mRNA_H-elongata_contig14834.3253.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14834.3253.1
Unique NamemRNA_H-elongata_contig14834.3253.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14834.3253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14834contigH-elongata_contig14834:2517..3576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_006510.2
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.4129894-CDS-H-elongata_contig14834:2516..27411622929878.4129894-CDS-H-elongata_contig14834:2516..2741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14834 2517..2741 -
1691679192.6073334-CDS-H-elongata_contig14834:2516..27411691679192.6073334-CDS-H-elongata_contig14834:2516..2741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14834 2517..2741 -
1622929878.4253106-CDS-H-elongata_contig14834:3468..35761622929878.4253106-CDS-H-elongata_contig14834:3468..3576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14834 3469..3576 -
1691679192.6153157-CDS-H-elongata_contig14834:3468..35761691679192.6153157-CDS-H-elongata_contig14834:3468..3576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14834 3469..3576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14834.3253.1prot_H-elongata_contig14834.3253.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14834 2517..3576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14834.3253.1

>prot_H-elongata_contig14834.3253.1 ID=prot_H-elongata_contig14834.3253.1|Name=mRNA_H-elongata_contig14834.3253.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
HIGADTGANGRLRLSWKAAKEFRQRMEGAVATSAGEWRPGVLGASGKKGA
RGGRNTRGGGGGGTNRITLVPDSTVGPTPFAVDPLGLVQPYAHLELPDFD
QSVDGYLVSLA
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mRNA from alignment at H-elongata_contig14834:2517..3576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14834.3253.1 ID=mRNA_H-elongata_contig14834.3253.1|Name=mRNA_H-elongata_contig14834.3253.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1060bp|location=Sequence derived from alignment at H-elongata_contig14834:2517..3576- (Himanthalia elongata Himel1 dioecious)
CATATTGGCGCGGATACCGGCGCCAACGGTAGACTTCGTCTTTCCTGGAA
AGCGGCAAAAGAGTTTCGGCAGCGGATGGAAGGTGCCGTGGCGACGTCGG
CTGGTGAAGTGAGCGTGGCGGGTGCGGGGGGGGGGAGTATCTCTGAACGG
GATGCGGTTGAAACGTCGCGTGAAATTTCTCCCAGACGGTTGTGTGTTAC
GAAAGTGGGGCTGAGGTGGTGGTAGCCTTGCAAGTATTTTTGACCCCAAA
AGAGGTCTCGGAATGTCCAAGCTAGATCTTGTTGTTGTTGCTGTGACCTG
GCGCGCGCGTTTCGCCTTCGAACTTTGGGTGACTAGGGTCTGCCTGCTCT
GCATCTTCCAGAAAAGGACCATTAAAACACCCTCGAAGAAACTGGATCGT
GGGAAGTTTCCCGACATCGTACTACGTTGTGTGCGTCACGGACAGCACAA
AAATAATCAAACAGCCGCCCCCCTTGGGACTAATTCCTGAACTTCTCACC
GTCAGATATTTAGGATGCAGCGTCGTTTTGCCTAAGCGCACCAAAGTGAT
CCAAAGTGGTCCAAAGTGCTCAAACAACGCCTCCTAACAACATTTCGCCC
GCTTTTTATCGACACCGCAGTACACACACACACTACTCAGATAGCGCCCC
CTTAAGGTGATTTCGCACACTTCTTACCGGCACAGAAATCGTATGACTAT
CTATTAGTAGCGTCTTTAAAGTATATATATATATATATATATCTGTATGT
GTGAGTGTGTCCGCATGCGCGCGTCGGATTTCAAGCATGCGAGCTTTATT
ATTTACACTGTTGCTGCTGCTGCTGCTGCTGTCAGTGGCGACCTGGTGTC
CTGGGGGCTTCAGGAAAGAAGGGCGCGCGAGGTGGCCGTAACACCAGAGG
AGGAGGAGGAGGAGGAACCAATCGAATAACCCTGGTGCCGGACTCGACAG
TAGGACCAACGCCCTTCGCCGTCGATCCTCTAGGCCTGGTCCAGCCATAC
GCGCACCTCGAGCTCCCAGATTTTGACCAGAGCGTGGACGGCTACCTGGT
GTCCCTGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig14834:2517..3576-

>mRNA_H-elongata_contig14834.3253.1 ID=mRNA_H-elongata_contig14834.3253.1|Name=mRNA_H-elongata_contig14834.3253.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig14834:2517..3576- (Himanthalia elongata Himel1 dioecious)
CATATTGGCGCGGATACCGGCGCCAACGGTAGACTTCGTCTTTCCTGGAA
AGCGGCAAAAGAGTTTCGGCAGCGGATGGAAGGTGCCGTGGCGACGTCGG
CTGGTGAACATATTGGCGCGGATACCGGCGCCAACGGTAGACTTCGTCTT
TCCTGGAAAGCGGCAAAAGAGTTTCGGCAGCGGATGGAAGGTGCCGTGGC
GACGTCGGCTGGTGAATGGCGACCTGGTGTCCTGGGGGCTTCAGGAAAGA
AGGGCGCGCGAGGTGGCCGTAACACCAGAGGAGGAGGAGGAGGAGGAACC
AATCGAATAACCCTGGTGCCGGACTCGACAGTAGGACCAACGCCCTTCGC
CGTCGATCCTCTAGGCCTGGTCCAGCCATACGCGCACCTCGAGCTCCCAG
ATTTTGACCAGAGCGTGGACGGCTACCTGGTGTCCCTGGCCTGGCGACCT
GGTGTCCTGGGGGCTTCAGGAAAGAAGGGCGCGCGAGGTGGCCGTAACAC
CAGAGGAGGAGGAGGAGGAGGAACCAATCGAATAACCCTGGTGCCGGACT
CGACAGTAGGACCAACGCCCTTCGCCGTCGATCCTCTAGGCCTGGTCCAG
CCATACGCGCACCTCGAGCTCCCAGATTTTGACCAGAGCGTGGACGGCTA
CCTGGTGTCCCTGGCC
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