mRNA_H-elongata_contig147267.3206.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: D7FMI7_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMI7_ECTSI) HSP 1 Score: 184 bits (468), Expect = 2.240e-54 Identity = 96/147 (65.31%), Postives = 112/147 (76.19%), Query Frame = 1
Query: 4 QTRAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRRE-------DLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
+ R VLA LV+RAIAAGYTA VV+ DRPVLG READ+RN Y LAPR+A GRV S+TGARIG PDG+ DL + LNW D+ WLRTI KIV+K VMTRE A+EA+ HG DAVWVSNHGGRQLDT+P+TIE+LPEV+
Sbjct: 167 KNRTVLAGLVRRAIAAGYTALVVTVDRPVLGRREADLRNCYELAPRLAEGRVVSATGARIGRRPDGTMDLGQASDARPEAGKSLNWDDVHWLRTICGDMKIVVKSVMTREAAEEALAHGVDAVWVSNHGGRQLDTVPATIEILPEVV 313
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: Q9SMD8_9PHAE (Glycolate oxidase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q9SMD8_9PHAE) HSP 1 Score: 152 bits (383), Expect = 1.870e-43 Identity = 80/145 (55.17%), Postives = 95/145 (65.52%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRR-------EDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R + AQLVKRA+AAGYTA V+ D PVLG READ+RNR+ L + G S+ GA DG D + L+W+DI WLRTI KIV+KGVMT EDA EAVR G D +W+SNHG RQLDT P+TIEVLPEV+
Sbjct: 4 RVITAQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFASAGGAHASGTKDGGNDSGLAAYVASLIDRTLDWNDIKWLRTICGSMKIVVKGVMTAEDASEAVRQGVDGIWISNHGARQLDTTPATIEVLPEVV 148
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: D8LDI6_ECTSI (Glycolate Oxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDI6_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.180e-40 Identity = 79/145 (54.48%), Postives = 94/145 (64.83%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRR-------EDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R + QLVKRA+AAGYTA V+ D PVLG READ+RNR+ L + G S+ GA DG D + L+W+DI WLRTI KIV+KGVMT EDA E+VR G D +WVSNHG RQLDT P+TIEVLPEV+
Sbjct: 159 RKITEQLVKRALAAGYTALAVTVDTPVLGRREADMRNRFKLPEHLTMGNFVSAGGAHASGTKDGGNDSGLAAYVASLIDRTLDWNDIKWLRTICGSMKIVVKGVMTAEDAAESVRQGVDGIWVSNHGARQLDTTPATIEVLPEVV 303
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: A0A836CMB2_9STRA (Glycolate oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB2_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.190e-36 Identity = 76/145 (52.41%), Postives = 95/145 (65.52%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRR-------EDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R + A+LVKRA A+GYTA V+ D PVLG READVRNR+ L + G + GA DG D + L+W DI WLR+I++ IV+KGVMT EDA+EA+R+G DA+WVSNHG RQLDT+ STIE LPEV+
Sbjct: 161 RKLTAELVKRAEASGYTALAVTVDTPVLGRREADVRNRFKLPVHLTMGNFIGAGGAHAEGTKDGGKDSGLSAYVASLIDRTLSWDDIRWLRSITK-LAIVVKGVMTAEDAREALRYGVDAIWVSNHGARQLDTVSSTIEALPEVV 304
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: A0A7S2V919_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V919_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.850e-33 Identity = 71/145 (48.97%), Postives = 88/145 (60.69%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRR-------EDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R V LV+RA AAGY A V+ D PVLG READVRNR+ L P + G G+ DG D + LNW DI WLR+++ KIV+KGV T EDA+ AV + D +WVSNHG RQLDT+ +TIE+LPEV+
Sbjct: 104 RVVTLDLVRRAEAAGYKALAVTVDTPVLGRREADVRNRFKLPPHLTMGNFVGKGGSHAEGTKDGGKDSGLAAYVASLIDRTLNWEDIQWLRSVTS-LKIVVKGVQTAEDAKVAVENKVDGIWVSNHGARQLDTVAATIEMLPEVV 247
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: A0A6V1QYU9_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QYU9_HETAK) HSP 1 Score: 124 bits (311), Expect = 2.860e-31 Identity = 70/145 (48.28%), Postives = 87/145 (60.00%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRR-------EDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R V+ LV+RA AAGY AF V+ D PVLG READVRNR+ L + G S GA DG D + LNW DIAWL+ + K+V+KGVMT EDA+ A D +WVSNHG RQLDT +TIE++PE++
