mRNA_H-elongata_contig14897.3280.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14897.3280.1
Unique NamemRNA_H-elongata_contig14897.3280.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A1U8FNI4_CAPAN (Cytochrome b n=26 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8FNI4_CAPAN)

HSP 1 Score: 387 bits (993), Expect = 1.040e-130
Identity = 197/328 (60.06%), Postives = 230/328 (70.12%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGTYK*TIKK---------------------------------------------------PIKF*LVI*YYY*V----GGI-----MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP+++EAF+SV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG    ++ +                                                   P+   + +  ++ +    G I     + I KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VPAGL+ VPF+ENVNKFQNPFRRPVA+T+FLIGT VA+WLGIGA LPI K+LTLGLF
Sbjct:  131 TGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLIVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 458
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: UPI0009056307 (uncharacterized protein LOC109235942 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009056307)

HSP 1 Score: 385 bits (989), Expect = 8.260e-130
Identity = 199/328 (60.67%), Postives = 228/328 (69.51%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGT--------------------------------------------------YK*-TIKKPIKF*LVI*YYY*V----GGI-----MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP+++EAF+SV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG                                                   Y   T   P+   + +  ++ +    G I     + I KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VPAGL+TVPF+ENVNKFQNPFRRPVA  +FLIGT VA+WLGIGA LPI K+LTLGLF
Sbjct:  152 TGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFRILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVAKIVFLIGTAVALWLGIGATLPIDKSLTLGLF 479
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A6P4CAP1_ARADU (Cytochrome b n=3 Tax=50 kb inversion clade TaxID=2231393 RepID=A0A6P4CAP1_ARADU)

HSP 1 Score: 377 bits (969), Expect = 5.160e-129
Identity = 194/324 (59.88%), Postives = 226/324 (69.75%), Query Frame = 2 
Query:   14 MTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGT--------------------------------------------------YK*-TIKKPIKF*LVI*YYY*V----GGI-----MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            MTFYYRP+++EAF+SV+YIMTE NFGWLIRS+HRWSAS+MVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG                                                   Y   T   P+   + +  ++ +    G I     + I KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VPAGL+TVPF+ENVNKFQNPFRRPV++TIFLIGT VA+WLG+GA LPI K+LTLGLF
Sbjct:    1 MTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASVMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDHIGYWAVKIVTGVPEAIPGIGSSVVELLRGSASVGQSTLTCFYSLHTFVLPLLTAVFMLMHFPMIRKQGWINKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVSTTIFLIGTAVALWLGVGATLPIEKSLTLGLF 324
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A251V3R3_HELAN (Cytochrome b n=45 Tax=asterids TaxID=71274 RepID=A0A251V3R3_HELAN)

HSP 1 Score: 380 bits (975), Expect = 4.160e-128
Identity = 200/352 (56.82%), Postives = 229/352 (65.06%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGTYK*T-----------------------IKKPIKF*L-------------------------------------------VI*YYY*VGGIMSIL------------------KKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP++++AF+SV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG    +                       I  P+   L                                           V  +Y     +M I+                  KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VPAGL+TVPF+ENVNKFQNPFRRPVA+T+FLIGT VA+WLGIGA LPI K+LTLGLF
Sbjct:   98 TGFAMTFYYRPTVTDAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGISVSSFYSCSSRMMKIIMSGSSGGWIYKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 449
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: UPI00098E7ECC (uncharacterized protein LOC109846754 n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E7ECC)

HSP 1 Score: 386 bits (991), Expect = 7.940e-127
Identity = 199/328 (60.67%), Postives = 228/328 (69.51%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGT--------------------------------------------------YK*-TIKKPIKF*LVI*YYY*V----GGI-----MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP+++EAFSSV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV L V T SFG                                                   Y   T   P+   + +  ++ +    G I     + I KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VP GL+TVPF+ENVNKFQNPFRRPVA+T+FLIGT VA+WLGIGA LPI K+LTLGLF
Sbjct:  410 TGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLGVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGWIHKNSPIPITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 737
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A8B8K3R5_ABRPR (Cytochrome b n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8K3R5_ABRPR)

HSP 1 Score: 384 bits (987), Expect = 4.220e-126
Identity = 199/328 (60.67%), Postives = 227/328 (69.21%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGT--------------------------------------------------YK*-TIKKPIKF*LVI*YYY*V----GGIMS-----ILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP+++EAF+SV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG                                                   Y   T   P+   + +  ++ +    G I       I KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VP GL+TVPF+ENVNKFQNPFRRPVA+TIFLIGT VA+WLGIGA LPI K+L LGLF
Sbjct:  421 TGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSLVELLRGSSSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGWIYKNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPMGLLTVPFLENVNKFQNPFRRPVATTIFLIGTIVALWLGIGATLPIEKSLILGLF 748
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A6P5Y5R8_DURZI (Cytochrome b n=903 Tax=cellular organisms TaxID=131567 RepID=A0A6P5Y5R8_DURZI)

