168:1015..1108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149168 1016..1108 +
1691679194.1370537-CDS-H-elongata_contig149168:1015..11081691679194.1370537-CDS-H-elongata_contig149168:1015..1108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149168 1016..1108 +
1622929882.435052-CDS-H-elongata_contig149168:1137..13681622929882.435052-CDS-H-elongata_contig149168:1137..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149168 1138..1368 +
1691679194.1451337-CDS-H-elongata_contig149168:1137..13681691679194.1451337-CDS-H-elongata_contig149168:1137..1368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig149168 1138..1368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig149168.3292.1

>prot_H-elongata_contig149168.3292.1 ID=prot_H-elongata_contig149168.3292.1|Name=mRNA_H-elongata_contig149168.3292.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MCDHTYQSKDQPDSVASCLWSATTHEFFPVPTGSAVSSRVILCYFSQLRL
NMVHTPGILSILSFSATASISTVNRHRANPDLIRSRSCVPMTFTTESPPA
LIQQSSS*
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mRNA from alignment at H-elongata_contig149168:822..1368+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig149168.3292.1 ID=mRNA_H-elongata_contig149168.3292.1|Name=mRNA_H-elongata_contig149168.3292.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=547bp|location=Sequence derived from alignment at H-elongata_contig149168:822..1368+ (Himanthalia elongata Himel1 dioecious)
GCCCCAACGACGTATTGCAGACGACGTGCTACAATGAATGCAAGATACGG
TGTGATATCTCTATGATTACCTCTTCGTGTTGTTGTCAATCGTGGGGGTA
CACTTCCGCAGTCAAAGTCCTGGAAAGTTGAATTGGGCTTCGCCTGGCTG
CACCAGATACGTTTTGAGATCTCTGGCTTAGCATAGTCTTCCTTATGTGT
GATCACACATATCAGAGTAAGGATCAACCGGATTCGGTTGCCTCCTGTTT
GTGGTCAGCTACAACACACGAATTTTTCCCGGTCCCCGTTTGCGCATGAG
AATTTGGTCTTGCGAGACGGGTTCGGCCGTCTCTTCCCGCGTCATCCTCT
GCTATTTCTCTCAACTCAGGCTGAATATGGTGCATACTCCCGGGATCCTC
TCGATTCTCTCGTTTTCCGCGACGGCGTCCATTTCTACCGTCAATCGCCA
TCGGGCCAATCCCGATTTGATCAGGTCACGCAGTTGCGTACCGATGACGT
TTACCACCGAGAGTCCGCCGGCACTGATCCAGCAGTCCTCAAGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig149168:822..1368+

>mRNA_H-elongata_contig149168.3292.1 ID=mRNA_H-elongata_contig149168.3292.1|Name=mRNA_H-elongata_contig149168.3292.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig149168:822..1368+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGATCACACATATCAGAGTAAGGATCAACCGGATTCGGTTGCCTC
CTGTTTGTGGTCAGCTACAACACACGAATTTTTCCCGGTCCCCATGTGTG
ATCACACATATCAGAGTAAGGATCAACCGGATTCGGTTGCCTCCTGTTTG
TGGTCAGCTACAACACACGAATTTTTCCCGGTCCCCACGGGTTCGGCCGT
CTCTTCCCGCGTCATCCTCTGCTATTTCTCTCAACTCAGGCTGAATATGG
TGCATACTCCCGGGATCCTCTCGATTCTCTCGTTTTCCGCGACGGCGTCC
ATTTCTACCGTCAATCGCCATCGGGCCAATCCCGATTTGATCAGGTCACG
CAGTTGCGTACCGATGACGTTTACCACCGAGAGTCCGCCGGCACTGATCC
AGCAGTCCTCAAGTTAGACGGGTTCGGCCGTCTCTTCCCGCGTCATCCTC
TGCTATTTCTCTCAACTCAGGCTGAATATGGTGCATACTCCCGGGATCCT
CTCGATTCTCTCGTTTTCCGCGACGGCGTCCATTTCTACCGTCAATCGCC
ATCGGGCCAATCCCGATTTGATCAGGTCACGCAGTTGCGTACCGATGACG
TTTACCACCGAGAGTCCGCCGGCACTGATCCAGCAGTCCTCAAGTTAG
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