mRNA_H-elongata_contig147269.3207.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A835Z0K1_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K1_9STRA) HSP 1 Score: 122 bits (307), Expect = 1.880e-30 Identity = 65/122 (53.28%), Postives = 78/122 (63.93%), Query Frame = 1
Query: 1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETT----GEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
R R + G+G+QGGDLD AC+A LD+ G+GLLVP+SRGIS A DPAAAA EFRD IN AR E + PYQ+ F++F+L VL F TLKSGR+SPYFFNAG
Sbjct: 218 RARAAAPGLWILAPGIGAQGGDLDAACAAGLDANGLGLLVPISRGISAAKDPAAAAREFRDNINKARTAAAAASADQVCEQAEGMAPYQKDFIDFALSQNVLRFGSFTLKSGRQSPYFFNAG 339
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A6T5PNF4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5PNF4_HETAK) HSP 1 Score: 122 bits (305), Expect = 3.090e-30 Identity = 69/122 (56.56%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRET----TGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
R R A + GVG QGGDL+ AC A LD++G GLLVPVSRGIS A D AAAA FR++IN+AR +K + +T GE ILPYQ +F++F+L+ +VL F TLKSGR SPYFFNAG
Sbjct: 201 RARAAAPAVWILAPGVGFQGGDLEAACLAGLDAEGGGLLVPVSRGISRAPDKAAAAEGFREQINAAR--RKKIAQTQECAAGEAILPYQEEFIQFALKQEVLRFGQFTLKSGRVSPYFFNAG 320
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: D8LJU0_ECTSI (Orotidine-5'-phosphate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU0_ECTSI) HSP 1 Score: 122 bits (305), Expect = 3.830e-30 Identity = 71/134 (52.99%), Postives = 84/134 (62.69%), Query Frame = 1
Query: 1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETTGEM--------ILPYQRKFVEFSLEYQVLGF--------KLVTLKSGRESPYFFNAG 354
R R + GVG+QGGDLDEACSAALD +GMGLLVPVSRGIS ADDPAA A +DRIN+AR R R+ +LPYQR+F+EFS+ ++VL F LKS R+SPYFFNAG
Sbjct: 205 RVRAAAPDLWILAPGVGAQGGDLDEACSAALDERGMGLLVPVSRGISRADDPAAEAVALKDRINAARKRCTDQRKEPAXXXXXXXXXALLPYQREFIEFSMSHKVLKFGDFSEGGEAFFELKSKRQSPYFFNAG 338
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S1WFW6_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WFW6_ALECA) HSP 1 Score: 112 bits (279), Expect = 5.470e-27 Identity = 62/124 (50.00%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 4 QRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETTGE-------MILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
+R +TA+ L P GVG+QGGDL+ C AA+ + G GLL+P+SRGIS A DP AA +FRD IN R + + G M+ P+QR F++ +L QVL F TLKSGR SPYFFNAG
Sbjct: 93 RRANSTAWILAP-GVGAQGGDLEACCRAAISADGYGLLLPISRGISAAADPGKAAQDFRDAINKVRASLRAEAKDAGADKAAAALMLKPFQRDFIDLALASQVLKFGTFTLKSGRSSPYFFNAG 215
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: K0T5J1_THAOC (Orotidine-5'-phosphate decarboxylase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5J1_THAOC) HSP 1 Score: 109 bits (272), Expect = 3.340e-26 Identity = 60/111 (54.05%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 31 LFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR---VRKKGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
+ GVG+QGGDLD AC+A L+ G G+L+PVSRGIS + DPAA A + ++ INSAR VR++ E + I YQR F+EF+L+ VL F LKSGR SPYFFNAG
Sbjct: 228 ILAPGVGAQGGDLDAACAAGLNDHGSGMLIPVSRGISRSPDPAAEAIKLKEGINSAREAVVRRRKDEEGESQAIESYQRDFLEFALDEGVLKFGSFVLKSGRTSPYFFNAG 338
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S4J266_9STRA (Orotidine-5'-phosphate decarboxylase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J266_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.560e-26 Identity = 67/123 (54.47%), Postives = 80/123 (65.04%), Query Frame = 1
Query: 16 TTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR---VRKKGVR-------ETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
T+A+ L P GVG+QGGDLD AC A L++ G GLLVPVSRGIS A D AA + + RD IN AR ++ K E TG + PYQ++F+EFSL VL F LKSGR SPYFFNAG
