mRNA_H-elongata_contig147910.3231.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: D7G073_ECTSI (Putative nosD copper-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G073_ECTSI) HSP 1 Score: 132 bits (331), Expect = 5.680e-35 Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNECVDVKEG +DT+IETNYCTGQLDE+S GIDSRA+ T IRYNKVVG KGAGVRLGGHKVGR+QYG+NC+
Sbjct: 267 GNECVDVKEGAVDTVIETNYCTGQLDEESAGIDSRASSTTIRYNKVVGCKGAGVRLGGHKVGREQYGVNCK 337
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5JK02_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK02_9PHAE) HSP 1 Score: 134 bits (336), Expect = 6.780e-35 Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNECVDVKEG +DT+IETNYCTGQLDEDS GIDSRA+ T IRYNKVVG KGAGVRLGGHKVGR+QYGINC+
Sbjct: 580 GNECVDVKEGAVDTVIETNYCTGQLDEDSAGIDSRASSTTIRYNKVVGCKGAGVRLGGHKVGREQYGINCK 650
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A1F7I8U6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_12 TaxID=1802056 RepID=A0A1F7I8U6_9BACT) HSP 1 Score: 83.6 bits (205), Expect = 1.390e-17 Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGIN 207
GNECVD+KEG+ I+E N CTGQ D++SGG+DSR N I R+N+V G+ GAGVRLGG + + GIN
Sbjct: 189 GNECVDIKEGSWGNIVEYNNCTGQKDKESGGMDSRGNRNIFRFNEVYGNSGAGVRLGGDE---NSDGIN 254
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5K4I7_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I7_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 1.560e-17 Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNE ++VKEG++DT+IE N Q DE+SGGI SR + +IIRYN + + GAGVRLGGH V +YG N Q
Sbjct: 15 GNEGIEVKEGSVDTLIEYNEVHMQYDEESGGIGSRGDRSIIRYNHIQDTDGAGVRLGGHIVDGIEYGANNQ 85
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC) HSP 1 Score: 84.3 bits (207), Expect = 2.100e-17 Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 4 NECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGIN 207
NECVDVKEG+ D ++E N C+ QLD +S G DSR +D RYN+V GAG+R+GGHK+ YG N
Sbjct: 250 NECVDVKEGSTDVLVEYNACSNQLDTNSAGFDSRTDDVTFRYNEVSNCAGAGIRIGGHKIDGKTYGEN 317
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: UPI00036CBE5E (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036CBE5E) HSP 1 Score: 83.6 bits (205), Expect = 2.400e-17 Identity = 38/68 (55.88%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGI 204
GNECVD+KEG + ++E N C GQ D DSGG D+R + IIRYN +KGAGVR+GG+ V QYG+
Sbjct: 248 GNECVDIKEGAENNLVENNICAGQQDPDSGGFDARGDYNIIRYNISYENKGAGVRIGGNLVKGKQYGV 315
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5L3G3_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G3_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 4.500e-17 Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNE +DVKEGT+DT+IE N Q D+DSGGI SR + +IIRYN + + GAGVRLGGH V +YG N Q
Sbjct: 244 GNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVDGIEYGKNNQ 314
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: D7FIS5_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS5_ECTSI) HSP 1 Score: 82.8 bits (203), Expect = 7.280e-17 Identity = 42/71 (59.15%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNE +DVKEGT+DT+IE N Q D+DSGGI SR + +IIRYN + + GAGVRLGGH V +YG N Q
Sbjct: 67 GNEGIDVKEGTVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNYIEDTDGAGVRLGGHTVDGIEYGKNNQ 137
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 7.350e-17 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNE +DVKEG++DT+IE N Q D+DSGGI SR + +IIRYN + + GAGVRLGGH V +YG N Q
Sbjct: 249 GNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVDSTEYGKNNQ 319
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Match: A0A6H5L8H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8H5_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 1.870e-16 Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKGAGVRLGGHKVGRDQYGINCQ 213
GNE +DVKEG++DT+IE N Q D+DSGGI SR + +IIRYN + + GAGVRLGGH V +YG N Q
Sbjct: 250 GNEGIDVKEGSVDTLIEYNEVYMQYDDDSGGIGSRGDRSIIRYNHIEDTDGAGVRLGGHTVDGIEYGKNNQ 320 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147910.3231.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig147910.3231.1 >prot_H-elongata_contig147910.3231.1 ID=prot_H-elongata_contig147910.3231.1|Name=mRNA_H-elongata_contig147910.3231.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp GNECVDVKEGTMDTIIETNYCTGQLDEDSGGIDSRANDTIIRYNKVVGSKback to top mRNA from alignment at H-elongata_contig147910:287..1120- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig147910.3231.1 ID=mRNA_H-elongata_contig147910.3231.1|Name=mRNA_H-elongata_contig147910.3231.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at H-elongata_contig147910:287..1120- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig147910:287..1120- >mRNA_H-elongata_contig147910.3231.1 ID=mRNA_H-elongata_contig147910.3231.1|Name=mRNA_H-elongata_contig147910.3231.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig147910:287..1120- (Himanthalia elongata Himel1 dioecious)back to top |