mRNA_H-elongata_contig148547.3265.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148547.3265.1
Unique NamemRNA_H-elongata_contig148547.3265.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: D8LTV6_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV6_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 5.540e-18
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   31 QGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            +G RP MEDEFFLS DGSFSAVYDGHGGANVS+YLRRNLY+HV
Sbjct:   47 KGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHV 89
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A6H5KKR9_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKR9_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.660e-18
Identity = 37/43 (86.05%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   31 QGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            +G RP MEDEFFLS DGSFSAVYDGHGGANVS+YLRRNLY+HV
Sbjct:  241 KGHRPRMEDEFFLSSDGSFSAVYDGHGGANVSEYLRRNLYKHV 283
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A835Z7U5_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U5_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.450e-13
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   31 QGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            +G R +MED++FLS DG F+AVYDGHGGA+VSKYLR+NLY  V
Sbjct:   65 KGHRSYMEDDYFLSADGRFAAVYDGHGGASVSKYLRQNLYTQV 107
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A4D9DDA2_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDA2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.880e-12
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:   31 QGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNL 147
            +GQR +MED+FF+S+DGSF+ VYDGHGGA VSKYLR+NL
Sbjct:  321 KGQRSYMEDDFFISKDGSFAGVYDGHGGAAVSKYLRQNL 359
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A7S2UHF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHF8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.560e-12
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   31 QGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            +G R +MEDEF +S  G F+AV+DGHGGA+VSKYLR+NLY ++
Sbjct:   35 KGHRSYMEDEFVVSPGGHFAAVFDGHGGASVSKYLRQNLYANL 77
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A7S4EFJ0_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EFJ0_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.670e-11
Identity = 27/43 (62.79%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   31 QGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            QG R +MEDE+++S DG F+AV+DGHGG  VS+YLR+NLY +V
Sbjct:  163 QGFRSYMEDEYYVSNDGDFAAVFDGHGGGKVSRYLRKNLYANV 205
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A1E7FE79_9STRA (Protein serine/threonine phosphatase 2C n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FE79_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.580e-10
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   49 MEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            MEDEFF+S DG F+AV+DGHGG  VS+YLR+NLY +V
Sbjct:    1 MEDEFFVSNDGDFAAVFDGHGGKAVSRYLRKNLYANV 37
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A3L6V2L0_9STRA (PPM-type phosphatase domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V2L0_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 5.490e-10
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 SALLPGRMIPQGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            S LL      +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H+
Sbjct:   84 SPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHI 136
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BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A3L6V8K9_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V8K9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.260e-10
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 SALLPGRMIPQGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            S LL      +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H+
Sbjct:   84 SPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHI 136
[Close]
BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Match: A0A418FA55_9STRA (PPM-type phosphatase domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FA55_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.260e-10
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 SALLPGRMIPQGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV 159
            S LL      +G RP MED  F++ +  F+AV+DGHGGANVS YL+  LY H+
Sbjct:   84 SPLLVSSSAVRGDRPTMEDALFIAPNQRFTAVFDGHGGANVSSYLKETLYDHI 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148547.3265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTV6_ECTSI5.540e-1886.05PPM-type phosphatase domain-containing protein n=1... [more]
A0A6H5KKR9_9PHAE9.660e-1886.05PPM-type phosphatase domain-containing protein n=1... [more]
A0A835Z7U5_9STRA6.450e-1369.77Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A4D9DDA2_9STRA1.880e-1274.36PPM-type phosphatase domain-containing protein n=2... [more]
A0A7S2UHF8_9STRA8.560e-1262.79Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4EFJ0_9STRA1.670e-1162.79Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7FE79_9STRA2.580e-1070.27Protein serine/threonine phosphatase 2C n=1 Tax=Fr... [more]
A0A3L6V2L0_9STRA5.490e-1050.94PPM-type phosphatase domain-containing protein (Fr... [more]
A0A3L6V8K9_9STRA9.260e-1050.94PPM-type phosphatase domain-containing protein n=2... [more]
A0A418FA55_9STRA9.260e-1050.94PPM-type phosphatase domain-containing protein n=5... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148547contigH-elongata_contig148547:231..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D8LTV6
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size138
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.6898572-CDS-H-elongata_contig148547:230..3681622929879.6898572-CDS-H-elongata_contig148547:230..368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148547 231..368 -
1691679193.132417-CDS-H-elongata_contig148547:230..3681691679193.132417-CDS-H-elongata_contig148547:230..368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148547 231..368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.727359-UTR-H-elongata_contig148547:368..3891622929879.727359-UTR-H-elongata_contig148547:368..389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148547 369..389 -
1691679193.14345-UTR-H-elongata_contig148547:368..3891691679193.14345-UTR-H-elongata_contig148547:368..389Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148547 369..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148547.3265.1prot_H-elongata_contig148547.3265.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148547 231..368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148547.3265.1

>prot_H-elongata_contig148547.3265.1 ID=prot_H-elongata_contig148547.3265.1|Name=mRNA_H-elongata_contig148547.3265.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MIPQGQRPHMEDEFFLSRDGSFSAVYDGHGGANVSKYLRRNLYRHV
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mRNA from alignment at H-elongata_contig148547:231..389-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148547.3265.1 ID=mRNA_H-elongata_contig148547.3265.1|Name=mRNA_H-elongata_contig148547.3265.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig148547:231..389- (Himanthalia elongata Himel1 dioecious)
TCTGCCCTTCTGCCTGGACGCATGATTCCCCAGGGACAGCGACCTCACAT
GGAAGACGAGTTCTTCCTGTCTCGGGACGGCAGCTTCTCGGCGGTGTACG
ACGGCCACGGCGGGGCTAACGTTTCCAAGTACCTGCGGCGGAACCTCTAC
AGACACGTG
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Coding sequence (CDS) from alignment at H-elongata_contig148547:231..389-

>mRNA_H-elongata_contig148547.3265.1 ID=mRNA_H-elongata_contig148547.3265.1|Name=mRNA_H-elongata_contig148547.3265.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig148547:231..389- (Himanthalia elongata Himel1 dioecious)
ATGATTCCCCAGGGACAGCGACCTCACATGGAAGACGAGTTCTTCCTGTC
TCGGGACGGCAGCTTCTCGGCGGTGTACGACGGCCACGGCGGGGCTAACG
TTTCCAAGTACCTGCGGCGGAACCTCTACAGACACGTGATGATTCCCCAG
GGACAGCGACCTCACATGGAAGACGAGTTCTTCCTGTCTCGGGACGGCAG
CTTCTCGGCGGTGTACGACGGCCACGGCGGGGCTAACGTTTCCAAGTACC
TGCGGCGGAACCTCTACAGACACGTG
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