mRNA_H-elongata_contig148380.3255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148380.3255.1
Unique NamemRNA_H-elongata_contig148380.3255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148380.3255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148380contigH-elongata_contig148380:549..1358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size249
Cds size129
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148380.3255.1prot_H-elongata_contig148380.3255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148380 549..1239 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.7231145-CDS-H-elongata_contig148380:548..6011622929878.7231145-CDS-H-elongata_contig148380:548..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148380 549..601 -
1691679192.73913-CDS-H-elongata_contig148380:548..6011691679192.73913-CDS-H-elongata_contig148380:548..601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148380 549..601 -
1622929878.7356956-CDS-H-elongata_contig148380:1163..12391622929878.7356956-CDS-H-elongata_contig148380:1163..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148380 1164..1239 -
1691679192.7503974-CDS-H-elongata_contig148380:1163..12391691679192.7503974-CDS-H-elongata_contig148380:1163..1239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148380 1164..1239 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.7499282-UTR-H-elongata_contig148380:1239..13581622929878.7499282-UTR-H-elongata_contig148380:1239..1358Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148380 1240..1358 -
1691679192.7598414-UTR-H-elongata_contig148380:1239..13581691679192.7598414-UTR-H-elongata_contig148380:1239..1358Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148380 1240..1358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148380.3255.1

>prot_H-elongata_contig148380.3255.1 ID=prot_H-elongata_contig148380.3255.1|Name=mRNA_H-elongata_contig148380.3255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=43bp
MGIWSRAGFASRESTNIFFHPSAYSGGGAINRRLLSHNKNISS
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mRNA from alignment at H-elongata_contig148380:549..1358-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148380.3255.1 ID=mRNA_H-elongata_contig148380.3255.1|Name=mRNA_H-elongata_contig148380.3255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=810bp|location=Sequence derived from alignment at H-elongata_contig148380:549..1358- (Himanthalia elongata Himel1 dioecious)
GAGAAGACCTGGTCCCAAAACACTGCATCAATCGGGCCATCCTCCAGCTT
CAGGCCTACGCGTGAACGCAAGACAAGGCTTGCGACGTTCTTTCTTCGGC
TGTAGTCGTGAAGCCGAATATGGGCATCTGGTCGAGAGCAGGCTTTGCGA
GTCGTGAATCTACCAACATATTTTTTCACCCCTCTGCGTATTCAGGCAGG
TAAAACTGATCAGCTGGGTAGCTTGCGACACGTAGATGGGTTCTCCGTGC
TGGCGTGTTGCCAAAGTTCCAGTGTGGCAGAATTAGCTAGACCTGCGCAA
TTTTATTATCTAATATTTTGGGACTCTAGCGAAGAAGGGTATCCTGTCCC
CTGATAGTAAAGCCTTTATCGTTTTCAATGAAAACTTTTTTCCCCTATTT
GGTTCAACATTTTAATACAGTATAGTGGACGTTCAGGGTTGCCTGCGCCA
GCGAGACTCATGTCGCACTTGAGTCCAGGCCTGGACGTAGGGACGCGTCG
ATGTATCATCAAATTTCGAGCGATTATCATGGGGCGATTGAGCTCTTCGG
GTACAAACCCCATCAACTCCTTCCTCCAAAAACGACGGTCTTGTTATAAT
AATCCGCTGATTCGTCGTTCAAATCGTTTACGAGCATTATCACCACCATC
GCCGCCACGGCAACCGAAGTCGCTCGGGGCTTACAGCAGCAGCAGCACTA
GATACCCTTTTTGGGCTATTTTACCTACAAGGTCGCACTCTTACTGGTCA
AGCTCAGGTGGAGGAGCAATCAATCGAAGGCTACTGTCTCATAACAAGAA
CATCAGCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig148380:549..1358-

>mRNA_H-elongata_contig148380.3255.1 ID=mRNA_H-elongata_contig148380.3255.1|Name=mRNA_H-elongata_contig148380.3255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at H-elongata_contig148380:549..1358- (Himanthalia elongata Himel1 dioecious)
ATGGGCATCTGGTCGAGAGCAGGCTTTGCGAGTCGTGAATCTACCAACAT
ATTTTTTCACCCCTCTGCGTATTCAGATGGGCATCTGGTCGAGAGCAGGC
TTTGCGAGTCGTGAATCTACCAACATATTTTTTCACCCCTCTGCGTATTC
AGGTGGAGGAGCAATCAATCGAAGGCTACTGTCTCATAACAAGAACATCA
GCAGCGTGGAGGAGCAATCAATCGAAGGCTACTGTCTCATAACAAGAACA
TCAGCAGC
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