mRNA_H-elongata_contig147504.3218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147504.3218.1
Unique NamemRNA_H-elongata_contig147504.3218.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147504.3218.1 vs. uniprot
Match: D8LG24_ECTSI (Protein disulfide-isomerase fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG24_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.740e-23
Identity = 53/88 (60.23%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 LQFFKGTVESAAEHKPPRTTPGLVDYFKAIKDGVEPPKPAPPAPKKKSSPPLIEPENSEVTALTADTMDAFLEANKFAVVEFYAPWCG 264
             + F+GT+ESA EHKPPR  P L+DYFKAIKDGVEPP P           PL+EPE+SEVT LT      F+ A +FAVVEFYAPWCG
Sbjct:  114 FRMFEGTLESAKEHKPPRVMPQLMDYFKAIKDGVEPP-PXXXXXXXXXXXPLVEPEDSEVTVLTKANFQEFV-AGEFAVVEFYAPWCG 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147504.3218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LG24_ECTSI4.740e-2360.23Protein disulfide-isomerase fusion protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147504contigH-elongata_contig147504:546..1341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue3.1e-19
Seed eggNOG ortholog2880.D8LG24
Preferred namePDIL1-1
KEGG koko:K09580
KEGG Pathwayko04141,map04141
GOsGO:0000003,GO:0000322,GO:0000323,GO:0000325,GO:0000326,GO:0000327,GO:0003006,GO:0003674,GO:0003756,GO:0003824,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005788,GO:0005794,GO:0005886,GO:0006457,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0009314,GO:0009416,GO:0009505,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009642,GO:0009644,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009892,GO:0009960,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010043,GO:0010109,GO:0010154,GO:0010205,GO:0010941,GO:0012505,GO:0016020,GO:0016853,GO:0016860,GO:0016864,GO:0019222,GO:0022414,GO:0030312,GO:0031090,GO:0031323,GO:0031324,GO:0031974,GO:0032501,GO:0032502,GO:0033554,GO:0034975,GO:0034976,GO:0042221,GO:0042548,GO:0043067,GO:0043155,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043467,GO:0044422,GO:0044424,GO:0044432,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046686,GO:0048316,GO:0048519,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071944,GO:0098588,GO:0098805,GO:0140096,GO:1905156
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein disulfide-isomerase fusion protein
Ec32 orthologEc-21_004890.1
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.2016227-CDS-H-elongata_contig147504:545..6381622929875.2016227-CDS-H-elongata_contig147504:545..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147504 546..638 +
1691679191.4297385-CDS-H-elongata_contig147504:545..6381691679191.4297385-CDS-H-elongata_contig147504:545..638Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147504 546..638 +
1622929875.2196486-CDS-H-elongata_contig147504:1170..13411622929875.2196486-CDS-H-elongata_contig147504:1170..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147504 1171..1341 +
1691679191.4423826-CDS-H-elongata_contig147504:1170..13411691679191.4423826-CDS-H-elongata_contig147504:1170..1341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147504 1171..1341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147504.3218.1prot_H-elongata_contig147504.3218.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147504 546..1341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147504.3218.1

>prot_H-elongata_contig147504.3218.1 ID=prot_H-elongata_contig147504.3218.1|Name=mRNA_H-elongata_contig147504.3218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
LQFFKGTVESAAEHKPPRTTPGLVDYFKAIKDGVEPPKPAPPAPKKKSSP
PLIEPENSEVTALTADTMDAFLEANKFAVVEFYAPWCG
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mRNA from alignment at H-elongata_contig147504:546..1341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147504.3218.1 ID=mRNA_H-elongata_contig147504.3218.1|Name=mRNA_H-elongata_contig147504.3218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=796bp|location=Sequence derived from alignment at H-elongata_contig147504:546..1341+ (Himanthalia elongata Himel1 dioecious)
TTGCAGTTTTTCAAGGGGACGGTTGAAAGCGCCGCGGAGCACAAGCCTCC
AAGGACGACACCGGGACTGGTGGATTACTTCAAGGCCATCAAGGTTGGTA
TCCGGACCAGGATAAGACGAATATTTTACACTTAAAAGTGCGCATTTTTT
TCTACGAAGTATAGTTTTCTTTTCATTTCGATAGGACTATGACGGGATTT
ATTGATTCTATGTTATAATAAATAGTTAATGATGCTGAAACCCAACTGCC
TTCGCGCCTCTAGGCCCCTCGGGCAATCAAATTTGCCACTTTCCCCATTC
TGGCGCCGCTCTTTTTATTTTATGTTCATTCTCCCCTCCCTCCTCTTCCT
TTCCTACTTTTTTACTTCTCTCTCTCTCTCTATATATATATATTCATTTT
TCTTCTTCCCTATCTCTCTTTCGCTTCCTTTTTTCCTTTAACCCTTCTGG
AACTGGATATCAAGTTTTATATTGAATTTAATATGTAAAAAAACAGATCG
AGTTCTTTAGGGGTTAAAACATATAAATCTCATTCAAAACCCCCTCAACC
TTATATATATATTTATTTATTTCTTCTTTTTCGTGTTTTAATGGTGGCGG
TTCACGAACTTCCTCATGGAGAAAGGATGGCGTGGAACCCCCGAAACCCG
CCCCGCCGGCGCCCAAAAAGAAAAGTTCTCCGCCCCTCATTGAGCCCGAG
AACAGCGAGGTGACCGCGCTGACCGCGGACACCATGGACGCTTTCCTGGA
GGCAAATAAGTTCGCGGTCGTGGAGTTCTACGCGCCGTGGTGCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig147504:546..1341+

>mRNA_H-elongata_contig147504.3218.1 ID=mRNA_H-elongata_contig147504.3218.1|Name=mRNA_H-elongata_contig147504.3218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig147504:546..1341+ (Himanthalia elongata Himel1 dioecious)
TTGCAGTTTTTCAAGGGGACGGTTGAAAGCGCCGCGGAGCACAAGCCTCC
AAGGACGACACCGGGACTGGTGGATTACTTCAAGGCCATCAAGTTGCAGT
TTTTCAAGGGGACGGTTGAAAGCGCCGCGGAGCACAAGCCTCCAAGGACG
ACACCGGGACTGGTGGATTACTTCAAGGCCATCAAGGATGGCGTGGAACC
CCCGAAACCCGCCCCGCCGGCGCCCAAAAAGAAAAGTTCTCCGCCCCTCA
TTGAGCCCGAGAACAGCGAGGTGACCGCGCTGACCGCGGACACCATGGAC
GCTTTCCTGGAGGCAAATAAGTTCGCGGTCGTGGAGTTCTACGCGCCGTG
GTGCGGTGATGGCGTGGAACCCCCGAAACCCGCCCCGCCGGCGCCCAAAA
AGAAAAGTTCTCCGCCCCTCATTGAGCCCGAGAACAGCGAGGTGACCGCG
CTGACCGCGGACACCATGGACGCTTTCCTGGAGGCAAATAAGTTCGCGGT
CGTGGAGTTCTACGCGCCGTGGTGCGGT
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