mRNA_H-elongata_contig147242.3203.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147242.3203.1
Unique NamemRNA_H-elongata_contig147242.3203.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 8.990e-55
Identity = 105/266 (39.47%), Postives = 162/266 (60.90%), Query Frame = 1
Query:   25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            ++VDSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K  ++ +L+LF
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRRVSFRVMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 1.490e-54
Identity = 105/266 (39.47%), Postives = 162/266 (60.90%), Query Frame = 1
Query:   25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            ++VDSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K  ++ +L+LF
Sbjct:  420 MLVDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 684          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.610e-50
Identity = 102/267 (38.20%), Postives = 157/267 (58.80%), Query Frame = 1
Query:   25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSE----SGNLY-SFVLDLSADGYGAKE-------LAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQ-ALQSLQLF 786
            ++ DSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F  +NPRLE  +  VP++ +    +G +  S  + L A+  G +        LA+  V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D  GPFT   +GG+KY +K  D++TKW  V L+  K   ++  L+LF
Sbjct:  325 MLEDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALR-VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELF 590          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JVF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVF6_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 7.860e-49
Identity = 98/266 (36.84%), Postives = 147/266 (55.26%), Query Frame = 1
Query:   25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYG------AKELAMNAVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            ++VDSGA+ NY D  +   L+  ++D   L  P  I+ AG  +L G   G + G VT+DNG+   V   +++VPG+G NLFSV  A  KG+ T+F  +NPRLE  +V  P+++          +YS  + L  +  G      A +     V +A +WHRR+G ++ +SL +LRK+    + + G V DC VC +GK+ Q  H K A + V RPFQ      + PFTP  +GG+K  +K  D+ TKW  + L+  K  ++ SL LF
Sbjct:  599 MVVDSGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGMATLFHPDNPRLESRDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTILGDAPDALALKVESADLWHRRMGRINGKSLDVLRKKQVNSVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVHTLRPFTPTVLGGFKNATKFVDQQTKWAKIVLMKDKTCSVDSLALF 864          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5J9Q7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q7_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 6.950e-47
Identity = 97/252 (38.49%), Postives = 142/252 (56.35%), Query Frame = 1
Query:   37 SGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRS------ESGNLYSFVLDLSADGYGAKEL--AMNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTK 756
            SGA+ NY D  +   L+  ++D   L  P  I+ AG  +L G   G + G VT+DNG+   V   +++VPG+G NLFSV  A  KG+ T+F  +NPRLE  +V  P+++          +YS  + L  +  G   L  A +A+A    +A +WHRR+GH++ ++L +LRK    G+ + G V  C VC +GK+ Q  H K A + V RPFQ    D + PFTP A+GG KY +K  D+ TKW  + L+  K
