mRNA_H-elongata_contig14713.3197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14713.3197.1
Unique NamemRNA_H-elongata_contig14713.3197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14713.3197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14713contigH-elongata_contig14713:4812..5324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.4389496-CDS-H-elongata_contig14713:4811..53241622929873.4389496-CDS-H-elongata_contig14713:4811..5324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14713 4812..5324 +
1691679190.6761158-CDS-H-elongata_contig14713:4811..53241691679190.6761158-CDS-H-elongata_contig14713:4811..5324Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14713 4812..5324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14713.3197.1prot_H-elongata_contig14713.3197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14713 4812..5324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14713.3197.1

>prot_H-elongata_contig14713.3197.1 ID=prot_H-elongata_contig14713.3197.1|Name=mRNA_H-elongata_contig14713.3197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
HEQFGGKRYPPGTRGRGRGRLRGKGKTRGRGGHEQESDDVKGCGRKYSDG
KADSSSVSKKCKHCGNGGHKTVRCPHLSFGVCGGKRHAAEICANVVLAFC
MSSSRFRRESAARNRRRSFVKQEASFPVLRYLIKKDREKGVVWRLIGRWG
IWWLFVIMGLRPICPIHRPV*
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mRNA from alignment at H-elongata_contig14713:4812..5324+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14713.3197.1 ID=mRNA_H-elongata_contig14713.3197.1|Name=mRNA_H-elongata_contig14713.3197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig14713:4812..5324+ (Himanthalia elongata Himel1 dioecious)
CACGAGCAATTCGGCGGGAAGCGATACCCGCCGGGTACTCGTGGACGCGG
GCGTGGCCGATTGCGAGGAAAAGGGAAAACTCGTGGACGTGGAGGTCATG
AGCAGGAAAGTGATGACGTCAAGGGTTGCGGCAGGAAGTACAGCGATGGC
AAGGCGGACTCATCATCTGTGAGCAAGAAGTGTAAGCATTGCGGGAATGG
TGGCCACAAGACGGTCCGATGCCCACATCTCAGCTTCGGCGTTTGTGGTG
GAAAGAGACATGCCGCTGAGATTTGTGCGAACGTCGTATTGGCCTTTTGC
ATGTCAAGCTCCCGATTTCGACGAGAGTCAGCGGCGAGGAACAGGAGGCG
TTCGTTTGTGAAGCAGGAGGCAAGTTTTCCGGTGCTCCGGTACCTGATAA
AAAAGGACCGGGAAAAGGGGGTTGTATGGCGCTTGATTGGCAGGTGGGGG
ATCTGGTGGTTATTTGTGATAATGGGGCTTCGTCCCATATGTCCTATTCA
TCGACCGGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig14713:4812..5324+

>mRNA_H-elongata_contig14713.3197.1 ID=mRNA_H-elongata_contig14713.3197.1|Name=mRNA_H-elongata_contig14713.3197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig14713:4812..5324+ (Himanthalia elongata Himel1 dioecious)
CACGAGCAATTCGGCGGGAAGCGATACCCGCCGGGTACTCGTGGACGCGG
GCGTGGCCGATTGCGAGGAAAAGGGAAAACTCGTGGACGTGGAGGTCATG
AGCAGGAAAGTGATGACGTCAAGGGTTGCGGCAGGAAGTACAGCGATGGC
AAGGCGGACTCATCATCTGTGAGCAAGAAGTGTAAGCATTGCGGGAATGG
TGGCCACAAGACGGTCCGATGCCCACATCTCAGCTTCGGCGTTTGTGGTG
GAAAGAGACATGCCGCTGAGATTTGTGCGAACGTCGTATTGGCCTTTTGC
ATGTCAAGCTCCCGATTTCGACGAGAGTCAGCGGCGAGGAACAGGAGGCG
TTCGTTTGTGAAGCAGGAGGCAAGTTTTCCGGTGCTCCGGTACCTGATAA
AAAAGGACCGGGAAAAGGGGGTTGTATGGCGCTTGATTGGCAGGTGGGGG
ATCTGGTGGTTATTTGTGATAATGGGGCTTCGTCCCATATGTCCTATTCA
TCGACCGGTATGACACGAGCAATTCGGCGGGAAGCGATACCCGCCGGGTA
CTCGTGGACGCGGGCGTGGCCGATTGCGAGGAAAAGGGAAAACTCGTGGA
CGTGGAGGTCATGAGCAGGAAAGTGATGACGTCAAGGGTTGCGGCAGGAA
GTACAGCGATGGCAAGGCGGACTCATCATCTGTGAGCAAGAAGTGTAAGC
ATTGCGGGAATGGTGGCCACAAGACGGTCCGATGCCCACATCTCAGCTTC
GGCGTTTGTGGTGGAAAGAGACATGCCGCTGAGATTTGTGCGAACGTCGT
ATTGGCCTTTTGCATGTCAAGCTCCCGATTTCGACGAGAGTCAGCGGCGA
GGAACAGGAGGCGTTCGTTTGTGAAGCAGGAGGCAAGTTTTCCGGTGCTC
CGGTACCTGATAAAAAAGGACCGGGAAAAGGGGGTTGTATGGCGCTTGAT
TGGCAGGTGGGGGATCTGGTGGTTATTTGTGATAATGGGGCTTCGTCCCA
TATGTCCTATTCATCGACCGGTATGA
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