Sbjct: 90 TSAWILAP-GVGAQGGDLDAACRAGLNADGTGLLVPVSRGISRAGDRAAESKKIRDAINDAREAVIKSKSYSSACDADAEPTG--VAPYQKEFLEFSLAEGVLKFGSFVLKSGRTSPYFFNAG 209
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S4MWX1_9STRA (Orotate phosphoribosyltransferase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWX1_9STRA) HSP 1 Score: 108 bits (270), Expect = 1.040e-25 Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 16 TTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR---VRKKG-------VRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
T+A+ L P GVG+QGGDLD AC A L++ G GLLVPVSRGIS A D AA + + RD IN AR ++ K V E TG + PYQ++F+EFSL VL F LKSGR SPYFFNAG
Sbjct: 90 TSAWILAP-GVGAQGGDLDAACRAGLNADGTGLLVPVSRGISRAGDRAAESKKIRDAINDAREAVIKSKSYSSACDAVAEPTG--VAPYQKEFLEFSLAEGVLKFGSFVLKSGRTSPYFFNAG 209
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A2R5GD95_9STRA (Orotate phosphoribosyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD95_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.970e-25 Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR--------VRKKGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
+ R + + GVG QGGDL+ A A L + GMGLLVPVSRGI+ A+DP AAA +FRD +N R K+ E E + P+Q++F E +L +VL F TLKSGRESPYFFNAG
Sbjct: 203 KSRAAAPSLWILAPGVGFQGGDLEAAAKAGLRADGMGLLVPVSRGIARAEDPKAAAEKFRDLLNGVRKAAEDAEPAAKRAKTEGAEEALEPFQKQFFELALRCEVLKFGKFTLKSGRESPYFFNAG 328
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A7S2QUY9_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUY9_9STRA) HSP 1 Score: 108 bits (270), Expect = 2.800e-25 Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 31 LFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSAR--VRK-KGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
+ GVG+QGGDLD AC+ LD +G +L+PVSRGIS ++D A E RD IN AR VRK KG+ E GE I +Q +F+ FSLE VL F TLKSGRESPYFFNAG
Sbjct: 218 ILSPGVGAQGGDLDAACANGLDDEGGRMLIPVSRGISRSEDRGGKAREIRDNINMAREKVRKAKGI-EGEGEGIESFQSEFINFSLEMGVLKFGTFTLKSGRESPYFFNAG 327
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Match: A0A2D4BRP6_PYTIN (Orotidine 5'-phosphate decarboxylase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRP6_PYTIN) HSP 1 Score: 108 bits (271), Expect = 3.070e-25 Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 1
Query: 1 RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADDPAAAAAEFRDRINSARVRKKGVRETTGEMILPYQRKFVEFSLEYQVLGFKLVTLKSGRESPYFFNAG 354
R R T + G+G+QGG+L+EA SA L + GMG+L+P+SRGIS A DP AA FRD IN+ R K + + QR F++F+L + VL F TLKSGR+SPYFFNAG
Sbjct: 362 RVRAVTPELWILAPGIGAQGGNLEEAVSAGLSADGMGMLIPISRGISKAADPKQAAENFRDAINAVRAAKVAAAGKSAGALGSTQRDFIKFALSFGVLKFGDFTLKSGRKSPYFFNAG 479 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147269.3207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig147269.3207.1 >prot_H-elongata_contig147269.3207.1 ID=prot_H-elongata_contig147269.3207.1|Name=mRNA_H-elongata_contig147269.3207.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp RQRLTTTAFSLFPAGVGSQGGDLDEACSAALDSKGMGLLVPVSRGISMADback to top mRNA from alignment at H-elongata_contig147269:310..1029- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig147269.3207.1 ID=mRNA_H-elongata_contig147269.3207.1|Name=mRNA_H-elongata_contig147269.3207.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=720bp|location=Sequence derived from alignment at H-elongata_contig147269:310..1029- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig147269:310..1029- >mRNA_H-elongata_contig147269.3207.1 ID=mRNA_H-elongata_contig147269.3207.1|Name=mRNA_H-elongata_contig147269.3207.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig147269:310..1029- (Himanthalia elongata Himel1 dioecious)back to top |