Sbjct:  350 SGATDNYLDPGLTPGLRAHMRDVEHLRVPHTIVAAGQHVLKGVTTGTIFGAVTDDNGNDRHVSFRVILVPGLGTNLFSVTLAMLKGVATLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPEGPTVLGDAPDALALKVESADLWHRRMGHINGKNLDVLRKEQVNGVDYIGDVKYCSVCPLGKSAQQPHPKQATYGVLRPFQ---HDTLSPFTPTALGGSKYATKFVDQQTKWAEIVLMKDK 598          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.270e-44
Identity = 102/272 (37.50%), Postives = 146/272 (53.68%), Query Frame = 1
Query:   37 SGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLE-------GFNVTVPLRSESGNLYSFVLDLSADGYGAK----ELAMNAVANAQV----------WHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLFV 789
            SGASG+Y D  ++ +L++ L D+  + TP KI+ AGG  L GT+ G++     ++ G+   VR    VVPG+GR+LFS  TA KKG  TI   + PR+E       G  + + LR E G LY   + L  +    +    E  MN   N+ V          WHRRL H H   +    +   TG+     +  C+ C + K+ Q  H KTA H   +P Q  Y DL+GP +P A GG+ YVSK TDEY++   VYL+ TKD+A+ +L+ F+
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLYFLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFI 580          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 1.730e-42
Identity = 92/286 (32.17%), Postives = 148/286 (51.75%), Query Frame = 1
Query:   19 ATVMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMN------------------------------AVANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            A++++D+GAS N  DD +I  LK  +++  +LA P+ +   GG  L+G A G++   V + NG++  V +  LVVPG+GRN+FS     K G+  + +  NP L     T+PL+ +  ++    +D+       +  A                                A  NA  WHR L HL+ +S+ +LRK+   G+ F  +++ CD+CA+ K++QLAH +  N +   P QL Y D MG  TP+A GG+ YVSK TD Y+    +YLL    + +++L  +
Sbjct:  134 ASLLIDTGASENMLDDRLIPGLKEIMRESKELAKPKVVSVGGGHELDGNATGLIHCTVKDSNGEKKAVLLRGLVVPGLGRNVFSRAAQIKNGVKLVIEEGNPHLAVGGHTLPLKQDPLDMGMCSVDIEFQAASEQTTASTKPTSHALPDDRAIGKPDTVMLDDDLGVACAATVNANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAY 419          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.020e-40
Identity = 100/273 (36.63%), Postives = 144/273 (52.75%), Query Frame = 1
Query:   31 VDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            V++GAS    D+ +I +    L DY Q  +P+ +  AGG  L GTA G+L   V ++ G Q+ VRI   +VPG+GRN+FS  +  KKG+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +A  WHRRLGHL+A+SL ILRK  GTG+ +  ++S C VC + K +Q  H K +  +++RP QL     MGP  P A    G + YV KITD+YTK   VYLL  K    +++  +
Sbjct:  175 VNTGASETMLDNRLIPD--GNLHDYTQRNSPKIVGVAGGRQLKGTATGILHCTVKDNRGQQLRVRIQGFIVPGLGRNIFSPTSLLKKGLRCVVEESTPHLTFQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIGNMGPVNPPAKYKGGSFPYVRKITDDYTKMKKVYLLRKKSDTTEAVHTY 445          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 1.660e-40
Identity = 99/275 (36.00%), Postives = 146/275 (53.09%), Query Frame = 1
Query:   25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVPLRSESGNLYSFVLDLSADGY----GAKELA----------MNAVA----NAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAI---GGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            ++VD+GAS   FD+ +I +    L DY Q  +P+ +  AG   L GTA G+L   V ++ G Q+ VRI  L+VPG+GRN+FS  +  K+G+  + +   P L      +PL  +  +     LD++ +      G K L            NAV     +A  WHRRLGHL+A+SL ILRK  GT + +  ++S C VC + K +Q  H K +  +++RP QL   D MGP  P A    G + Y  K+TD+YTK   VYLL  K    +++  +
Sbjct:  208 LLVDTGASEPMFDNRLIPD--GNLHDYTQRNSPKIVDVAGERQLKGTATGILHCTVKDNRGQQLRVRIQGLIVPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTY 480          
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 2.160e-39
Identity = 109/387 (28.17%), Postives = 161/387 (41.60%), Query Frame = 1
