mRNA_H-elongata_contig147525.3220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147525.3220.1
Unique NamemRNA_H-elongata_contig147525.3220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: D8LDM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM0_ECTSI)

HSP 1 Score: 132 bits (331), Expect = 2.550e-34
Identity = 62/85 (72.94%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLRSR 252
            G+VTPEEWCRYY+MLSA + NDD+FELMMRNAWHLPGG GA+++T+ RRVL TRADGSQT+EEVKG  G  ++DKKA+L SLRS+
Sbjct:  408 GKVTPEEWCRYYSMLSAGMPNDDDFELMMRNAWHLPGGVGAMASTTGRRVLATRADGSQTIEEVKGAAGMGNSDKKAMLNSLRSQ 492          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A7S2UU94_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU94_9STRA)

HSP 1 Score: 100 bits (248), Expect = 9.490e-23
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLR 246
            G+VTP EWCRYY ++SASI  DD FELM+RNAWH+ GG G  +N++ +RVLV  ADG QTVEE++   G    DK A++Q+L+
Sbjct:  400 GKVTPAEWCRYYGLISASIDEDDYFELMIRNAWHMSGGEGWCANSTCKRVLVNHADGKQTVEEIQNDLGMKPDDKDAMMQALK 482          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A067C837_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C837_SAPPC)

HSP 1 Score: 97.4 bits (241), Expect = 8.200e-22
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSL 243
            G+VTP+E+ RYYA +SASI +DD FELM+RNAWH+ GG G  +N++ RRVLVT  DG+QTVEEVK   G S+TDK AI  +L
Sbjct:  417 GKVTPDEFIRYYANVSASIDDDDYFELMIRNAWHISGGEGWCANSTCRRVLVTHPDGTQTVEEVKNDIGISATDKAAINANL 498          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A1W0A9S5_9STRA (Ribosome assembly protein 3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9S5_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-21
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSL 243
            G+VTP+E+ RYYA +SASI +DD FELM+RNAWH+ GG G  +NT+ RRVLVT ADG QTVEEVK   G SS D  AI  +L
Sbjct:  408 GKVTPDEFIRYYANVSASIDDDDYFELMIRNAWHISGGEGWCANTTCRRVLVTHADGRQTVEEVKNDIGVSSKDTAAINANL 489          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A1V9ZGF5_9STRA (Calcyphosin-like protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZGF5_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.900e-21
Identity = 49/85 (57.65%), Postives = 67/85 (78.82%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLRSR 252
            G+VTP+E+ RYYA +SASI +DD FELM+RNAWH+ GG G  +N++ RRVLVT  DG+QTVEEVK   G ++ DK+AI  +L+++
Sbjct:  420 GKVTPDEFIRYYANVSASIDDDDYFELMIRNAWHISGGEGWCANSTCRRVLVTHPDGTQTVEEVKNDIGIAADDKEAINANLKAQ 504          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A6G0W894_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W894_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.900e-20
Identity = 51/85 (60.00%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLRSR 252
            G+VTP E+ RYYA +SASI NDD FELM+RNAWH+ GG G  +NT+ RRVLVT ADG+QT+EEVK   G   T K AI  +L+++
Sbjct:  423 GKVTPAEFIRYYANVSASIDNDDYFELMIRNAWHISGGEGWSANTTCRRVLVTHADGTQTIEEVKNDIGI--TGKDAIAAALQAQ 505          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A662XRY8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRY8_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.130e-20
Identity = 48/85 (56.47%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLRSR 252
            G+V P E+ RYYA +SASI +DD FELM+RNAWH+ GG G ++NT+ RRVLVT ADGS TVEEVK   G  + + +AI  +L+++
Sbjct:  114 GKVHPNEFVRYYANVSASIDDDDYFELMIRNAWHMSGGEGWVANTTCRRVLVTHADGSHTVEEVKDDIGIEAGNVEAIRANLQAQ 198          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A7S2F297_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F297_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.010e-20
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLR 246
            G+VT +E+  YY  + AS+ +DD FELM+RNAWH+ GG G  SNT+ RRVLVT  DG QTVEE+K   G S  DK+ +LQ L+
Sbjct:   57 GKVTLKEFQNYYENIGASVPDDDYFELMIRNAWHISGGTGWCSNTANRRVLVTHTDGRQTVEEIKDDLGLSPDDKEGMLQRLQ 139          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A8K1FM79_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FM79_PYTOL)

