mRNA_H-elongata_contig148443.3259.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148443.3259.1
Unique NamemRNA_H-elongata_contig148443.3259.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148443.3259.1 vs. uniprot
Match: A0A6H5KTG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG1_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.620e-18
Identity = 69/198 (34.85%), Postives = 91/198 (45.96%), Query Frame = 1 
Query:   28 INQWHIIHRGISFTGHMAVGLEGSGGTCTMHIRRSSFPISTRYFLDKHVQLQTVHTRFNEGAITASEGIKATSLKRHLMHSGPTRGNKGGLGRKMMITTAAEVRHRAGHTRDSALISTLDQQVQLREVKPRSYAWALTEIRVVT-------GYAPWHPARAEYLVVACHGTERLVAGWRRASDFRSLAKVAQNTSMHK 600
            +N WH ++  +S +G ++   E   G CTMHIRR+SFPISTR+F +K     T   +      TA  G    S +       P  G+    GR                          +     +  +P SY+WA+TEIRV+        G AP +   A+YLVV C G E+LVAGWRRASDF  LA  A    M K
Sbjct:  277 LNSWHPLYPTVSSSGRLSA--ESCSGKCTMHIRRTSFPISTRHFPEKP---PTPPNKKRRSDRTARSGSSWGSGR-------PLNGSPLLQGRXXXXXXXXXXXXXXXXXXXXXXXXXXESP---KAGRPTSYSWAVTEIRVIRPDLRFPLGLAPPY---AQYLVVVCMGREKLVAGWRRASDFEKLAATASKAWMPK 456
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148443.3259.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTG1_9PHAE4.620e-1834.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148443contigH-elongata_contig148443:365..964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size582
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.045341-UTR-H-elongata_contig148443:364..3821622929879.045341-UTR-H-elongata_contig148443:364..382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148443 365..382 +
1691679192.8728898-UTR-H-elongata_contig148443:364..3821691679192.8728898-UTR-H-elongata_contig148443:364..382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148443 365..382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929879.0648866-CDS-H-elongata_contig148443:382..9641622929879.0648866-CDS-H-elongata_contig148443:382..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148443 383..964 +
1691679192.880312-CDS-H-elongata_contig148443:382..9641691679192.880312-CDS-H-elongata_contig148443:382..964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148443 383..964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148443.3259.1prot_H-elongata_contig148443.3259.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148443 383..964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148443.3259.1

>prot_H-elongata_contig148443.3259.1 ID=prot_H-elongata_contig148443.3259.1|Name=mRNA_H-elongata_contig148443.3259.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=194bp
MAEINQWHIIHRGISFTGHMAVGLEGSGGTCTMHIRRSSFPISTRYFLDK
HVQLQTVHTRFNEGAITASEGIKATSLKRHLMHSGPTRGNKGGLGRKMMI
TTAAEVRHRAGHTRDSALISTLDQQVQLREVKPRSYAWALTEIRVVTGYA
