mRNA_H-elongata_contig148583.3267.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148583.3267.1
Unique NamemRNA_H-elongata_contig148583.3267.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148583.3267.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.570e-9
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 QAVDPLMTRLTTLIPGAPPQCLRALVAGGGSPIPILAFASFRASDGAPVLVVLDAPTA 174
            QA+ PL+TR   LIPG  PQ LRA+  GGG  +P++  ASFR SDG+PVL+VLD   A
Sbjct:  516 QALPPLVTRQRPLIPGVRPQSLRAMAVGGGRSLPVMILASFRPSDGSPVLIVLDTDAA 573
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148583.3267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE4.570e-956.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148583contigH-elongata_contig148583:424..1334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size600
Cds size582
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148583.3267.1prot_H-elongata_contig148583.3267.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148583 442..1334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.8238175-UTR-H-elongata_contig148583:423..4411622929879.8238175-UTR-H-elongata_contig148583:423..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148583 424..441 +
1691679193.1617188-UTR-H-elongata_contig148583:423..4411691679193.1617188-UTR-H-elongata_contig148583:423..441Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148583 424..441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.8420465-CDS-H-elongata_contig148583:441..8501622929879.8420465-CDS-H-elongata_contig148583:441..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148583 442..850 +
1691679193.1731482-CDS-H-elongata_contig148583:441..8501691679193.1731482-CDS-H-elongata_contig148583:441..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148583 442..850 +
1622929879.8599596-CDS-H-elongata_contig148583:1161..13341622929879.8599596-CDS-H-elongata_contig148583:1161..1334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148583 1162..1334 +
1691679193.1806076-CDS-H-elongata_contig148583:1161..13341691679193.1806076-CDS-H-elongata_contig148583:1161..1334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148583 1162..1334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148583.3267.1

>prot_H-elongata_contig148583.3267.1 ID=prot_H-elongata_contig148583.3267.1|Name=mRNA_H-elongata_contig148583.3267.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MTRLTTLIPGAPPQCLRALVAGGGSPIPILAFASFRASDGAPVLVVLDAP
TAEEIEGGRAAATTPLASKMPSTVPTRFQPIEEIELCMRCCSKSVVAGYP
HSVWVEPFGVKAFVCRAPDGSDSSGGGEAGTFAAVKASPNKISFRMSITI
AEASLDESGGSRLGAWEHRHVGAPHEIGDTLERLGVLALGDTSE
