mRNA_H-elongata_contig148295.3251.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148295.3251.1
Unique NamemRNA_H-elongata_contig148295.3251.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: D7FSF6_ECTSI (Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSF6_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 8.830e-27
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   31 LQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVKP 201
            L+ IEEAH +AC+AG+  YADPATGYKVFT A+HEKRGFCCGNACRHCP+GHLEV P
Sbjct:   14 LRDIEEAHTAACNAGVAHYADPATGYKVFTQASHEKRGFCCGNACRHCPFGHLEVNP 70
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A6M9PVY7_9BURK (Uncharacterized protein n=2 Tax=Polynucleobacter sp. MWH-UH21B TaxID=1743174 RepID=A0A6M9PVY7_9BURK)

HSP 1 Score: 82.4 bits (202), Expect = 2.060e-19
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   31 LQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEV 195
            +Q+I E H++ACD G D Y DP++GY+VFTSA   K+G CCGN+CRHCPYG + V
Sbjct:    1 MQSITELHQAACDQGSDTYVDPSSGYQVFTSAALLKQGRCCGNSCRHCPYGRINV 55
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A7S3Z105_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z105_9EUKA)

HSP 1 Score: 89.0 bits (219), Expect = 4.140e-19
Identity = 34/54 (62.96%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   37 AIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVK 198
            ++E AH+ AC+ G+D Y DP TGY VFT+  H KRG+CCGN CRHCPYGH  VK
Sbjct:  305 SVERAHREACELGMDLYEDPVTGYSVFTAHFHGKRGWCCGNCCRHCPYGHWHVK 358
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A835YXG3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXG3_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.830e-18
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   40 IEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVK 198
            IE+AHK+ACDAG   Y+DPATGY VFT   H KRGFCCGN CRHCP+ H  V+
Sbjct:    9 IEDAHKAACDAGEMAYSDPATGYTVFTELQHIKRGFCCGNGCRHCPFLHQNVE 61
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: UPI001C0B3969 (DUF5522 domain-containing protein n=2 Tax=Polynucleobacter TaxID=44013 RepID=UPI001C0B3969)

HSP 1 Score: 79.0 bits (193), Expect = 4.080e-18
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   31 LQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEV 195
            + +IE+ H+ AC+ G D Y DPATGY+V TS  H KRG CCGN CRHCP+ ++ V
Sbjct:    1 MPSIEKLHQQACERGEDTYVDPATGYQVLTSQAHLKRGTCCGNVCRHCPFEYINV 55
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A1U7QUT1_MESAU (uncharacterized protein C1orf53 homolog n=4 Tax=Cricetinae TaxID=10026 RepID=A0A1U7QUT1_MESAU)

HSP 1 Score: 80.5 bits (197), Expect = 7.870e-18
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   22 TLALQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVK 198
            T A Q I E H++AC AG   Y DPATGY VFT   H +RG CCG+ACRHCPYG + VK
Sbjct:   64 TAAEQHIAELHRAACAAGQLSYVDPATGYVVFTRLAHLQRGACCGSACRHCPYGQVNVK 122
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A0B6XYI1_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6XYI1_9EUPU)

HSP 1 Score: 78.6 bits (192), Expect = 1.130e-17
Identity = 34/65 (52.31%), Postives = 40/65 (61.54%), Query Frame = 1 
Query:    7 KRTMSTLALQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVKP 201
            K +  +++ Q I   H  A + G D Y DP TGY V+T   H KRG CCGNACRHCPYGH  V P
Sbjct:    6 KNSSLSVSEQLIHTKHLEALERGDDAYKDPETGYDVYTRLAHLKRGACCGNACRHCPYGHTAVPP 70
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BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A2G4J7R7_9BURK (Uncharacterized protein n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A2G4J7R7_9BURK)