PWHPARAEYLVVACHGTERLVAGWRRASDFRSLAKVAQNTSMHK
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mRNA from alignment at H-elongata_contig148443:365..964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148443.3259.1 ID=mRNA_H-elongata_contig148443.3259.1|Name=mRNA_H-elongata_contig148443.3259.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=600bp|location=Sequence derived from alignment at H-elongata_contig148443:365..964+ (Himanthalia elongata Himel1 dioecious)
AGGAAGAGGGCCAACAGAATGGCCGAGATAAACCAGTGGCACATTATTCA
TCGAGGGATCTCATTTACTGGTCATATGGCCGTGGGTCTAGAAGGTAGCG
GTGGCACGTGCACTATGCACATTAGACGGTCATCCTTCCCTATTTCGACG
CGTTATTTCCTGGACAAGCACGTTCAGCTGCAGACGGTCCACACTCGATT
TAACGAGGGTGCCATTACCGCAAGTGAAGGGATTAAAGCCACAAGCCTCA
AGAGACATCTGATGCACAGCGGGCCTACCCGTGGAAATAAAGGAGGCCTT
GGACGCAAAATGATGATAACGACTGCGGCTGAGGTTCGCCACCGTGCAGG
GCACACGAGGGATTCAGCGCTGATCAGTACGCTAGATCAGCAGGTGCAAC
TGAGGGAGGTCAAGCCCCGGAGCTACGCTTGGGCGTTGACGGAAATTCGA
GTTGTCACTGGGTATGCGCCGTGGCACCCCGCAAGAGCCGAGTACCTCGT
GGTTGCCTGCCATGGGACGGAGAGGCTTGTGGCTGGATGGCGTAGGGCAT
CCGACTTTAGAAGCCTGGCCAAGGTGGCGCAGAATACAAGCATGCACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig148443:365..964+

>mRNA_H-elongata_contig148443.3259.1 ID=mRNA_H-elongata_contig148443.3259.1|Name=mRNA_H-elongata_contig148443.3259.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1164bp|location=Sequence derived from alignment at H-elongata_contig148443:365..964+ (Himanthalia elongata Himel1 dioecious)
ATGGCCGAGATAAACCAGTGGCACATTATTCATCGAGGGATCTCATTTAC
TGGTCATATGGCCGTGGGTCTAGAAGGTAGCGGTGGCACGTGCACTATGC
ACATTAGACGGTCATCCTTCCCTATTTCGACGCGTTATTTCCTGGACAAG
CACGTTCAGCTGCAGACGGTCCACACTCGATTTAACGAGGGTGCCATTAC
CGCAAGTGAAGGGATTAAAGCCACAAGCCTCAAGAGACATCTGATGCACA
GCGGGCCTACCCGTGGAAATAAAGGAGGCCTTGGACGCAAAATGATGATA
ACGACTGCGGCTGAGGTTCGCCACCGTGCAGGGCACACGAGGGATTCAGC
GCTGATCAGTACGCTAGATCAGCAGGTGCAACTGAGGGAGGTCAAGCCCC
GGAGCTACGCTTGGGCGTTGACGGAAATTCGAGTTGTCACTGGGTATGCG
CCGTGGCACCCCGCAAGAGCCGAGTACCTCGTGGTTGCCTGCCATGGGAC
GGAGAGGCTTGTGGCTGGATGGCGTAGGGCATCCGACTTTAGAAGCCTGG
CCAAGGTGGCGCAGAATACAAGCATGCACAAGATGGCCGAGATAAACCAG
TGGCACATTATTCATCGAGGGATCTCATTTACTGGTCATATGGCCGTGGG
TCTAGAAGGTAGCGGTGGCACGTGCACTATGCACATTAGACGGTCATCCT
TCCCTATTTCGACGCGTTATTTCCTGGACAAGCACGTTCAGCTGCAGACG
GTCCACACTCGATTTAACGAGGGTGCCATTACCGCAAGTGAAGGGATTAA
AGCCACAAGCCTCAAGAGACATCTGATGCACAGCGGGCCTACCCGTGGAA
ATAAAGGAGGCCTTGGACGCAAAATGATGATAACGACTGCGGCTGAGGTT
CGCCACCGTGCAGGGCACACGAGGGATTCAGCGCTGATCAGTACGCTAGA
TCAGCAGGTGCAACTGAGGGAGGTCAAGCCCCGGAGCTACGCTTGGGCGT
TGACGGAAATTCGAGTTGTCACTGGGTATGCGCCGTGGCACCCCGCAAGA
GCCGAGTACCTCGTGGTTGCCTGCCATGGGACGGAGAGGCTTGTGGCTGG
ATGGCGTAGGGCATCCGACTTTAGAAGCCTGGCCAAGGTGGCGCAGAATA
CAAGCATGCACAAG
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