mRNA_H-elongata_contig148070.3239.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig148070.3239.1
Unique NamemRNA_H-elongata_contig148070.3239.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A2K3NQF8_TRIPR (Uncharacterized protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3NQF8_TRIPR)

HSP 1 Score: 57.8 bits (138), Expect = 4.180e-9
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 VLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFKSASS 177
            +L E   KS   G   + CLTD+W+  +R+A++DL AGPF WGP+ GGEG ++ +S
Sbjct:   39 LLLERVLKSADYGGFQAECLTDTWIGKDRWAFIDLSAGPFSWGPAVGGEGVRTEAS 94
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A1E5VD04_9POAL (Uncharacterized protein n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VD04_9POAL)

HSP 1 Score: 60.1 bits (144), Expect = 4.410e-9
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LRDVLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFK 165
            + D+LD   + S   G     CLTD+W+  ER+A+VDL AGPF WGPS GG+G +
Sbjct:  273 MHDILDTALKSSGLKGLHAE-CLTDTWIGSERFAFVDLSAGPFAWGPSVGGDGVR 326
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A2N9G3L7_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9G3L7_FAGSY)

HSP 1 Score: 59.7 bits (143), Expect = 5.870e-9
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 VLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFKSASS 177
            +L E   KS   G   + CLTD+W+  +R+A++DL AGPF WGP+ GGEG ++ SS
Sbjct:   58 LLYEKGLKSENFGDLHAECLTDTWIGNDRWAFIDLSAGPFAWGPAVGGEGVRTESS 113
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A4Y7KDA1_PAPSO (Uncharacterized protein n=4 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KDA1_PAPSO)

HSP 1 Score: 58.9 bits (141), Expect = 1.130e-8
Identity = 28/56 (50.00%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:   10 VLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFKSASS 177
            +L E   KS       + CLTD+WV G R+A++DL AGPF WGPS GGEG ++  S
Sbjct:  371 LLLEKELKSGEPAGLQAECLTDTWVGGNRWAFIDLSAGPFTWGPSVGGEGVRTVHS 426
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A1U8BAW3_NELNU (uncharacterized protein LOC104612653 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8BAW3_NELNU)

HSP 1 Score: 58.5 bits (140), Expect = 1.550e-8
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:   10 VLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFK 165
            +L E   KS       S CLTD+W+  ER+A++DL AGPF WGP+ GGEG +
Sbjct:  370 ILLEKELKSGELAGLHSECLTDTWIGAERWAFIDLSAGPFSWGPAVGGEGVR 421
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A3L6QCZ0_PANMI (Uncharacterized protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6QCZ0_PANMI)

HSP 1 Score: 58.2 bits (139), Expect = 2.080e-8
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LRDVLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFK 165
            + D+L+   + S   G     CLTD+W+  ER+A+VDL AGPF WGPS GG+G +
Sbjct:   93 MHDILENALKSSGLKGLHAE-CLTDTWIGRERFAFVDLSAGPFTWGPSVGGDGVR 146
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: UPI000DF4DBA0 (uncharacterized protein LOC112881624 isoform X3 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4DBA0)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 LRDVLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFK 165
            + D+L+   + S   G     CLTD+W+  ER+A+VDL AGPF WGPS GG+G +
Sbjct:  182 MHDILENALKSSGLKGLHAE-CLTDTWIGRERFAFVDLSAGPFTWGPSVGGDGVR 235
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BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A835QPU2_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QPU2_VANPL)

HSP 1 Score: 57.8 bits (138), Expect = 2.700e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   58 SACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFK 165
            S CLTD+W+ G R+A++DL AGPF WGP+ GGEG +
Sbjct:  195 SECLTDTWIGGNRWAFIDLSAGPFSWGPAVGGEGVR 230
[Close]
BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A2Z6PCI4_TRISU (Uncharacterized protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6PCI4_TRISU)

HSP 1 Score: 57.8 bits (138), Expect = 2.880e-8
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   10 VLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFKSASS 177
            +L E   KS   G   + CLTD+W+  +R+A++DL AGPF WGP+ GGEG ++ +S
Sbjct:   85 LLLERVLKSADYGGFQAECLTDTWIGKDRWAFIDLSAGPFSWGPAVGGEGVRTEAS 140
[Close]
BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Match: A0A835QS92_VANPL (Uncharacterized protein n=3 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QS92_VANPL)

