mRNA_H-elongata_contig14750.3217.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14750.3217.1
Unique NamemRNA_H-elongata_contig14750.3217.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: D8LJZ1_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ1_ECTSI)

HSP 1 Score: 298 bits (763), Expect = 3.280e-97
Identity = 147/224 (65.62%), Postives = 183/224 (81.70%), Query Frame = 1
Query:    1 APATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
            AP T   AL +PP++AMM VD +H  TGMPYWMTI+AIT  +RT ILPIG+LAARN ARTA MKPEMD+LQ AIK DQQSSQ R+A+RYRQET+AL++K+  SL+MNAALP+VQLPLFI FFLGLR+MP+V PEFATGG LWF++LGA DPYMIFP+ TG+  + + ELGG+G ++A SS +M+AGMR M+L++ PLTM +  GVF+YWTTSN +S+ QT   K
Sbjct:   48 APETFKMALYTPPQVAMMAVDYVHATTGMPYWMTIVAITVGIRTAILPIGLLAARNGARTAAMKPEMDELQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFK 271          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A6H5J862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J862_9PHAE)

HSP 1 Score: 298 bits (763), Expect = 4.620e-95
Identity = 148/224 (66.07%), Postives = 182/224 (81.25%), Query Frame = 1
Query:    1 APATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
            AP T   AL +PP+LAMM VD +H  TGMPYWMTI+AIT  +RT ILPIG+LAARN ARTA MKPEMD LQ AIK DQQSSQ R+A+RYRQET+AL++K+  SL+MNAALP+VQLPLFI FFLGLR+MP+V PEFATGG LWF++LGA DPYMIFP+ TG+  + + ELGG+G ++A SS +M+AGMR M+L++ PLTM +  GVF+YWTTSN +S+ QT   K
Sbjct:  223 APETFKMALYTPPQLAMMAVDYVHATTGMPYWMTIIAITVGIRTAILPIGLLAARNGARTAAMKPEMDALQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFK 446          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A7S2RKG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKG9_9STRA)

HSP 1 Score: 173 bits (438), Expect = 6.570e-49
Identity = 89/216 (41.20%), Postives = 135/216 (62.50%), Query Frame = 1
Query:   34 PPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKVCS 681
            P  + M  +D +HT +GMP+WMTIMA+T +LR  +LP+ +   +N+ R   +KPE++ + E IK D +S+  +R + Y ++ +AL++KYD   + +     +QLP+F+SFF GL+ M + +PE   GG LWF +L AADP  IFP+ T  + + + ELG DGM  A     M+  MR + L+++P T  +P  VF YW+ +N  SV QT  LKV S
Sbjct:   57 PSHMVMQGIDLIHTTSGMPFWMTIMAVTISLRVAMLPVLLSTIKNARRMTQLKPELEIISERIKADPKSNDPQRQQMYSKQLQALFQKYDAHPIRSFYGIGIQLPVFMSFFFGLKSMGDFYPEIQQGGTLWFTDLAAADPTFIFPVVTTASFIFMIELGADGMD-ANQQATMKNVMRGLGLLMLPFTYQMPCAVFCYWSAANFMSVCQTLALKVPS 271          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: K3WL12_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL12_GLOUD)

HSP 1 Score: 166 bits (419), Expect = 5.520e-46
Identity = 86/223 (38.57%), Postives = 143/223 (64.13%), Query Frame = 1
Query:    7 ATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
            A + F LS   ++A+  +D +H  TG+P+W TI+A TFA+RT   PI V++ RNSA+    +P+M++L+  +  + Q       + ++ + +AL KK+D +  +    P+ Q+P+F+ FF GL+++ + FPE++T G LWF +L AADP +  P+ +    +   ELGG+ +       Q++ GMRA+++V+IP+TMN   G+F+YW +SNLF+V QTA L+V
Sbjct:  101 ADLGFGLS---DIAIRSLDVIHATTGLPWWATIIATTFAVRTVFFPITVISMRNSAKMKAFQPDMEKLKAEMDLNPQKDP-NTVKEFQTKYKALMKKHDVNPFLGMITPMSQIPVFLGFFWGLQEIAKYFPEYSTEGTLWFNDLSAADPTLALPVISSALMVASVELGGEALP-EDYKDQVKFGMRALAVVMIPITMNFSSGIFVYWVSSNLFTVVQTAALRV 318          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A7S3UGU2_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UGU2_9CHLO)