HSP 1 Score: 387 bits (995), Expect = 4.830e-125
Identity = 201/327 (61.47%), Postives = 228/327 (69.72%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGTYK*T-----------------------IKKPIKF*L--------------------VI*YYY*VGGIMSIL----------------KKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP+++EAF+SV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG    +                       I  P+   L                    V+     V  +M  L                KKPDL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VPAGL+TVPF+ENVNKFQNPFRRPVA+T+FLIGT VA+WLGIGA LPI K+LTLGLF
Sbjct:  638 TGFAMTFYYRPTVTEAFTSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISEKFTYPNNKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 964
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: T1L7H0_TRIUA (Cytochrome b n=1 Tax=Triticum urartu TaxID=4572 RepID=T1L7H0_TRIUA)

HSP 1 Score: 365 bits (938), Expect = 2.310e-124
Identity = 184/297 (61.95%), Postives = 213/297 (71.72%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGTYK*T-----------------------IKKPIKF*L----------VI*YYY*VGGIMSIL------------KKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLG 757
            TGFAMTFYYRP+++EAFSSV+YIMTE NFGWLIRS+HRWSASMMVLM+ILHVFRVYLTGGFKKPRELTWVTGV LAV T SFG    +                       I  P+   L          +  +Y     ++ +L            +K DL DP LRAKLAKGMGHNYYGEPAWPND+ Y+FP+ ILGT    +GLAV+EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VP GL+TVPF+ENVNKFQNPFRRPVA+T+FLIGT VA+WLG
Sbjct:   24 TGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQNPFRRPVATTVFLIGTVVALWLG 320
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A1U8FQW9_CAPAN (Cytochrome b n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8FQW9_CAPAN)