Query:   25 VMVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGVLQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPRLEGFNVTVP--------------------------------------LRSESGNLY--------------------------SFVLDLSA----DGYGAKELAMNA-----------------------------------------------------------------VANAQVWHRRLGHLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNRPFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSLQLF 786
            +++DSGA+ NY D A+   ++  ++D   L  P  I+TAG  +L+G   GVL G VT+D+G    V   +++VPG+G NLFSV  A   G+ ++F   NPRLE  N  VP                                      LR E+ +L+                            V D SA     G G    ++ A                                                                 V  A +WHRR+GH++ +SL +LR++  +GI + G V DC  C +GK+ Q  H K A + V+ PFQL + D +GPFTP A+GG+KY +K  D++TKW  V L+  K  ++ +L+LF
Sbjct:  420 MLMDSGATDNYLDPALTPGVRAHMRDIEDLRIPLPIITAGQHVLHGVTTGVLFGTVTDDSGQDRQVSFRVVLVPGLGTNLFSVTAALSNGVASLFYPGNPRLESANAVVPMKIQGVNNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGHVQDCSACPLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELF 806          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147242.3203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J842_9PHAE8.990e-5539.47Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJN3_9PHAE1.490e-5439.47Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE1.610e-5038.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVF6_9PHAE7.860e-4936.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9Q7_9PHAE6.950e-4738.49gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KY84_9PHAE1.270e-4437.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYD3_9PHAE1.730e-4232.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG5_9PHAE1.020e-4036.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF6_9PHAE1.660e-4036.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE2.160e-3928.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147242contigH-elongata_contig147242:802..1590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score83.2
Seed ortholog evalue1.9e-13
Seed eggNOG ortholog4530.OS08T0125300-01
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size762
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.9427354-UTR-H-elongata_contig147242:801..8281622929873.9427354-UTR-H-elongata_contig147242:801..828Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147242 802..828 +
1691679190.8991008-UTR-H-elongata_contig147242:801..8281691679190.8991008-UTR-H-elongata_contig147242:801..828Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig147242 802..828 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.959741-CDS-H-elongata_contig147242:828..15901622929873.959741-CDS-H-elongata_contig147242:828..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147242 829..1590 +
1691679190.909938-CDS-H-elongata_contig147242:828..15901691679190.909938-CDS-H-elongata_contig147242:828..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147242 829..1590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147242.3203.1prot_H-elongata_contig147242.3203.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147242 829..1590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147242.3203.1

>prot_H-elongata_contig147242.3203.1 ID=prot_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MVDSGASGNYFDDAIIRNLKHRLQDYVQLATPRKILTAGGALLNGTAAGV