HSP 1 Score: 163 bits (413), Expect = 2.290e-45
Identity = 87/207 (42.03%), Postives = 129/207 (62.32%), Query Frame = 1
Query:   58 VDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELG-GDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
            ++ +H  TGMP+W TI A TFALRT + P+ +   +N+A+ ++ +PE+++L E +K  Q SS  +  E+Y+ + + ++KKYDC  + +    LVQ P FI FF+ LR M E  P FA GG LWF +L  ADP    P+   LT L   ELG  DGM    +   M+  MR +S+ +IPLT ++P GV +YW ++N FS+ Q AL+K+
Sbjct:   96 LEFVHLQTGMPWWATIAATTFALRTLLFPVVIYQIKNTAKLSLARPEIEKLAEQLKM-QGSSDPKTVEKYQGQIQEVWKKYDCHPIKSFGSILVQAPTFIGFFVALRHMAEKVPTFAQGGTLWFTDLSVADPTYALPVACSLTFLATVELGVADGMQGQPNQKGMKLFMRGLSVALIPLTASMPSGVLMYWCSANAFSLLQAALMKI 301          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A6A3UNJ7_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UNJ7_9STRA)

HSP 1 Score: 162 bits (410), Expect = 8.650e-45
Identity = 87/231 (37.66%), Postives = 148/231 (64.07%), Query Frame = 1
Query:    1 APATVDFALSSP-----PELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQ-QSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
            A +T+D+A  S       +LA+  +D +H+ TG+P+W TI+A T A+RT   PI V++ RN+A+  + +P+M++L+  I ++  Q+S+   A+ ++++ +AL KK+  +   +   P+ Q+P+F+ FF GL+ + + FPE+A  G  W  +L AADPYM+ P+ +    +   ELGGD M+      +++ GMR  + +++PLTMN   G+F+YW TSN F+V Q+ALL+V
Sbjct:   84 AASTIDYASVSDLGFGLSDLAIRSLDVIHSTTGLPWWATIIATTVAVRTVFFPITVVSMRNAAKMKLFQPDMEKLKAEIDSNPTQNSET--AQEFQKKYKALMKKHGVNPFKSVLTPMSQIPVFLGFFWGLQDISKYFPEYAHEGIGWVSDLSAADPYMVLPILSSALMIASVELGGDAMA-GEMKDKLKFGMRFFAAIMVPLTMNFQSGIFVYWVTSNAFTVAQSALLRV 311          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A7S3XMS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMS5_HETAK)

HSP 1 Score: 163 bits (412), Expect = 1.480e-44
Identity = 87/213 (40.85%), Postives = 130/213 (61.03%), Query Frame = 1
Query:   34 PPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
            P +L +  VD +H +  +PYW  I+A T  LRT +LPI +   +N AR AIM+PE+++L E IK +   +  ++   YR+E +AL+KK+ CS M +    L QLP+F+S F GLRKM E + + + GGA WF +L  AD   I P     + L + ELG DGM+   ++  M+  MR M + ++PLT+NIP  V +YW TSN +++ Q   L+
Sbjct:  100 PSDLMIRYVDLLHVSLDLPYWTAIIAGTVMLRTMLLPITIKTIKNGARMAIMRPELEKLTEKIKKNTDKTMAKQMH-YRKEMQALFKKHQCSPMASLGTALTQLPIFMSAFFGLRKMGE-YVDISQGGAYWFTDLAVADATYILPAACSASFLAMVELGADGMNQGPNAATMKTVMRVMGVAMLPLTVNIPQSVLLYWCTSNAYAMAQALALR 310          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A6V2KXT4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2KXT4_9STRA)

