mRNA_H-elongata_contig14750.3216.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14750.3216.1
Unique NamemRNA_H-elongata_contig14750.3216.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14750.3216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14750contigH-elongata_contig14750:58..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-06_007530.1
Exons1
Model size1008
Cds size702
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.0342703-UTR-H-elongata_contig14750:57..3631622929875.0342703-UTR-H-elongata_contig14750:57..363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14750 58..363 +
1691679191.3764837-UTR-H-elongata_contig14750:57..3631691679191.3764837-UTR-H-elongata_contig14750:57..363Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14750 58..363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929875.0526533-CDS-H-elongata_contig14750:363..10651622929875.0526533-CDS-H-elongata_contig14750:363..1065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 364..1065 +
1691679191.3864253-CDS-H-elongata_contig14750:363..10651691679191.3864253-CDS-H-elongata_contig14750:363..1065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14750 364..1065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14750.3216.1prot_H-elongata_contig14750.3216.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14750 364..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14750.3216.1

>prot_H-elongata_contig14750.3216.1 ID=prot_H-elongata_contig14750.3216.1|Name=mRNA_H-elongata_contig14750.3216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
MHALLTLKVSRGRMHGDSITPKPRPPAVKPDRRWPPPDGTQEFNKYYNTQ
QQHYQPSPQDRTDRRAALAINHPAPFPKKSWTGAVPSSTAFGPAGSRQRS
GEGGNGVGGHAASTTNLFARPAGASRVSAPGASRAEFNGKKGDRRDARDA
AGRSRQGNSDVFGGYGMGTGAMGDGGGSKPKREIRGDVDGFRARARGGGV
GSSKDAGKRVNKKGVKGDARPRDGQAGPSVAER*
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mRNA from alignment at H-elongata_contig14750:58..1065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14750.3216.1 ID=mRNA_H-elongata_contig14750.3216.1|Name=mRNA_H-elongata_contig14750.3216.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig14750:58..1065+ (Himanthalia elongata Himel1 dioecious)
TTTTTGTCAAAATGCCCGATGCCCTTGCGGAAGCTCGGCGTAAATTCCGA
GGTACTACTTGTACAAGTAGTTGGTGCATCTATCGACTAAAATGTACGAG
TGTGCCGCATGGGGTTCGTGCGGGAGGGCTTGGTCATTTGCAGTGGTTCC
AGCTTGGCCAGCCTTACTAAAAGCCCCCTATGAGCAAACAAGATCGTACG
GCAAGTGCCTTCTGTGGACAGCTTTCGCCAAGCATAACCCTAAGTAGAGC
TGGGAGTGTTGATATTCGAGTCGCATCGCCGGACGTTTTGTCCCACAACG