HSP 1 Score: 77.8 bits (190), Expect = 1.260e-17
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   31 LQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEV 195
            + +IEE H+ AC+ G D Y DP +GY+V TS  H KRG CCGN CRHCP+ ++ V
Sbjct:    1 MPSIEELHRRACEKGQDTYIDPESGYQVLTSQAHSKRGACCGNRCRHCPFDYINV 55
[Close]
BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A6P8FX99_CLUHA (uncharacterized protein C1orf53 homolog n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P8FX99_CLUHA)

HSP 1 Score: 80.9 bits (198), Expect = 1.280e-17
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   40 IEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVK 198
            I + HK AC+A    Y DP+TGYKVFT+  H KRG CCG ACRHCPYGH+ V+
Sbjct:  105 IHKLHKEACEAQKRLYIDPSTGYKVFTAFAHLKRGKCCGTACRHCPYGHVNVE 157
[Close]
BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Match: A0A1A8D0N8_9TELE (Chromosome 1 open reading frame 53 (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8D0N8_9TELE)

HSP 1 Score: 77.8 bits (190), Expect = 2.110e-17
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   40 IEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNACRHCPYGHLEVK 198
            I   H+ AC A    Y DP++GYKVFT   H +RG CCG+ACRHCPYGH+ VK
Sbjct:   28 IHRKHEEACQAKEQMYVDPSSGYKVFTEYAHLQRGKCCGSACRHCPYGHVNVK 80
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148295.3251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSF6_ECTSI8.830e-2778.95Diphthine--ammonia ligase n=2 Tax=Ectocarpus TaxID... [more]
A0A6M9PVY7_9BURK2.060e-1960.00Uncharacterized protein n=2 Tax=Polynucleobacter s... [more]
A0A7S3Z105_9EUKA4.140e-1962.96Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A835YXG3_9STRA1.830e-1867.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI001C0B39694.080e-1856.36DUF5522 domain-containing protein n=2 Tax=Polynucl... [more]
A0A1U7QUT1_MESAU7.870e-1861.02uncharacterized protein C1orf53 homolog n=4 Tax=Cr... [more]
A0A0B6XYI1_9EUPU1.130e-1752.31Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A2G4J7R7_9BURK1.260e-1754.55Uncharacterized protein n=1 Tax=Alcaligenaceae bac... [more]
A0A6P8FX99_CLUHA1.280e-1762.26uncharacterized protein C1orf53 homolog n=1 Tax=Cl... [more]
A0A1A8D0N8_9TELE2.110e-1758.49Chromosome 1 open reading frame 53 (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148295contigH-elongata_contig148295:340..1396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue1.8e-21
Seed eggNOG ortholog2880.D7FSF6
EggNOG OGs2CTC6@1,2S4BH@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size186
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148295.3251.1prot_H-elongata_contig148295.3251.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148295 355..1396 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.2957335-UTR-H-elongata_contig148295:339..3541622929878.2957335-UTR-H-elongata_contig148295:339..354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148295 340..354 +
1691679192.5588334-UTR-H-elongata_contig148295:339..3541691679192.5588334-UTR-H-elongata_contig148295:339..354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148295 340..354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.3158567-CDS-H-elongata_contig148295:354..5061622929878.3158567-CDS-H-elongata_contig148295:354..506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148295 355..506 +
1691679192.5731213-CDS-H-elongata_contig148295:354..5061691679192.5731213-CDS-H-elongata_contig148295:354..506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148295 355..506 +
1622929878.3300192-CDS-H-elongata_contig148295:1362..13961622929878.3300192-CDS-H-elongata_contig148295:1362..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148295 1363..1396 +
1691679192.584671-CDS-H-elongata_contig148295:1362..13961691679192.584671-CDS-H-elongata_contig148295:1362..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148295 1363..1396 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148295.3251.1

