mRNA_H-elongata_contig147411.3215.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147411.3215.1
Unique NamemRNA_H-elongata_contig147411.3215.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147411.3215.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.910e-25
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   22 MALDLSKS*KAPVLPINLDGDFLFALQSFSKVHGNKAIC-PRLLSSRSRRYRSSGVRLFAVKEARTMSKADRDRRASQFMQEIAVPSFIKLLEQAIDESNGAFRMPHKWKDQLHYSTLGTG 381
            MA+D  KS KAP+LPINL  DF+FAL+ F   +GNK +  P L   +S     S +   AVKEA  MS A R+  AS+ MQEIAVP FIKL+E A+    G  +MPHKWK  ++Y++LG+G
Sbjct:    1 MAVDFPKSQKAPMLPINLSEDFMFALRKFCGTYGNKTMTQPALKMLQSIPLVHSAL---AVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLGSG 118
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BLAST of mRNA_H-elongata_contig147411.3215.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.910e-16
Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:   22 MALDLSKS*KAPVLPINLDGDFLFALQSFSKVHGNKAICPRLLSSRSRRYRSSGVRLFAVKEARTMSKADRDRRASQFMQEIAVPSFIKLLEQAIDESNGAFRMPHK 342
            MA+D +KS KAP+LPI+L  DF+FAL+ F   +GNK +    L       R       AVKEA  MS A R+  AS+ MQEIAVP F KL+E A+   +G  +MPHK
Sbjct:    1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSA--LAVKEADKMSAAQRNLAASKCMQEIAVPGF-KLIEHALSTMDGPLQMPHK 104
[Close]
BLAST of mRNA_H-elongata_contig147411.3215.1 vs. uniprot
Match: A0A6H5KGQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGQ6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 7.390e-7
Identity = 24/41 (58.54%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  256 MQEIAVPSFIKLLEQAIDESNGAFRMPHKWKDQLHYSTLGT 378
            MQEIAV  FIKL+E A+   +G  +MPHKWKD ++Y+TLG+
Sbjct:    1 MQEIAVSGFIKLIEHAMSTMDGPLQMPHKWKDMVYYTTLGS 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147411.3215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KFH5_9PHAE3.910e-2550.41Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT5_9PHAE1.910e-1647.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGQ6_9PHAE7.390e-758.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147411contigH-elongata_contig147411:715..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_003920.1
Exons1
Model size563
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147411.3215.1prot_H-elongata_contig147411.3215.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147411 931..1266 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.9632971-UTR-H-elongata_contig147411:714..9301622929874.9632971-UTR-H-elongata_contig147411:714..930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147411 715..930 +
1691679191.34297-UTR-H-elongata_contig147411:714..9301691679191.34297-UTR-H-elongata_contig147411:714..930Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147411 715..930 +
1622929874.987383-UTR-H-elongata_contig147411:1266..12771622929874.987383-UTR-H-elongata_contig147411:1266..1277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147411 1267..1277 +
1691679191.3652124-UTR-H-elongata_contig147411:1266..12771691679191.3652124-UTR-H-elongata_contig147411:1266..1277Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147411 1267..1277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.9743507-CDS-H-elongata_contig147411:930..12661622929874.9743507-CDS-H-elongata_contig147411:930..1266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147411 931..1266 +
1691679191.3539693-CDS-H-elongata_contig147411:930..12661691679191.3539693-CDS-H-elongata_contig147411:930..1266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147411 931..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147411.3215.1

>prot_H-elongata_contig147411.3215.1 ID=prot_H-elongata_contig147411.3215.1|Name=mRNA_H-elongata_contig147411.3215.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MSKADRDRRASQFMQEIAVPSFIKLLEQAIDESNGAFRMPHKWKDQLHYS
TLGTGGQSRRSWHTGTYHTCILFPSALYTFEPEDSWSPGLSVPLMVVRRR
GCWEGWNEFKV*
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mRNA from alignment at H-elongata_contig147411:715..1277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147411.3215.1 ID=mRNA_H-elongata_contig147411.3215.1|Name=mRNA_H-elongata_contig147411.3215.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at H-elongata_contig147411:715..1277+ (Himanthalia elongata Himel1 dioecious)
CAGCAAGCAGCGCACATCAACATGGCTCTCGATTTATCCAAATCCTAGAA
GGCACCCGTGTTACCCATCAATCTCGACGGGGACTTCCTGTTCGCGCTCC
AGTCCTTCTCTAAAGTCCACGGAAACAAGGCGATATGTCCCAGACTGCTC
TCAAGCCGCTCCAGGCGATACCGATCGTCTGGAGTGCGCTTGTTTGCCGT
CAAGGAGGCGCGCACCATGTCGAAGGCGGACCGCGACCGGAGAGCATCGC
AGTTCATGCAAGAGATCGCCGTCCCAAGCTTCATCAAGCTACTCGAGCAA
GCAATAGACGAATCTAACGGCGCGTTCCGCATGCCTCACAAGTGGAAGGA
TCAGTTGCACTACTCTACGCTCGGGACAGGTGGGCAAAGTAGAAGGTCTT
GGCATACTGGTACATATCACACCTGCATTCTGTTTCCGAGTGCTTTGTAC
ACATTTGAACCTGAAGATAGTTGGTCCCCTGGACTGTCTGTACCTCTCAT
GGTGGTAAGAAGGCGTGGATGTTGGGAGGGTTGGAATGAGTTCAAGGTTT
AAAAAATACTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig147411:715..1277+

>mRNA_H-elongata_contig147411.3215.1 ID=mRNA_H-elongata_contig147411.3215.1|Name=mRNA_H-elongata_contig147411.3215.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig147411:715..1277+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAAGGCGGACCGCGACCGGAGAGCATCGCAGTTCATGCAAGAGAT
CGCCGTCCCAAGCTTCATCAAGCTACTCGAGCAAGCAATAGACGAATCTA
ACGGCGCGTTCCGCATGCCTCACAAGTGGAAGGATCAGTTGCACTACTCT
ACGCTCGGGACAGGTGGGCAAAGTAGAAGGTCTTGGCATACTGGTACATA
TCACACCTGCATTCTGTTTCCGAGTGCTTTGTACACATTTGAACCTGAAG
ATAGTTGGTCCCCTGGACTGTCTGTACCTCTCATGGTGGTAAGAAGGCGT
GGATGTTGGGAGGGTTGGAATGAGTTCAAGGTTTAAATGTCGAAGGCGGA
CCGCGACCGGAGAGCATCGCAGTTCATGCAAGAGATCGCCGTCCCAAGCT
TCATCAAGCTACTCGAGCAAGCAATAGACGAATCTAACGGCGCGTTCCGC
ATGCCTCACAAGTGGAAGGATCAGTTGCACTACTCTACGCTCGGGACAGG
TGGGCAAAGTAGAAGGTCTTGGCATACTGGTACATATCACACCTGCATTC
TGTTTCCGAGTGCTTTGTACACATTTGAACCTGAAGATAGTTGGTCCCCT
GGACTGTCTGTACCTCTCATGGTGGTAAGAAGGCGTGGATGTTGGGAGGG
TTGGAATGAGTTCAAGGTTTAA
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