CTTGTAATGCACGCACTTCTCACGCTGAAGGTCTCAAGAGGGCGCATGCA
CGGCGACTCCATCACACCGAAGCCACGCCCTCCTGCCGTGAAGCCCGATC
GCCGGTGGCCTCCACCTGACGGAACCCAAGAGTTCAATAAGTATTACAAC
ACCCAGCAGCAGCACTACCAGCCATCGCCTCAAGACAGGACAGATCGAAG
GGCGGCTCTCGCCATCAACCACCCGGCACCCTTTCCGAAGAAGTCGTGGA
CCGGTGCCGTTCCTTCCTCCACCGCCTTCGGCCCTGCAGGCTCTCGCCAA
CGTAGCGGTGAAGGTGGCAACGGAGTTGGGGGACATGCAGCGTCGACGAC
GAACCTATTCGCACGCCCCGCAGGGGCCTCGCGCGTGTCGGCACCGGGTG
CATCGAGAGCAGAGTTTAACGGTAAAAAGGGTGACAGGCGCGACGCAAGG
GACGCAGCGGGTCGCTCCCGCCAAGGCAACAGCGACGTATTCGGCGGCTA
TGGTATGGGTACTGGTGCCATGGGCGACGGCGGTGGAAGCAAGCCCAAGC
GTGAGATTCGGGGAGATGTCGATGGGTTCAGAGCCAGAGCCAGAGGTGGC
GGGGTTGGTAGCTCGAAGGACGCCGGCAAGAGAGTCAACAAGAAGGGAGT
GAAGGGTGACGCGCGGCCAAGGGATGGCCAAGCGGGTCCCTCCGTTGCCG
AACGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig14750:58..1065+

>mRNA_H-elongata_contig14750.3216.1 ID=mRNA_H-elongata_contig14750.3216.1|Name=mRNA_H-elongata_contig14750.3216.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig14750:58..1065+ (Himanthalia elongata Himel1 dioecious)
ATGCACGCACTTCTCACGCTGAAGGTCTCAAGAGGGCGCATGCACGGCGA
CTCCATCACACCGAAGCCACGCCCTCCTGCCGTGAAGCCCGATCGCCGGT
GGCCTCCACCTGACGGAACCCAAGAGTTCAATAAGTATTACAACACCCAG
CAGCAGCACTACCAGCCATCGCCTCAAGACAGGACAGATCGAAGGGCGGC
TCTCGCCATCAACCACCCGGCACCCTTTCCGAAGAAGTCGTGGACCGGTG
CCGTTCCTTCCTCCACCGCCTTCGGCCCTGCAGGCTCTCGCCAACGTAGC
GGTGAAGGTGGCAACGGAGTTGGGGGACATGCAGCGTCGACGACGAACCT
ATTCGCACGCCCCGCAGGGGCCTCGCGCGTGTCGGCACCGGGTGCATCGA
GAGCAGAGTTTAACGGTAAAAAGGGTGACAGGCGCGACGCAAGGGACGCA
GCGGGTCGCTCCCGCCAAGGCAACAGCGACGTATTCGGCGGCTATGGTAT
GGGTACTGGTGCCATGGGCGACGGCGGTGGAAGCAAGCCCAAGCGTGAGA
TTCGGGGAGATGTCGATGGGTTCAGAGCCAGAGCCAGAGGTGGCGGGGTT
GGTAGCTCGAAGGACGCCGGCAAGAGAGTCAACAAGAAGGGAGTGAAGGG
TGACGCGCGGCCAAGGGATGGCCAAGCGGGTCCCTCCGTTGCCGAACGTT
AGATGCACGCACTTCTCACGCTGAAGGTCTCAAGAGGGCGCATGCACGGC
GACTCCATCACACCGAAGCCACGCCCTCCTGCCGTGAAGCCCGATCGCCG
GTGGCCTCCACCTGACGGAACCCAAGAGTTCAATAAGTATTACAACACCC
AGCAGCAGCACTACCAGCCATCGCCTCAAGACAGGACAGATCGAAGGGCG
GCTCTCGCCATCAACCACCCGGCACCCTTTCCGAAGAAGTCGTGGACCGG
TGCCGTTCCTTCCTCCACCGCCTTCGGCCCTGCAGGCTCTCGCCAACGTA
GCGGTGAAGGTGGCAACGGAGTTGGGGGACATGCAGCGTCGACGACGAAC
CTATTCGCACGCCCCGCAGGGGCCTCGCGCGTGTCGGCACCGGGTGCATC
GAGAGCAGAGTTTAACGGTAAAAAGGGTGACAGGCGCGACGCAAGGGACG
CAGCGGGTCGCTCCCGCCAAGGCAACAGCGACGTATTCGGCGGCTATGGT
ATGGGTACTGGTGCCATGGGCGACGGCGGTGGAAGCAAGCCCAAGCGTGA
GATTCGGGGAGATGTCGATGGGTTCAGAGCCAGAGCCAGAGGTGGCGGGG
TTGGTAGCTCGAAGGACGCCGGCAAGAGAGTCAACAAGAAGGGAGTGAAG
GGTGACGCGCGGCCAAGGGATGGCCAAGCGGGTCCCTCCGTTGCCGAACG
TTAG
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