>prot_H-elongata_contig148295.3251.1 ID=prot_H-elongata_contig148295.3251.1|Name=mRNA_H-elongata_contig148295.3251.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MSTLALQAIEEAHKSACDAGIDFYADPATGYKVFTSATHEKRGFCCGNAC
RHCPYGHLEVKP
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mRNA from alignment at H-elongata_contig148295:340..1396+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148295.3251.1 ID=mRNA_H-elongata_contig148295.3251.1|Name=mRNA_H-elongata_contig148295.3251.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1057bp|location=Sequence derived from alignment at H-elongata_contig148295:340..1396+ (Himanthalia elongata Himel1 dioecious)
CCCTGGAAAAGGACCATGAGCACGCTAGCGCTGCAGGCCATTGAAGAGGC
TCATAAATCCGCCTGTGATGCAGGAATCGATTTCTACGCGGATCCAGCGA
CGGGATACAAGGTTTTCACGTCGGCGACGCACGAGAAACGTGGATTTTGC
TGCGGCAACGCTTGCCGGTCAGTGAAGCAGCGAATCAACGCTGGAGACGG
TTGGTTTGGACGTAGCAATCAACGTTGGTCAGCCTCCCTCGAGTACATAC
GTTTTCCCTAATGATGACGAGGTATACTGCCGCCTTCTCTGCGATGGGAC
TTTTGTTCGGGGTGGTCGCTTCCTCGTCTGAGTTCTTGTTAGAGTCTCAT
GTCAACATGTCACGAATATATACAGTAAGCCAAGCCGCGAAGTATCCACT
GGGACAAGAATAAATCATACAGCAGTCGGCATGCTAATTCCTATGGTTAT
CGTGTGACGCGGTCAGGATTTTAGCTGTTCCCAGGCGGCTGTCGCAATAT
CGAATCACTGGGTGGTGTTATTGCGCTTAGCGGAGTGTCACGAAGAGGTG
ACCCCGTTGAAATTGGTACCTCTTTACGTGTGATGATCTCTGAGACAACG
AATCTGATTGTCGAGACGGAACATGTACACTCAGCATTATCAACCCCTGT
GGTCCTTTTAGAATTTGTTCTGCACAAATTTGATGCAATTTATGTCTGGG
GGGATCTTATCCCAGATATCCCTTTACAACCCATGAATCAGTGGATGCCT
CGTCACCTCAAGCTCCCGCCTTCGGATTGGCTTATGGATGCTCGGAGAGT
TAGAATGAGCCTAAAGTCTTTTAAATAAGAATAATAAGGAAGGACCCAAA
TCAACATACTGTTACACAAAGCTCCCAGCTTTTCCAATTTGTCACGCTCT
TGTTGGTCACACATTTACCTCCTCTTGTATGAAAGTCCAATTTGGAGACG
CTATAGACCTCAGTAGACCGATCAACAAGCTCACTAATGACTCAGATACC
TCCGTGACTCGCCACTCTTCCAGGCACTGCCCATATGGCCATTTGGAGGT
GAAACCG
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Coding sequence (CDS) from alignment at H-elongata_contig148295:340..1396+

>mRNA_H-elongata_contig148295.3251.1 ID=mRNA_H-elongata_contig148295.3251.1|Name=mRNA_H-elongata_contig148295.3251.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig148295:340..1396+ (Himanthalia elongata Himel1 dioecious)
ATGAGCACGCTAGCGCTGCAGGCCATTGAAGAGGCTCATAAATCCGCCTG
TGATGCAGGAATCGATTTCTACGCGGATCCAGCGACGGGATACAAGGTTT
TCACGTCGGCGACGCACGAGAAACGTGGATTTTGCTGCGGCAACGCTTGC
CGATGAGCACGCTAGCGCTGCAGGCCATTGAAGAGGCTCATAAATCCGCC
TGTGATGCAGGAATCGATTTCTACGCGGATCCAGCGACGGGATACAAGGT
TTTCACGTCGGCGACGCACGAGAAACGTGGATTTTGCTGCGGCAACGCTT
GCCGGCACTGCCCATATGGCCATTTGGAGGTGAAACCGGCACTGCCCATA
TGGCCATTTGGAGGTGAAACCG
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