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mRNA from alignment at H-elongata_contig148583:424..1334+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148583.3267.1 ID=mRNA_H-elongata_contig148583.3267.1|Name=mRNA_H-elongata_contig148583.3267.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=911bp|location=Sequence derived from alignment at H-elongata_contig148583:424..1334+ (Himanthalia elongata Himel1 dioecious)
CAGGCGGTGGATCCTCTCATGACCCGACTTACGACGCTCATCCCCGGGGC
GCCTCCTCAGTGCCTGCGCGCGTTGGTGGCCGGAGGTGGTTCCCCTATTC
CCATCCTGGCGTTTGCCTCTTTTCGAGCGTCGGACGGGGCGCCGGTCCTT
GTCGTCCTCGACGCGCCGACGGCGGAGGAAATAGAAGGGGGACGGGCGGC
GGCGACGACACCCCTGGCGTCAAAAATGCCTTCGACGGTACCCACCAGAT
TCCAACCTATTGAGGAGATCGAGCTATGCATGAGGTGCTGCTCCAAGAGC
GTTGTGGCCGGGTATCCACACAGCGTCTGGGTTGAGCCTTTCGGAGTGAA
GGCGTTTGTGTGTCGGGCACCCGATGGCAGCGACAGCAGTGGTGGCGGCG
AGGCAGGTACGTTCGCCGCGGTGAAAGGTTGGACCATTTTTTTTTAACAC
TCTTTACCCAAGACGAATTAAGCTTTTTGCGCCCGGCTGATCGCGGTCTG
ATCCGATCCGATATATTGCTAAGATGAGTCGCTGAGCGTGCCTGCGTGCG
TGCGTGCGTGCGTGCGTTCTCGACCTCTTACCTGCCGCTGCAAATGTAGG
TATAACGGTTTCTGGTTTGAGGTTAGTGAGCGGCGCCAGGCTCTCAGCTC
ATTTATTTTACTTTTTGTTAATGGTTGAAAACAATAATATTCTCGTTTTG
CTTCCTTTCTCACCCCTTGTCACGTTGGAATATGCCAGCCTCGCCGAACA
AGATTTCGTTTCGGATGTCCATCACCATCGCCGAGGCATCACTCGACGAA
TCCGGCGGTTCTAGGCTAGGCGCATGGGAGCACAGGCACGTGGGTGCGCC
GCACGAGATAGGGGATACGCTGGAGCGTCTAGGTGTGCTGGCTCTCGGCG
ATACTTCTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig148583:424..1334+

>mRNA_H-elongata_contig148583.3267.1 ID=mRNA_H-elongata_contig148583.3267.1|Name=mRNA_H-elongata_contig148583.3267.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig148583:424..1334+ (Himanthalia elongata Himel1 dioecious)
ATGACCCGACTTACGACGCTCATCCCCGGGGCGCCTCCTCAGTGCCTGCG
CGCGTTGGTGGCCGGAGGTGGTTCCCCTATTCCCATCCTGGCGTTTGCCT
CTTTTCGAGCGTCGGACGGGGCGCCGGTCCTTGTCGTCCTCGACGCGCCG
ACGGCGGAGGAAATAGAAGGGGGACGGGCGGCGGCGACGACACCCCTGGC
GTCAAAAATGCCTTCGACGGTACCCACCAGATTCCAACCTATTGAGGAGA
TCGAGCTATGCATGAGGTGCTGCTCCAAGAGCGTTGTGGCCGGGTATCCA
CACAGCGTCTGGGTTGAGCCTTTCGGAGTGAAGGCGTTTGTGTGTCGGGC
ACCCGATGGCAGCGACAGCAGTGGTGGCGGCGAGGCAGGTACGTTCGCCG
CGGTGAAAGATGACCCGACTTACGACGCTCATCCCCGGGGCGCCTCCTCA
GTGCCTGCGCGCGTTGGTGGCCGGAGGTGGTTCCCCTATTCCCATCCTGG
CGTTTGCCTCTTTTCGAGCGTCGGACGGGGCGCCGGTCCTTGTCGTCCTC
GACGCGCCGACGGCGGAGGAAATAGAAGGGGGACGGGCGGCGGCGACGAC
ACCCCTGGCGTCAAAAATGCCTTCGACGGTACCCACCAGATTCCAACCTA
TTGAGGAGATCGAGCTATGCATGAGGTGCTGCTCCAAGAGCGTTGTGGCC
GGGTATCCACACAGCGTCTGGGTTGAGCCTTTCGGAGTGAAGGCGTTTGT
GTGTCGGGCACCCGATGGCAGCGACAGCAGTGGTGGCGGCGAGGCAGGTA
CGTTCGCCGCGGTGAAAGCCTCGCCGAACAAGATTTCGTTTCGGATGTCC
ATCACCATCGCCGAGGCATCACTCGACGAATCCGGCGGTTCTAGGCTAGG
CGCATGGGAGCACAGGCACGTGGGTGCGCCGCACGAGATAGGGGATACGC
TGGAGCGTCTAGGTGTGCTGGCTCTCGGCGATACTTCTGAGCCTCGCCGA
ACAAGATTTCGTTTCGGATGTCCATCACCATCGCCGAGGCATCACTCGAC
GAATCCGGCGGTTCTAGGCTAGGCGCATGGGAGCACAGGCACGTGGGTGC
GCCGCACGAGATAGGGGATACGCTGGAGCGTCTAGGTGTGCTGGCTCTCG
GCGATACTTCTGAG
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