HSP 1 Score: 57.8 bits (138), Expect = 2.890e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:   58 SACLTDSWVSGERYAWVDLQAGPFEWGPSSGGEGFK 165
            S CLTD+W+ G R+A++DL AGPF WGP+ GGEG +
Sbjct:  305 SECLTDTWIGGNRWAFIDLSAGPFSWGPAVGGEGVR 340
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig148070.3239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3NQF8_TRIPR4.180e-946.43Uncharacterized protein n=1 Tax=Trifolium pratense... [more]
A0A1E5VD04_9POAL4.410e-949.09Uncharacterized protein n=1 Tax=Dichanthelium olig... [more]
A0A2N9G3L7_FAGSY5.870e-948.21Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A4Y7KDA1_PAPSO1.130e-850.00Uncharacterized protein n=4 Tax=Papaver somniferum... [more]
A0A1U8BAW3_NELNU1.550e-850.00uncharacterized protein LOC104612653 n=1 Tax=Nelum... [more]
A0A3L6QCZ0_PANMI2.080e-847.27Uncharacterized protein n=1 Tax=Panicum miliaceum ... [more]
UPI000DF4DBA02.110e-847.27uncharacterized protein LOC112881624 isoform X3 n=... [more]
A0A835QPU2_VANPL2.700e-861.11Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A2Z6PCI4_TRISU2.880e-846.43Uncharacterized protein n=2 Tax=Trifolium subterra... [more]
A0A835QS92_VANPL2.890e-861.11Uncharacterized protein n=3 Tax=Vanilla planifolia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig148070contigH-elongata_contig148070:649..825 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue4.1e-07
Seed eggNOG ortholog4432.XP_010278472.1
EggNOG OGs28I8K@1,2QQIX@2759,37HNV@33090,3G84M@35493
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929877.188295-CDS-H-elongata_contig148070:648..8251622929877.188295-CDS-H-elongata_contig148070:648..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148070 649..825 +
1691679192.145142-CDS-H-elongata_contig148070:648..8251691679192.145142-CDS-H-elongata_contig148070:648..825Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig148070 649..825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig148070.3239.1prot_H-elongata_contig148070.3239.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig148070 649..825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig148070.3239.1

>prot_H-elongata_contig148070.3239.1 ID=prot_H-elongata_contig148070.3239.1|Name=mRNA_H-elongata_contig148070.3239.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
LRDVLDEHRRKSTTSGSSGSACLTDSWVSGERYAWVDLQAGPFEWGPSSG
GEGFKSASS
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mRNA from alignment at H-elongata_contig148070:649..825+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig148070.3239.1 ID=mRNA_H-elongata_contig148070.3239.1|Name=mRNA_H-elongata_contig148070.3239.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig148070:649..825+ (Himanthalia elongata Himel1 dioecious)
CTCCGGGACGTGCTCGACGAGCACAGGAGGAAGAGCACGACAAGCGGCTC
CAGTGGGAGCGCTTGCTTGACCGATTCGTGGGTGAGTGGAGAGCGCTACG
CGTGGGTGGATCTCCAGGCCGGGCCGTTCGAGTGGGGCCCGTCCTCGGGC
GGCGAGGGATTCAAGTCTGCGTCATCC
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Coding sequence (CDS) from alignment at H-elongata_contig148070:649..825+

>mRNA_H-elongata_contig148070.3239.1 ID=mRNA_H-elongata_contig148070.3239.1|Name=mRNA_H-elongata_contig148070.3239.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig148070:649..825+ (Himanthalia elongata Himel1 dioecious)
CTCCGGGACGTGCTCGACGAGCACAGGAGGAAGAGCACGACAAGCGGCTC
CAGTGGGAGCGCTTGCTTGACCGATTCGTGGGTGAGTGGAGAGCGCTACG
CGTGGGTGGATCTCCAGGCCGGGCCGTTCGAGTGGGGCCCGTCCTCGGGC
GGCGAGGGATTCAAGTCTGCGTCATCCCTCCGGGACGTGCTCGACGAGCA
CAGGAGGAAGAGCACGACAAGCGGCTCCAGTGGGAGCGCTTGCTTGACCG
ATTCGTGGGTGAGTGGAGAGCGCTACGCGTGGGTGGATCTCCAGGCCGGG
CCGTTCGAGTGGGGCCCGTCCTCGGGCGGCGAGGGATTCAAGTCTGCGTC
ATCC
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