Sbjct: 160 RDVVLDLVRRAEAAGYKAFAVTVDTPVLGRREADVRNRFKLPTHLTMGNFASKGGAHASGTKDGGKDSGLAAYVAGLIDRTLNWEDIAWLKR-NTFMKVVVKGVMTAEDARMACEANVDGIWVSNHGARQLDTCLATIEMVPEIV 303
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: A0A7S2FX59_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FX59_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.150e-31 Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTG---ARIGPLPDGSCDLV-----IRREDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R V L+KRA AAGY A V+ D PVLG READVRN++ L + G F++TG A DG L + + LNW DI WLR ++ KIV+KGVM+ EDA+ A ++G D + VSNHG RQLDT+P+TIE+LPEV+
Sbjct: 121 REVTLDLIKRAEAAGYKALAVTVDTPVLGRREADVRNKFSLPAHLTMGN-FANTGGDHASGTKASDGGSGLAKYVASLIDKTLNWDDIQWLRKVTT-MKIVVKGVMSAEDAEVACQNGVDGILVSNHGARQLDTVPATIEILPEVV 264
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: A0A7S1UI71_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI71_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.150e-29 Identity = 68/147 (46.26%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGS---------CDLVIRREDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R V L++RA AGY AF V+ D P+LG READVRNR+ L + G + G D C +I R L W D+ WLR + KIV+KGV T EDA AVR G DA+W+SNHG RQLDT P+T E++PEV+
Sbjct: 159 REVTMDLIRRAERAGYLAFAVTVDTPLLGRREADVRNRFSLPSHLTMGNFANKGGDHSSGTKDAGAEGSGLASYCASLIDRS-LTWEDLRWLRA-NTSLKIVVKGVATAEDAAIAVREGVDAIWISNHGARQLDTTPATCEMIPEVV 303
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: A0A7S4KCV1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KCV1_9STRA) HSP 1 Score: 118 bits (295), Expect = 6.480e-29 Identity = 70/146 (47.95%), Postives = 86/146 (58.90%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVAR-------GRVFSSTGARIGPLPDGSCDLVIRRED--LNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEV 420
R + A LV+RA AGY A V+ D P LG RE DVRNR+ L + G S G + G G V D L W DI WLRTI++ IV+KG+MT EDA+EAV+ DA+WVSNHG RQLDT+ STIE+LP +
Sbjct: 163 RGITADLVRRAERAGYRALAVTVDTPCLGRREPDVRNRFKLPSHLTMKNFVEMSGDNDHSNGVKKGGNDSGLASYVASLIDRSLQWDDIHWLRTITK-LPIVVKGIMTAEDAEEAVKCKVDAIWVSNHGARQLDTVASTIELLPSI 307
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Match: W7UBQ6_9STRA (Peroxisomal glycolate oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UBQ6_9STRA) HSP 1 Score: 117 bits (294), Expect = 8.070e-29 Identity = 65/145 (44.83%), Postives = 86/145 (59.31%), Query Frame = 1
Query: 10 RAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARGRVFSSTGARIGPLPDGSCDLVIRR-------EDLNWSDIAWLRTISEGRKIVIKGVMTREDAQEAVRHGADAVWVSNHGGRQLDTIPSTIEVLPEVL 423
R + A+L +RA AGY A ++ D PVLG READVRNR+ L + + G+ DG D + L W D+ WLR+I IV+KGVMT EDA A++ G DA+WVSNHG RQLDT+ STIE+LP+++
Sbjct: 156 RELTAELARRAERAGYKALAITVDTPVLGRREADVRNRFKLPAHLTMANFAGAGGSHAEGTKDGGKDSGLAAYVASLIDRTLQWKDVQWLRSICN-LPIVVKGVMTPEDALVAMQCGVDAIWVSNHGARQLDTVASTIELLPDIV 299 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147267.3206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig147267.3206.1 >prot_H-elongata_contig147267.3206.1 ID=prot_H-elongata_contig147267.3206.1|Name=mRNA_H-elongata_contig147267.3206.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=142bp LQTRAVLAQLVKRAIAAGYTAFVVSGDRPVLGLREADVRNRYVLAPRVARback to top mRNA from alignment at H-elongata_contig147267:169..1096- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig147267.3206.1 ID=mRNA_H-elongata_contig147267.3206.1|Name=mRNA_H-elongata_contig147267.3206.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig147267:169..1096- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig147267:169..1096- >mRNA_H-elongata_contig147267.3206.1 ID=mRNA_H-elongata_contig147267.3206.1|Name=mRNA_H-elongata_contig147267.3206.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=852bp|location=Sequence derived from alignment at H-elongata_contig147267:169..1096- (Himanthalia elongata Himel1 dioecious)back to top |