HSP 1 Score: 162 bits (410), Expect = 5.170e-44
Identity = 89/218 (40.83%), Postives = 136/218 (62.39%), Query Frame = 1
Query:   31 SPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPE-FATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGM---RAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLK 672
            +PP+  + +++ +H  T + Y +TI+ +T   RT + P+ V + +N AR A M+PEMD L+  I     +       ++  E +AL+KKY+C+   +  LP+VQ P+F+SFF GLRKMP+ FPE  +TGG LWF +LG ADPY + P+ +  + LL+ ELG D M MA++  Q R  M   RA+ ++++P TMN    VF YWTT+N FS+ Q+   +
Sbjct:  152 NPPDQVINVINKVHEITDLSYGLTIVGLTLGFRTLMFPLFVKSQQNVARMAHMRPEMDVLKAKIDKMGGNPDTETQMKHGMEMKALFKKYNCNPFKSLMLPIVQAPIFMSFFFGLRKMPDYFPEELSTGGFLWFPDLGGADPYCVLPVISAGSFLLMMELGKDQM-MASNPEQGRMMMTFFRALGIIMVPATMNFSTAVFCYWTTNNTFSLCQSIAFR 368          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A2P4XDZ8_9STRA (Mitochondrial inner membrane protein OXA1 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XDZ8_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.000e-43
Identity = 80/212 (37.74%), Postives = 137/212 (64.62%), Query Frame = 1
Query:   40 ELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
            ++A+  +D +H  TG+P+W TI+A T A+RT   PI V++ RN+A+  + +P+M++L++ ++ +   +     E ++Q+ +AL KK+D +   +   PL Q+P+F+ FF GL+ + + FPE+A  G  W  +L AADP M  P+ + +  L   ELGG+ M+       ++ GMR  +L+++PLTMN   G+F+YW TSN+F++ QTALL++
Sbjct:  105 DIAIRSLDMIHATTGLPWWATIIATTVAVRTVFFPITVISMRNAAKMKMFQPDMEKLRDEMEANPTKTPESTRE-FQQKYKALMKKHDVNPFKSVLTPLSQIPVFLGFFWGLQDISKYFPEYAHEGIGWVTDLSAADPTMGLPIASAVLMLASVELGGEAMA-GEMKNNLKFGMRCFALMMVPLTMNFQSGIFVYWVTSNMFTLTQTALLRL 314          
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Match: A0A0P1AY12_PLAHL (Mitochondrial inner membrane protein oxa1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY12_PLAHL)

HSP 1 Score: 164 bits (416), Expect = 4.630e-43
Identity = 89/230 (38.70%), Postives = 147/230 (63.91%), Query Frame = 1
Query:    1 APATVDFALSSP-----PELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIGVLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKYDCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAADPYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMNIPVGVFIYWTTSNLFSVFQTALLKV 675
            A + VDFA  S       +LA+  +D +HT TG+P+W TI+A T A+RT   P+ V++ RN+A+  + +P+M++L+E +  +  +   + A+ ++++ RAL KK+D +   +   PL Q+P+F+ FF GL+ + + FPE+A  G  W  +L AADP M  P+ +    +   ELGGD MS +  + +M+ GMR  +L++IPLTMN   G+F+YW TSN F++ QTA++++
Sbjct:  601 ASSAVDFASVSDLGYSLSDLAIRSLDLIHTTTGLPWWATIIATTVAVRTAFFPMTVISMRNAAKMKLFQPDMEKLREEMDANP-TRDPQTAKEFQKKYRALMKKHDVNPFKSVLTPLSQIPVFLGFFWGLQDISKYFPEYAHEGVGWVSDLSAADPTMTLPVISSALMVASVELGGDAMS-SEMADKMKFGMRCFALLMIPLTMNFQSGIFVYWVTSNTFTLMQTAVMRL 828          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14750.3217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ1_ECTSI3.280e-9765.63Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral... [more]
A0A6H5J862_9PHAE4.620e-9566.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RKG9_9STRA6.570e-4941.20Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WL12_GLOUD5.520e-4638.57Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3UGU2_9CHLO2.290e-4542.03Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A6A3UNJ7_9STRA8.650e-4537.66Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
A0A7S3XMS5_HETAK1.480e-4440.85Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A6V2KXT4_9STRA5.170e-4440.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2P4XDZ8_9STRA2.000e-4337.74Mitochondrial inner membrane protein OXA1 n=1 Tax=... [more]
A0A0P1AY12_PLAHL4.630e-4338.70Mitochondrial inner membrane protein oxa1 n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14750contigH-elongata_contig14750:3249..4696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue4.1e-39
Seed eggNOG ortholog36331.EPrPI00000014229
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.Mitochondrial inner membrane protein OXA1. Source PGD
EggNOG OGs1MCWG@121069,COG0706@1,KOG1239@2759
COG Functional cat.OU
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein
Ec32 orthologEc-06_007520.1
Exons3
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14750.3217.1prot_H-elongata_contig14750.3217.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14750 3249..4696 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.0998693-CDS-H-elongata_contig14750:3248..35031622929875.0998693-CDS-H-elongata_contig14750:3248..3503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 3249..3503 -
1691679191.398976-CDS-H-elongata_contig14750:3248..35031691679191.398976-CDS-H-elongata_contig14750:3248..3503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 3249..3503 -
1622929875.1196795-CDS-H-elongata_contig14750:3955..41621622929875.1196795-CDS-H-elongata_contig14750:3955..4162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 3956..4162 -
1691679191.411646-CDS-H-elongata_contig14750:3955..41621691679191.411646-CDS-H-elongata_contig14750:3955..4162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 3956..4162 -
1622929875.1352608-CDS-H-elongata_contig14750:4471..46961622929875.1352608-CDS-H-elongata_contig14750:4471..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 4472..4696 -
1691679191.4202995-CDS-H-elongata_contig14750:4471..46961691679191.4202995-CDS-H-elongata_contig14750:4471..4696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 4472..4696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14750.3217.1