LQGLVTNDNGDQIIVRIDILVVPGIGRNLFSVITATKKGIVTIFDFENPR
LEGFNVTVPLRSESGNLYSFVLDLSADGYGAKELAMNAVANAQVWHRRLG
HLHAQSLGILRKRYGTGITFEGAVSDCDVCAVGKAQQLAHTKTANHKVNR
PFQLCYGDLMGPFTPVAIGGYKYVSKITDEYTKWTAVYLLTTKDQALQSL
QLFV
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mRNA from alignment at H-elongata_contig147242:802..1590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147242.3203.1 ID=mRNA_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig147242:802..1590+ (Himanthalia elongata Himel1 dioecious)
AGCGTCAACAGCAACCTCGCCACCGTCATGGTGGACAGCGGAGCGTCAGG AAACTACTTTGACGACGCTATCATCCGTAACCTCAAGCACCGTCTGCAGG ACTACGTGCAACTCGCTACGCCCCGCAAGATTCTCACTGCAGGGGGGGCT CTGCTGAATGGTACGGCGGCTGGCGTGTTGCAAGGACTTGTCACCAACGA CAACGGCGACCAAATTATCGTTCGGATCGATATCTTGGTGGTGCCCGGGA TTGGGCGCAACCTGTTCTCGGTGATAACAGCAACCAAAAAGGGCATTGTC ACCATCTTCGACTTCGAAAATCCCAGACTGGAGGGATTCAACGTCACCGT GCCGCTACGGAGCGAGAGCGGCAACCTCTATTCGTTCGTGCTGGACTTGA GTGCGGACGGGTATGGCGCGAAAGAGCTAGCAATGAACGCAGTCGCCAAT GCCCAGGTGTGGCACCGACGGTTGGGTCATCTCCATGCGCAGAGCCTGGG CATTCTACGCAAGCGATACGGCACTGGCATCACCTTCGAGGGGGCCGTCT CGGACTGCGACGTTTGCGCCGTGGGGAAGGCTCAACAGCTGGCTCATACC AAAACGGCCAATCACAAGGTCAACCGGCCTTTCCAGCTGTGCTACGGAGA CCTGATGGGGCCCTTCACGCCTGTGGCCATAGGCGGCTATAAATACGTCA GCAAAATAACCGACGAGTACACAAAGTGGACCGCCGTCTACTTGTTGACT ACTAAGGACCAAGCTCTTCAGTCACTTCAACTGTTCGTC
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Coding sequence (CDS) from alignment at H-elongata_contig147242:802..1590+

>mRNA_H-elongata_contig147242.3203.1 ID=mRNA_H-elongata_contig147242.3203.1|Name=mRNA_H-elongata_contig147242.3203.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig147242:802..1590+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGACAGCGGAGCGTCAGGAAACTACTTTGACGACGCTATCATCCG
TAACCTCAAGCACCGTCTGCAGGACTACGTGCAACTCGCTACGCCCCGCA
AGATTCTCACTGCAGGGGGGGCTCTGCTGAATGGTACGGCGGCTGGCGTG
TTGCAAGGACTTGTCACCAACGACAACGGCGACCAAATTATCGTTCGGAT
CGATATCTTGGTGGTGCCCGGGATTGGGCGCAACCTGTTCTCGGTGATAA
CAGCAACCAAAAAGGGCATTGTCACCATCTTCGACTTCGAAAATCCCAGA
CTGGAGGGATTCAACGTCACCGTGCCGCTACGGAGCGAGAGCGGCAACCT
CTATTCGTTCGTGCTGGACTTGAGTGCGGACGGGTATGGCGCGAAAGAGC
TAGCAATGAACGCAGTCGCCAATGCCCAGGTGTGGCACCGACGGTTGGGT
CATCTCCATGCGCAGAGCCTGGGCATTCTACGCAAGCGATACGGCACTGG
CATCACCTTCGAGGGGGCCGTCTCGGACTGCGACGTTTGCGCCGTGGGGA
AGGCTCAACAGCTGGCTCATACCAAAACGGCCAATCACAAGGTCAACCGG
CCTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCCTTCACGCCTGTGGC
CATAGGCGGCTATAAATACGTCAGCAAAATAACCGACGAGTACACAAAGT
GGACCGCCGTCTACTTGTTGACTACTAAGGACCAAGCTCTTCAGTCACTT
CAACTGTTCGTCATGGTGGACAGCGGAGCGTCAGGAAACTACTTTGACGA
CGCTATCATCCGTAACCTCAAGCACCGTCTGCAGGACTACGTGCAACTCG
CTACGCCCCGCAAGATTCTCACTGCAGGGGGGGCTCTGCTGAATGGTACG
GCGGCTGGCGTGTTGCAAGGACTTGTCACCAACGACAACGGCGACCAAAT
TATCGTTCGGATCGATATCTTGGTGGTGCCCGGGATTGGGCGCAACCTGT
TCTCGGTGATAACAGCAACCAAAAAGGGCATTGTCACCATCTTCGACTTC
GAAAATCCCAGACTGGAGGGATTCAACGTCACCGTGCCGCTACGGAGCGA
GAGCGGCAACCTCTATTCGTTCGTGCTGGACTTGAGTGCGGACGGGTATG
GCGCGAAAGAGCTAGCAATGAACGCAGTCGCCAATGCCCAGGTGTGGCAC
CGACGGTTGGGTCATCTCCATGCGCAGAGCCTGGGCATTCTACGCAAGCG
ATACGGCACTGGCATCACCTTCGAGGGGGCCGTCTCGGACTGCGACGTTT
GCGCCGTGGGGAAGGCTCAACAGCTGGCTCATACCAAAACGGCCAATCAC
AAGGTCAACCGGCCTTTCCAGCTGTGCTACGGAGACCTGATGGGGCCCTT
CACGCCTGTGGCCATAGGCGGCTATAAATACGTCAGCAAAATAACCGACG
AGTACACAAAGTGGACCGCCGTCTACTTGTTGACTACTAAGGACCAAGCT
CTTCAGTCACTTCAACTGTTCGTC
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