HSP 1 Score: 91.7 bits (226), Expect = 9.100e-20
Identity = 49/85 (57.65%), Postives = 63/85 (74.12%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLRSR 252
            G+V P E+ RYYA +SASI +DD FELM+RNAWH+ GG G   NT+ RRVLVT ADG QTVEEVK   G S+ + +AI  +L+++
Sbjct:  409 GKVYPNEFIRYYANVSASIDDDDYFELMIRNAWHISGGEGWCENTTCRRVLVTHADGRQTVEEVKNDIGISANNVEAIRANLQAQ 493          
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Match: A0A7S2UVF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVF3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.200e-19
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGG-GALSNTSARRVLVTRADGSQTVEEVKGVPGSSSTDKKAILQSLR 246
            G+VT EE+  YYA + ASI NDD FELM+RN WHL GG G  +NT+ RRVLVT ADG QTVEE+K   G    D+  + + L+
Sbjct:    2 GRVTLEEFQNYYANVGASIDNDDYFELMIRNCWHLSGGEGWCANTANRRVLVTHADGRQTVEEIKDDLGVRKDDQATMRRMLK 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147525.3220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDM0_ECTSI2.550e-3472.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UU94_9STRA9.490e-2356.63Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067C837_SAPPC8.200e-2262.20Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1W0A9S5_9STRA1.720e-2163.41Ribosome assembly protein 3 n=1 Tax=Thraustotheca ... [more]
A0A1V9ZGF5_9STRA2.900e-2157.65Calcyphosin-like protein n=1 Tax=Achlya hypogyna T... [more]
A0A6G0W894_9STRA1.900e-2060.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A662XRY8_9STRA3.130e-2056.47Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S2F297_9STRA5.010e-2055.42Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8K1FM79_PYTOL9.100e-2057.65Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2UVF3_9STRA1.200e-1955.42Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147525contigH-elongata_contig147525:948..1464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue4.1e-29
Seed eggNOG ortholog2880.D8LDM0
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.4306664-CDS-H-elongata_contig147525:947..11101622929875.4306664-CDS-H-elongata_contig147525:947..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147525 948..1110 -
1691679191.5183601-CDS-H-elongata_contig147525:947..11101691679191.5183601-CDS-H-elongata_contig147525:947..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147525 948..1110 -
1622929875.447839-CDS-H-elongata_contig147525:1375..14641622929875.447839-CDS-H-elongata_contig147525:1375..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147525 1376..1464 -
1691679191.5276432-CDS-H-elongata_contig147525:1375..14641691679191.5276432-CDS-H-elongata_contig147525:1375..1464Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147525 1376..1464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147525.3220.1prot_H-elongata_contig147525.3220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147525 948..1464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147525.3220.1

>prot_H-elongata_contig147525.3220.1 ID=prot_H-elongata_contig147525.3220.1|Name=mRNA_H-elongata_contig147525.3220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
GQVTPEEWCRYYAMLSASITNDDEFELMMRNAWHLPGGGALSNTSARRVL
VTRADGSQTVEEVKGVPGSSSTDKKAILQSLRSR
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mRNA from alignment at H-elongata_contig147525:948..1464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147525.3220.1 ID=mRNA_H-elongata_contig147525.3220.1|Name=mRNA_H-elongata_contig147525.3220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=517bp|location=Sequence derived from alignment at H-elongata_contig147525:948..1464- (Himanthalia elongata Himel1 dioecious)
GGACAGGTTACTCCTGAAGAATGGTGCCGTTACTACGCCATGCTTTCCGC CAGCATCACGAACGACGACGAGTTTGAGCTCATGATGAGGTAAGTTTCTC CGACAAGATGATGGCGAACTCTGACTGCAAAAGCTTTCGGGAGCGTTTTG ATCGGTATTATACGAGAGAAGCCACTCAGCTGCGTGGACATTACAACGCT CTCATCAGCATTCTGATCATTCAAAGACGACGATTGTCTTTGGTGTTTGG ATGTGTAGAACCTCGGTATCAAGAAAAGGTTGCGCGTACTAGTTTTTAGT TAGTCCTCCTCTTAGACTTATGTGTGTGTCTCAATACGATCTTGCTCTGC GCAGAAACGCGTGGCACCTGCCCGGAGGGGGTGCCTTGTCCAACACCAGT GCCAGAAGGGTGCTGGTGACCCGAGCGGACGGGAGTCAAACAGTTGAGGA GGTGAAAGGGGTGCCGGGCTCGAGTAGCACGGACAAGAAGGCTATTCTGC AAAGCCTCCGCTCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig147525:948..1464-

>mRNA_H-elongata_contig147525.3220.1 ID=mRNA_H-elongata_contig147525.3220.1|Name=mRNA_H-elongata_contig147525.3220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig147525:948..1464- (Himanthalia elongata Himel1 dioecious)
GGACAGGTTACTCCTGAAGAATGGTGCCGTTACTACGCCATGCTTTCCGC
CAGCATCACGAACGACGACGAGTTTGAGCTCATGATGAGGGACAGGTTAC
TCCTGAAGAATGGTGCCGTTACTACGCCATGCTTTCCGCCAGCATCACGA
ACGACGACGAGTTTGAGCTCATGATGAGAAACGCGTGGCACCTGCCCGGA
GGGGGTGCCTTGTCCAACACCAGTGCCAGAAGGGTGCTGGTGACCCGAGC
GGACGGGAGTCAAACAGTTGAGGAGGTGAAAGGGGTGCCGGGCTCGAGTA
GCACGGACAAGAAGGCTATTCTGCAAAGCCTCCGCTCAAGGAAACGCGTG
GCACCTGCCCGGAGGGGGTGCCTTGTCCAACACCAGTGCCAGAAGGGTGC
TGGTGACCCGAGCGGACGGGAGTCAAACAGTTGAGGAGGTGAAAGGGGTG
CCGGGCTCGAGTAGCACGGACAAGAAGGCTATTCTGCAAAGCCTCCGCTC
AAGG
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