>prot_H-elongata_contig14750.3217.1 ID=prot_H-elongata_contig14750.3217.1|Name=mRNA_H-elongata_contig14750.3217.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
APATVDFALSSPPELAMMIVDGMHTATGMPYWMTIMAITFALRTTILPIG
VLAARNSARTAIMKPEMDQLQEAIKTDQQSSQIRRAERYRQETRALYKKY
DCSLMMNAALPLVQLPLFISFFLGLRKMPEVFPEFATGGALWFENLGAAD
PYMIFPLTTGLTTLLLTELGGDGMSMATSSTQMRAGMRAMSLVIIPLTMN
IPVGVFIYWTTSNLFSVFQTALLKVCSE*
back to top

mRNA from alignment at H-elongata_contig14750:3249..4696-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14750.3217.1 ID=mRNA_H-elongata_contig14750.3217.1|Name=mRNA_H-elongata_contig14750.3217.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1448bp|location=Sequence derived from alignment at H-elongata_contig14750:3249..4696- (Himanthalia elongata Himel1 dioecious)
GCACCAGCGACAGTTGATTTCGCCTTATCCTCCCCTCCCGAACTGGCGAT GATGATCGTCGATGGGATGCACACCGCTACGGGCATGCCATACTGGATGA CGATCATGGCCATCACCTTTGCGCTAAGGACGACGATACTTCCGATCGGT GTCCTGGCCGCGAGGAACTCAGCTAGGACGGCGATAATGAAGCCCGAAAT GGATCAGCTGCAAGAGGCCATCAAGGTGAGAGGTTGCGGTGTGTGTGGCC TTGCGGCGGGGGGCTGCTAACTGTGGAGACTACTGAAAGAAGTGTAGCCA TGATGAATTATCCTGAACGAAGACGTGCAGCGCGAGTAGTTTTAAGCGCG GTACAGGACACGCAACCTTTCGGCTGCAGCCGGTCTCGAGCGCGGCGTTC GACAAGATGAGCATACCACCAACGCCTGATGAGTGCCACATTGATTACCA GCGAGCTTTTGATTTTCTATTCAAATCCCACTCCCTCCGCACCCGCGCCG TGTTGCACCCTCACGAACCCCGGGAGCTGTGCAGACAGATCAGCAATCTT CGCAGATAAGAAGAGCCGAGCGCTATCGGCAGGAGACTAGAGCCTTGTAC AAGAAGTACGACTGCAGCCTCATGATGAACGCCGCGTTGCCCCTCGTACA GCTTCCCCTCTTTATCAGCTTCTTTTTGGGCCTCCGCAAGATGCCGGAAG TCTTCCCAGAGTTCGCCACCGGTGGGGCCTTGTGGTTCGAGGTCAGTCAC GGGATCCACACTGGCGTAAGAGAGGAAACAAGCTGAAAACTGTGAGCGTG GAGATTGGAAGTATTCTCAAGTTAAGGGCGTGATCCAAATAACACTTCGA CAGGTTCTCCAGAACAATATATTCATGTTATGTATACGGGGTATTGGTCA GCGATTGGTTTTAGTTTTGAACTTGTTAATATCATTTATTTACCCATAGC AAGTAGGTATTTTAGATTGGGAATGAAAAACGAAGACTTTAAAAAGCGTC AACTATTTTTTGTACATCTAAGCGGGGTGTTTCGGCTGCAGAGAAGTGTA CGTGTGCCTGGTCGGGGCGTCGCCCAGACCACGAACTCACGAGAAAAGGC GCTCTTGCTCCCCGGTAATACCGAACCTTTCTTTCAAGATACTAGTATAT ATTTATACCTAGTTAATCACCTTGTATGCCGCCATTTTTGCAGAATCTTG GCGCCGCCGACCCGTACATGATCTTCCCGCTGACTACCGGGTTGACGACG CTGCTGCTGACTGAGTTGGGCGGAGACGGCATGAGCATGGCGACGAGCTC GACCCAAATGCGCGCTGGGATGCGCGCGATGTCGTTAGTGATCATACCAC TCACCATGAATATCCCGGTCGGCGTATTCATCTACTGGACAACGTCCAAC CTCTTTTCAGTTTTCCAGACGGCCCTGCTGAAGGTGTGTAGCGAGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14750:3249..4696-