HSP 1 Score: 370 bits (950), Expect = 1.930e-120
Identity = 189/309 (61.17%), Postives = 222/309 (71.84%), Query Frame = 2 
Query:    2 TGFAMTFYYRPSISEAFSSVEYIMTEVNFGWLIRSIHRWSASMMVLMLILHVFRVYLTGGFKKPRELTWVTGVTLAVTTVSFGTYK*TIKK--------------PIKF*LVI*---------------------YYY*VGGIM------SILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            TGFAMTFYYRP+I+EAF+SV+YIMTE NFGWLIRS+H+WSASMMVLM+ILHVF VYLT GFKKPR+LTWVTGV LAV T SFG    ++ +              P    +++                          +GG +       I KKPDL D  LRAKLAKGMGHNYYGEPAW  D+ Y+F + ILGT    +GLA++EPS +GE A+PFATPLEILPEWYFFP F +LR +PNKLLGVL M +VPAGL+ VPF+ENVNKFQNPFRRPVA+T+FLIGT VA+WLGIGA LPI K+LTLGLF
Sbjct:  451 TGFAMTFYYRPTITEAFASVQYIMTEANFGWLIRSVHQWSASMMVLMMILHVFCVYLTVGFKKPRKLTWVTGVVLAVLTASFGVTGYSLPRDQIGYWAVKIVTGVPDAIPVIVANGSAGSPIIDGSKTAKPTLHAISSSLGGWIYKNSPIPITKKPDLNDLVLRAKLAKGMGHNYYGEPAWRKDLLYIFSVVILGTIACNVGLAILEPSMIGEPADPFATPLEILPEWYFFPAFQILRTVPNKLLGVLLMVSVPAGLLIVPFLENVNKFQNPFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 759
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BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Match: A0A1L2F1Q1_9PHAE (Cytochrome b6-f complex subunit 4 n=58 Tax=Stramenopiles TaxID=33634 RepID=A0A1L2F1Q1_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 2.470e-112
Identity = 155/160 (96.88%), Postives = 160/160 (100.00%), Query Frame = 2 
Query:  326 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLPISKALTLGLF 805
            MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMA+VPAGLITVPFIENVNKFQNPFRRPVAST+FLIGTF+AIWLGIGACLPI+KALTLGLF
Sbjct:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPAGLITVPFIENVNKFQNPFRRPVASTVFLIGTFIAIWLGIGACLPINKALTLGLF 160
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14897.3280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1U8FNI4_CAPAN1.040e-13060.06Cytochrome b n=26 Tax=Mesangiospermae TaxID=143718... [more]
UPI00090563078.260e-13060.67uncharacterized protein LOC109235942 n=1 Tax=Nicot... [more]
A0A6P4CAP1_ARADU5.160e-12959.88Cytochrome b n=3 Tax=50 kb inversion clade TaxID=2... [more]
A0A251V3R3_HELAN4.160e-12856.82Cytochrome b n=45 Tax=asterids TaxID=71274 RepID=A... [more]
UPI00098E7ECC7.940e-12760.67uncharacterized protein LOC109846754 n=1 Tax=Aspar... [more]
A0A8B8K3R5_ABRPR4.220e-12660.67Cytochrome b n=1 Tax=Abrus precatorius TaxID=3816 ... [more]
A0A6P5Y5R8_DURZI4.830e-12561.47Cytochrome b n=903 Tax=cellular organisms TaxID=13... [more]
T1L7H0_TRIUA2.310e-12461.95Cytochrome b n=1 Tax=Triticum urartu TaxID=4572 Re... [more]
A0A1U8FQW9_CAPAN1.930e-12061.17Cytochrome b n=1 Tax=Capsicum annuum TaxID=4072 Re... [more]
A0A1L2F1Q1_9PHAE2.470e-11296.88Cytochrome b6-f complex subunit 4 n=58 Tax=Stramen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14897contigH-elongata_contig14897:2408..3519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue1.9e-86
Seed eggNOG ortholog2880.D1J799
Preferred nameCYTB
KEGG koko:K00412,ko:K02637
KEGG Pathwayko00190,ko00195,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map00195,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152,M00162
GOsGO:0000003,GO:0001666,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0007275,GO:0007276,GO:0007283,GO:0007584,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009628,GO:0009636,GO:0009651,GO:0009719,GO:0009725,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0014070,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016021,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019953,GO:0020037,GO:0022414,GO:0022900,GO:0022904,GO:0031090,GO:0031099,GO:0031100,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031667,GO:0031966,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032592,GO:0032991,GO:0033273,GO:0033590,GO:0033762,GO:0034220,GO:0034357,GO:0034641,GO:0036293,GO:0036296,GO:0042221,GO:0042493,GO:0042538,GO:0042651,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044703,GO:0044877,GO:0045275,GO:0045333,GO:0045471,GO:0046034,GO:0046483,GO:0046677,GO:0046686,GO:0046688,GO:0046689,GO:0046906,GO:0048037,GO:0048038,GO:0048039,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051592,GO:0051704,GO:0055035,GO:0055085,GO:0055086,GO:0055093,GO:0055114,GO:0070069,GO:0070469,GO:0070482,GO:0071704,GO:0072521,GO:0097159,GO:0097305,GO:0098573,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901363,GO:1901564,GO:1901652,GO:1901698,GO:1901700,GO:1902494,GO:1902600,GO:1990204
EggNOG free text desc.electron transfer activity
EggNOG OGsCOG1290@1,KOG4663@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko03029
Hectar predicted targeting categorysignal anchor
Exons2
Model size808
Cds size483
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14897.3280.1prot_H-elongata_contig14897.3280.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14897 3037..3519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.5103285-UTR-H-elongata_contig14897:2407..26571622929881.5103285-UTR-H-elongata_contig14897:2407..2657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14897 2408..2657 +
1691679193.8522744-UTR-H-elongata_contig14897:2407..26571691679193.8522744-UTR-H-elongata_contig14897:2407..2657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14897 2408..2657 +
1622929881.5286722-UTR-H-elongata_contig14897:2961..30361622929881.5286722-UTR-H-elongata_contig14897:2961..3036Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14897 2962..3036 +
1691679193.8653822-UTR-H-elongata_contig14897:2961..30361691679193.8653822-UTR-H-elongata_contig14897:2961..3036Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14897 2962..3036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929881.5457454-CDS-H-elongata_contig14897:3036..35191622929881.5457454-CDS-H-elongata_contig14897:3036..3519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 3037..3519 +
1691679193.8779898-CDS-H-elongata_contig14897:3036..35191691679193.8779898-CDS-H-elongata_contig14897:3036..3519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14897 3037..3519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14897.3280.1

