mRNA_H-elongata_contig148141.3246.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148141.3246.1
Unique NamemRNA_H-elongata_contig148141.3246.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148141.3246.1 vs. uniprot
Match: D8LS15_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS15_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.900e-27
Identity = 49/76 (64.47%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:    1 LSLYISVPRRMEPRQGTPPTMVLYPEACNQLRVYAFFKGKDGR-WKTYKNKVYSVSSGRKKEFTLTALNANIRPYL 225
            +S ++    RMEPR+GTPPT V +PE C  LRVYAFF+ KDG+ WK+YK+KVYSV+ GRK+E+TLTALNANI+PY+
Sbjct:   34 VSYFLMKDHRMEPRRGTPPTTVYFPEGCKNLRVYAFFQAKDGQTWKSYKDKVYSVN-GRKREYTLTALNANIKPYI 108
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BLAST of mRNA_H-elongata_contig148141.3246.1 vs. uniprot
Match: A0A6H5KW90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW90_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 3.080e-25
Identity = 47/76 (61.84%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:    1 LSLYISVPRRMEPRQGTPPTMVLYPEACNQLRVYAFFKGKDGR-WKTYKNKVYSVSSGRKKEFTLTALNANIRPYL 225
            +S ++    RMEPR+GTPPT V +PE C  LRVYAFF+ KDG+ WK+YK+KVYS++ GRK+E+TLTALN NI+PY+
Sbjct:  116 VSYFLMKDHRMEPRRGTPPTTVYFPEGCKNLRVYAFFQAKDGQTWKSYKDKVYSIN-GRKREYTLTALNVNIKPYI 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148141.3246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LS15_ECTSI5.900e-2764.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW90_9PHAE3.080e-2561.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148141contigH-elongata_contig148141:156..383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_001760.1
Exons1
Model size228
Cds size198
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.7588892-UTR-H-elongata_contig148141:155..1851622929877.7588892-UTR-H-elongata_contig148141:155..185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148141 156..185 +
1691679192.3228922-UTR-H-elongata_contig148141:155..1851691679192.3228922-UTR-H-elongata_contig148141:155..185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig148141 156..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.7751493-CDS-H-elongata_contig148141:185..3831622929877.7751493-CDS-H-elongata_contig148141:185..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148141 186..383 +
1691679192.3313954-CDS-H-elongata_contig148141:185..3831691679192.3313954-CDS-H-elongata_contig148141:185..383Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148141 186..383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148141.3246.1prot_H-elongata_contig148141.3246.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148141 186..383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148141.3246.1

>prot_H-elongata_contig148141.3246.1 ID=prot_H-elongata_contig148141.3246.1|Name=mRNA_H-elongata_contig148141.3246.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
MEPRQGTPPTMVLYPEACNQLRVYAFFKGKDGRWKTYKNKVYSVSSGRKK
EFTLTALNANIRPYL*
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mRNA from alignment at H-elongata_contig148141:156..383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148141.3246.1 ID=mRNA_H-elongata_contig148141.3246.1|Name=mRNA_H-elongata_contig148141.3246.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig148141:156..383+ (Himanthalia elongata Himel1 dioecious)
CTCTCTCTATATATTTCCGTGCCTCGCAGAATGGAACCGAGACAAGGCAC
GCCTCCGACGATGGTGCTCTACCCGGAGGCGTGCAATCAGCTTAGAGTCT
ACGCCTTCTTCAAGGGCAAAGACGGGAGGTGGAAGACCTACAAGAACAAG
GTGTACTCGGTCAGCAGCGGCCGGAAAAAGGAGTTTACACTGACGGCCCT
CAACGCGAATATCAGGCCCTACTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig148141:156..383+

>mRNA_H-elongata_contig148141.3246.1 ID=mRNA_H-elongata_contig148141.3246.1|Name=mRNA_H-elongata_contig148141.3246.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig148141:156..383+ (Himanthalia elongata Himel1 dioecious)
ATGGAACCGAGACAAGGCACGCCTCCGACGATGGTGCTCTACCCGGAGGC
GTGCAATCAGCTTAGAGTCTACGCCTTCTTCAAGGGCAAAGACGGGAGGT
GGAAGACCTACAAGAACAAGGTGTACTCGGTCAGCAGCGGCCGGAAAAAG
GAGTTTACACTGACGGCCCTCAACGCGAATATCAGGCCCTACTTGTGAAT
GGAACCGAGACAAGGCACGCCTCCGACGATGGTGCTCTACCCGGAGGCGT
GCAATCAGCTTAGAGTCTACGCCTTCTTCAAGGGCAAAGACGGGAGGTGG
AAGACCTACAAGAACAAGGTGTACTCGGTCAGCAGCGGCCGGAAAAAGGA
GTTTACACTGACGGCCCTCAACGCGAATATCAGGCCCTACTTGTGA
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