>mRNA_H-elongata_contig14750.3217.1 ID=mRNA_H-elongata_contig14750.3217.1|Name=mRNA_H-elongata_contig14750.3217.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig14750:3249..4696- (Himanthalia elongata Himel1 dioecious)
GCACCAGCGACAGTTGATTTCGCCTTATCCTCCCCTCCCGAACTGGCGAT
GATGATCGTCGATGGGATGCACACCGCTACGGGCATGCCATACTGGATGA
CGATCATGGCCATCACCTTTGCGCTAAGGACGACGATACTTCCGATCGGT
GTCCTGGCCGCGAGGAACTCAGCTAGGACGGCGATAATGAAGCCCGAAAT
GGATCAGCTGCAAGAGGCCATCAAGGCACCAGCGACAGTTGATTTCGCCT
TATCCTCCCCTCCCGAACTGGCGATGATGATCGTCGATGGGATGCACACC
GCTACGGGCATGCCATACTGGATGACGATCATGGCCATCACCTTTGCGCT
AAGGACGACGATACTTCCGATCGGTGTCCTGGCCGCGAGGAACTCAGCTA
GGACGGCGATAATGAAGCCCGAAATGGATCAGCTGCAAGAGGCCATCAAG
ACAGATCAGCAATCTTCGCAGATAAGAAGAGCCGAGCGCTATCGGCAGGA
GACTAGAGCCTTGTACAAGAAGTACGACTGCAGCCTCATGATGAACGCCG
CGTTGCCCCTCGTACAGCTTCCCCTCTTTATCAGCTTCTTTTTGGGCCTC
CGCAAGATGCCGGAAGTCTTCCCAGAGTTCGCCACCGGTGGGGCCTTGTG
GTTCGAGACAGATCAGCAATCTTCGCAGATAAGAAGAGCCGAGCGCTATC
GGCAGGAGACTAGAGCCTTGTACAAGAAGTACGACTGCAGCCTCATGATG
AACGCCGCGTTGCCCCTCGTACAGCTTCCCCTCTTTATCAGCTTCTTTTT
GGGCCTCCGCAAGATGCCGGAAGTCTTCCCAGAGTTCGCCACCGGTGGGG
CCTTGTGGTTCGAGAATCTTGGCGCCGCCGACCCGTACATGATCTTCCCG
CTGACTACCGGGTTGACGACGCTGCTGCTGACTGAGTTGGGCGGAGACGG
CATGAGCATGGCGACGAGCTCGACCCAAATGCGCGCTGGGATGCGCGCGA
TGTCGTTAGTGATCATACCACTCACCATGAATATCCCGGTCGGCGTATTC
ATCTACTGGACAACGTCCAACCTCTTTTCAGTTTTCCAGACGGCCCTGCT
GAAGGTGTGTAGCGAGTAAAATCTTGGCGCCGCCGACCCGTACATGATCT
TCCCGCTGACTACCGGGTTGACGACGCTGCTGCTGACTGAGTTGGGCGGA
GACGGCATGAGCATGGCGACGAGCTCGACCCAAATGCGCGCTGGGATGCG
CGCGATGTCGTTAGTGATCATACCACTCACCATGAATATCCCGGTCGGCG
TATTCATCTACTGGACAACGTCCAACCTCTTTTCAGTTTTCCAGACGGCC
CTGCTGAAGGTGTGTAGCGAGTAA
back to top