mRNA_H-elongata_contig148495.3261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148495.3261.1
Unique NamemRNA_H-elongata_contig148495.3261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148495.3261.1 vs. uniprot
Match: D7FIX4_ECTSI (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX4_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.630e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 RLVRILREMRASLLERGSCFRFDTKVVGLLSRGGGQRGAVRGLKLADGGEILADRWVGTMYHGTQ 195
            RLVRILR+MRA L+ERG+ FRFDTKV  LL+RGGG RGA+ GLKLADG EILADR +  + H  +
Sbjct:  295 RLVRILRDMRAFLIERGATFRFDTKVEALLTRGGGDRGAISGLKLADGSEILADRVILAVGHSAR 359
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BLAST of mRNA_H-elongata_contig148495.3261.1 vs. uniprot
Match: A0A6H5JX72_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX72_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.060e-17
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 RLVRILREMRASLLERGSCFRFDTKVVGLLSRGGGQRGAVRGLKLADGGEILADRWVGTMYHGTQ 195
            RLVRILR+MRA L+ERG+ FRFDTKV GLL+RGGG R A+ GLKLADG EILADR +  + H  +
Sbjct:  426 RLVRILRDMRAFLIERGATFRFDTKVEGLLTRGGGDREAISGLKLADGSEILADRVILAVGHSAR 490
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148495.3261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIX4_ECTSI1.630e-1767.69FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JX72_9PHAE3.060e-1767.69FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148495contigH-elongata_contig148495:124..318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue3.4e-11
Seed eggNOG ortholog2880.D7FIX4
EggNOG free text desc.5-formyltetrahydrofolate cyclo-ligase activity
EggNOG OGs2QSVD@2759,COG2509@1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size195
Cds size171
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.15638-UTR-H-elongata_contig148495:123..1471622929879.15638-UTR-H-elongata_contig148495:123..147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148495 124..147 +
1691679192.8984468-UTR-H-elongata_contig148495:123..1471691679192.8984468-UTR-H-elongata_contig148495:123..147Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148495 124..147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.174384-CDS-H-elongata_contig148495:147..3181622929879.174384-CDS-H-elongata_contig148495:147..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148495 148..318 +
1691679192.91075-CDS-H-elongata_contig148495:147..3181691679192.91075-CDS-H-elongata_contig148495:147..318Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148495 148..318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148495.3261.1prot_H-elongata_contig148495.3261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148495 148..318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148495.3261.1

>prot_H-elongata_contig148495.3261.1 ID=prot_H-elongata_contig148495.3261.1|Name=mRNA_H-elongata_contig148495.3261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MRASLLERGSCFRFDTKVVGLLSRGGGQRGAVRGLKLADGGEILADRWVG
TMYHGTQ
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mRNA from alignment at H-elongata_contig148495:124..318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148495.3261.1 ID=mRNA_H-elongata_contig148495.3261.1|Name=mRNA_H-elongata_contig148495.3261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig148495:124..318+ (Himanthalia elongata Himel1 dioecious)
AGACTGGTGCGAATCCTGAGAGAAATGAGGGCGTCGCTGTTGGAGCGCGG
GAGTTGTTTTCGCTTCGATACCAAGGTGGTGGGCTTGCTCTCGAGAGGAG
GAGGGCAAAGGGGAGCCGTGCGCGGCCTGAAGTTGGCGGACGGCGGAGAA
ATCTTGGCAGACAGGTGGGTGGGTACCATGTACCATGGGACCCAA
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Coding sequence (CDS) from alignment at H-elongata_contig148495:124..318+

>mRNA_H-elongata_contig148495.3261.1 ID=mRNA_H-elongata_contig148495.3261.1|Name=mRNA_H-elongata_contig148495.3261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig148495:124..318+ (Himanthalia elongata Himel1 dioecious)
ATGAGGGCGTCGCTGTTGGAGCGCGGGAGTTGTTTTCGCTTCGATACCAA
GGTGGTGGGCTTGCTCTCGAGAGGAGGAGGGCAAAGGGGAGCCGTGCGCG
GCCTGAAGTTGGCGGACGGCGGAGAAATCTTGGCAGACAGGTGGGTGGGT
ACCATGTACCATGGGACCCAAATGAGGGCGTCGCTGTTGGAGCGCGGGAG
TTGTTTTCGCTTCGATACCAAGGTGGTGGGCTTGCTCTCGAGAGGAGGAG
GGCAAAGGGGAGCCGTGCGCGGCCTGAAGTTGGCGGACGGCGGAGAAATC
TTGGCAGACAGGTGGGTGGGTACCATGTACCATGGGACCCAA
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