mRNA_H-elongata_contig14737.3214.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14737.3214.1
Unique NamemRNA_H-elongata_contig14737.3214.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14737.3214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14737contigH-elongata_contig14737:2486..2982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929874.9030066-CDS-H-elongata_contig14737:2485..25511622929874.9030066-CDS-H-elongata_contig14737:2485..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14737 2486..2551 -
1691679191.315507-CDS-H-elongata_contig14737:2485..25511691679191.315507-CDS-H-elongata_contig14737:2485..2551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14737 2486..2551 -
1622929874.9195454-CDS-H-elongata_contig14737:2751..29821622929874.9195454-CDS-H-elongata_contig14737:2751..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14737 2752..2982 -
1691679191.3234031-CDS-H-elongata_contig14737:2751..29821691679191.3234031-CDS-H-elongata_contig14737:2751..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14737 2752..2982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14737.3214.1prot_H-elongata_contig14737.3214.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14737 2486..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14737.3214.1

>prot_H-elongata_contig14737.3214.1 ID=prot_H-elongata_contig14737.3214.1|Name=mRNA_H-elongata_contig14737.3214.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
QQSSSENQGDRCSRVHDRRHPHTSVRLGSTPCLQRGCFRWGHILCTACSR
VRDHALRIPSNGGGSYCIGRRCGFGTKTSPNKAEQSVVMKETPLESVR*
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mRNA from alignment at H-elongata_contig14737:2486..2982-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14737.3214.1 ID=mRNA_H-elongata_contig14737.3214.1|Name=mRNA_H-elongata_contig14737.3214.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=497bp|location=Sequence derived from alignment at H-elongata_contig14737:2486..2982- (Himanthalia elongata Himel1 dioecious)
CAGCAGAGTTCATCCGAGAATCAGGGCGACCGATGTAGCAGAGTTCATGA
TCGACGACACCCTCACACCAGCGTTAGACTCGGAAGCACGCCCTGTCTTC
AGCGAGGATGCTTCCGTTGGGGCCATATTCTTTGTACCGCTTGCAGCAGG
GTTAGGGACCACGCTCTTCGTATCCCAAGCAACGGGGGTGGGAGCTATTG
TATCGGGCGGCGCTGTGGCTTCGGCACTAAGGTAGCGGTGGTGCGGTCGA
CAAGGCAGTGGCGGTCGGAGCGGTTCCACTGGGTACAGTAATCGCTGCCG
CCATGTTTCCGATTGCCGTTGTGCAATATGTAAAGCCGGTGCAGCCGAAT
TCTTCCTCCGCTACGCATATGCCAAAGTCCACGAGGTACTCGTTGTCGCT
ATCGCACTCGTCCGTGTCGATCGCGTTGCAGACGTCCCCAAACAAGGCTG
AACAGTCCGTCGTGATGAAGGAGACGCCACTGGAGTCTGTCAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig14737:2486..2982-

>mRNA_H-elongata_contig14737.3214.1 ID=mRNA_H-elongata_contig14737.3214.1|Name=mRNA_H-elongata_contig14737.3214.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig14737:2486..2982- (Himanthalia elongata Himel1 dioecious)
CAGCAGAGTTCATCCGAGAATCAGGGCGACCGATGTAGCAGAGTTCATGA
TCGACGACACCCTCACACCAGCGTTAGACTCGGAAGCACGCCCTGTCTTC
AGCGAGGATGCTTCCGTTGGGGCCATATTCTTTGTACCGCTTGCAGCAGG
GTTAGGGACCACGCTCTTCGTATCCCAAGCAACGGGGGTGGGAGCTATTG
TATCGGGCGGCGCTGTGGCTTCGGCACTAAGCAGCAGAGTTCATCCGAGA
ATCAGGGCGACCGATGTAGCAGAGTTCATGATCGACGACACCCTCACACC
AGCGTTAGACTCGGAAGCACGCCCTGTCTTCAGCGAGGATGCTTCCGTTG
GGGCCATATTCTTTGTACCGCTTGCAGCAGGGTTAGGGACCACGCTCTTC
GTATCCCAAGCAACGGGGGTGGGAGCTATTGTATCGGGCGGCGCTGTGGC
TTCGGCACTAAGACGTCCCCAAACAAGGCTGAACAGTCCGTCGTGATGAA
GGAGACGCCACTGGAGTCTGTCAGGTAGACGTCCCCAAACAAGGCTGAAC
AGTCCGTCGTGATGAAGGAGACGCCACTGGAGTCTGTCAGGTAG
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