>prot_H-elongata_contig14897.3280.1 ID=prot_H-elongata_contig14897.3280.1|Name=mRNA_H-elongata_contig14897.3280.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=161bp
MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDIFYMFPICILGTFVI
VIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLA
MAAVPAGLITVPFIENVNKFQNPFRRPVASTIFLIGTFVAIWLGIGACLP
ISKALTLGLF*
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mRNA from alignment at H-elongata_contig14897:2408..3519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14897.3280.1 ID=mRNA_H-elongata_contig14897.3280.1|Name=mRNA_H-elongata_contig14897.3280.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-elongata_contig14897:2408..3519+ (Himanthalia elongata Himel1 dioecious)
AACAGGATTTGCAATGACATTTTATTATAGACCAAGTATTAGTGAAGCTT
TTTCATCGGTTGAATATATTATGACTGAAGTTAATTTTGGTTGGTTAATA
CGTTCTATCCACCGATGGTCTGCAAGTATGATGGTTCTTATGCTAATTTT
ACATGTTTTTCGTGTATACTTAACAGGTGGATTTAAGAAACCTCGCGAAT
TAACATGGGTTACTGGTGTAACTCTAGCTGTAACTACAGTTTCTTTTGGT
GTAACAGGTTATTCTTTACCTTGGGACCAAGTAGGATTTTGGGCCTGTAA
AATTGTAACTGGGGTACCTGAAGCAGTTCCTATTATTGGACCACCAATAG
TTCAATTACTACGTGGAGGAGTTAGTGTAGGTCAAAGTACTTTAACACGT
TTTTATAGTGCACACACTTTTGTTTTACCTTTAGTTGCGGCAGCTTTAAT
GATTACACATTTTTTAATGATAAGAAAACAAGGTATTTCAGGACCTCTAT
AACTAATCTAGTTATTGATATTAAATAGAATACAATTTTATATATAAACT
ATAGACTTATAAATAAACAATTAAAAAACCAATAAAATTTTAACTTGTAA
TATAATACTATTATTAAGTAGGAGGAATTATGTCAATATTAAAAAAACCA
GATTTAACTGATCCTAAATTAAGAGCTAAACTAGCAAAAGGTATGGGACA
TAATTATTATGGTGAGCCAGCTTGGCCGAATGATATTTTTTATATGTTTC
CTATTTGTATTCTAGGAACGTTTGTAATAGTTATTGGTTTAGCTGTAATG
GAACCATCAGCTTTAGGAGAAAAAGCTAATCCATTCGCTACTCCTTTAGA
AATTTTACCTGAATGGTACTTTTTTCCAACTTTTAATCTATTAAGGGTTT
TACCAAATAAATTATTAGGTGTTTTAGCAATGGCTGCTGTACCAGCAGGA
CTTATAACAGTCCCATTTATTGAAAACGTTAATAAATTTCAAAACCCATT
CCGTCGACCAGTTGCTTCAACTATATTTTTAATAGGAACATTTGTTGCTA
TCTGGTTAGGTATTGGTGCTTGCTTACCAATAAGTAAAGCATTAACATTA
GGTTTATTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14897:2408..3519+

>mRNA_H-elongata_contig14897.3280.1 ID=mRNA_H-elongata_contig14897.3280.1|Name=mRNA_H-elongata_contig14897.3280.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=966bp|location=Sequence derived from alignment at H-elongata_contig14897:2408..3519+ (Himanthalia elongata Himel1 dioecious)
ATGTCAATATTAAAAAAACCAGATTTAACTGATCCTAAATTAAGAGCTAA
ACTAGCAAAAGGTATGGGACATAATTATTATGGTGAGCCAGCTTGGCCGA
ATGATATTTTTTATATGTTTCCTATTTGTATTCTAGGAACGTTTGTAATA
GTTATTGGTTTAGCTGTAATGGAACCATCAGCTTTAGGAGAAAAAGCTAA
TCCATTCGCTACTCCTTTAGAAATTTTACCTGAATGGTACTTTTTTCCAA
CTTTTAATCTATTAAGGGTTTTACCAAATAAATTATTAGGTGTTTTAGCA
ATGGCTGCTGTACCAGCAGGACTTATAACAGTCCCATTTATTGAAAACGT
TAATAAATTTCAAAACCCATTCCGTCGACCAGTTGCTTCAACTATATTTT
TAATAGGAACATTTGTTGCTATCTGGTTAGGTATTGGTGCTTGCTTACCA
ATAAGTAAAGCATTAACATTAGGTTTATTTTAAATGTCAATATTAAAAAA
ACCAGATTTAACTGATCCTAAATTAAGAGCTAAACTAGCAAAAGGTATGG
GACATAATTATTATGGTGAGCCAGCTTGGCCGAATGATATTTTTTATATG
TTTCCTATTTGTATTCTAGGAACGTTTGTAATAGTTATTGGTTTAGCTGT
AATGGAACCATCAGCTTTAGGAGAAAAAGCTAATCCATTCGCTACTCCTT
TAGAAATTTTACCTGAATGGTACTTTTTTCCAACTTTTAATCTATTAAGG
GTTTTACCAAATAAATTATTAGGTGTTTTAGCAATGGCTGCTGTACCAGC
AGGACTTATAACAGTCCCATTTATTGAAAACGTTAATAAATTTCAAAACC
CATTCCGTCGACCAGTTGCTTCAACTATATTTTTAATAGGAACATTTGTT
GCTATCTGGTTAGGTATTGGTGCTTGCTTACCAATAAGTAAAGCATTAAC
ATTAGGTTTATTTTAA
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