mRNA_H-elongata_contig148292.3250.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148292.3250.1
Unique NamemRNA_H-elongata_contig148292.3250.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148292.3250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148292contigH-elongata_contig148292:636..1051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005520.1
Exons2
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929878.2452912-CDS-H-elongata_contig148292:635..7701622929878.2452912-CDS-H-elongata_contig148292:635..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148292 636..770 -
1691679192.5358436-CDS-H-elongata_contig148292:635..7701691679192.5358436-CDS-H-elongata_contig148292:635..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148292 636..770 -
1622929878.256335-CDS-H-elongata_contig148292:943..10511622929878.256335-CDS-H-elongata_contig148292:943..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148292 944..1051 -
1691679192.5464878-CDS-H-elongata_contig148292:943..10511691679192.5464878-CDS-H-elongata_contig148292:943..1051Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148292 944..1051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148292.3250.1prot_H-elongata_contig148292.3250.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148292 636..1051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148292.3250.1

>prot_H-elongata_contig148292.3250.1 ID=prot_H-elongata_contig148292.3250.1|Name=mRNA_H-elongata_contig148292.3250.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
RWSCCGAATEFARGCAPRPHVPKEIMVTVRAEGAPPRFAPCVTAFQVSCF
RHLEVNIFPAVMYELDIHLRRGVAGSIMRYF
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mRNA from alignment at H-elongata_contig148292:636..1051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148292.3250.1 ID=mRNA_H-elongata_contig148292.3250.1|Name=mRNA_H-elongata_contig148292.3250.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=416bp|location=Sequence derived from alignment at H-elongata_contig148292:636..1051- (Himanthalia elongata Himel1 dioecious)
AGATGGTCGTGTTGTGGAGCAGCTACCGAGTTCGCCCGAGGTTGTGCACC
TCGCCCGCACGTGCCTAAGGAAATCATGGTAACAGTCAGGGCCGAGGGAG
CACCACCCGTTCTTGTTGGGACCACGAAGGCAAGGGTTAGGTGGATGTGG
GATTGGGGGGGGCGTACTATCGTCAGCCCAAAGGCTAACCGAATTACTCT
TATTTTTATAATACATTGTTTGCTAACAGTAATAACGTGTATTGCACAAA
AAGTGTACTGGTAATGATAATTTCGATCTAGCGATTTGCGCCCTGCGTCA
CCGCGTTCCAGGTGTCTTGCTTCAGACACTTGGAAGTCAACATATTTCCC
GCCGTCATGTACGAGTTGGATATTCACCTGAGGAGGGGGGTAGCTGGGTC
TATTATGCGATATTTC
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Coding sequence (CDS) from alignment at H-elongata_contig148292:636..1051-

>mRNA_H-elongata_contig148292.3250.1 ID=mRNA_H-elongata_contig148292.3250.1|Name=mRNA_H-elongata_contig148292.3250.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig148292:636..1051- (Himanthalia elongata Himel1 dioecious)
AGATGGTCGTGTTGTGGAGCAGCTACCGAGTTCGCCCGAGGTTGTGCACC
TCGCCCGCACGTGCCTAAGGAAATCATGGTAACAGTCAGGGCCGAGGGAG
CACCACCCAGATGGTCGTGTTGTGGAGCAGCTACCGAGTTCGCCCGAGGT
TGTGCACCTCGCCCGCACGTGCCTAAGGAAATCATGGTAACAGTCAGGGC
CGAGGGAGCACCACCCCGATTTGCGCCCTGCGTCACCGCGTTCCAGGTGT
CTTGCTTCAGACACTTGGAAGTCAACATATTTCCCGCCGTCATGTACGAG
TTGGATATTCACCTGAGGAGGGGGGTAGCTGGGTCTATTATGCGATATTT
CCGATTTGCGCCCTGCGTCACCGCGTTCCAGGTGTCTTGCTTCAGACACT
TGGAAGTCAACATATTTCCCGCCGTCATGTACGAGTTGGATATTCACCTG
AGGAGGGGGGTAGCTGGGTCTATTATGCGATATTTC
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