mRNA_H-elongata_contig147121.3196.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147121.3196.1
Unique NamemRNA_H-elongata_contig147121.3196.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147121.3196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147121contigH-elongata_contig147121:61..573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size513
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.4078066-CDS-H-elongata_contig147121:60..5731622929873.4078066-CDS-H-elongata_contig147121:60..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147121 61..573 -
1691679190.6628773-CDS-H-elongata_contig147121:60..5731691679190.6628773-CDS-H-elongata_contig147121:60..573Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147121 61..573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147121.3196.1prot_H-elongata_contig147121.3196.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147121 61..573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147121.3196.1

>prot_H-elongata_contig147121.3196.1 ID=prot_H-elongata_contig147121.3196.1|Name=mRNA_H-elongata_contig147121.3196.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=171bp
VDIPVADVEKPLHQLREEGFSAKNIVTHLTAWNTLAGTIKAKDDQDILQR
MTSPAAAWRELVRKYSSTTIGTKVQHVMEILDTRVNPSANPVLALEKLKG
KVCALRAAGLDMPEELVCVLFLLALPREYAAFKKEIQREQTITIDQLDAK
LRVEHDSQKQDILDRHDKSSN
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mRNA from alignment at H-elongata_contig147121:61..573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147121.3196.1 ID=mRNA_H-elongata_contig147121.3196.1|Name=mRNA_H-elongata_contig147121.3196.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig147121:61..573- (Himanthalia elongata Himel1 dioecious)
GTCGACATCCCCGTGGCCGACGTGGAGAAGCCGTTGCATCAGCTCCGGGA
AGAAGGCTTTAGCGCCAAGAATATCGTCACCCATCTCACGGCTTGGAATA
CCCTCGCCGGAACCATCAAGGCCAAGGACGACCAGGACATTCTGCAGCGT
ATGACCTCGCCCGCTGCAGCGTGGCGCGAGCTGGTGCGAAAATACAGTTC
GACCACAATTGGCACTAAGGTGCAACACGTGATGGAGATCTTGGATACTC
GCGTGAATCCAAGTGCGAACCCCGTGCTCGCCCTCGAGAAGCTGAAGGGA
AAAGTCTGTGCTCTGCGAGCCGCCGGGCTTGACATGCCCGAGGAGCTTGT
CTGCGTCCTTTTCCTCCTCGCCCTGCCTCGAGAGTACGCTGCCTTCAAGA
AGGAGATCCAGAGAGAGCAGACGATCACCATTGACCAGCTGGACGCCAAG
CTTCGTGTTGAACACGACTCACAGAAGCAGGATATTTTGGACAGGCACGA
CAAATCCAGTAAC
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Coding sequence (CDS) from alignment at H-elongata_contig147121:61..573-

>mRNA_H-elongata_contig147121.3196.1 ID=mRNA_H-elongata_contig147121.3196.1|Name=mRNA_H-elongata_contig147121.3196.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1026bp|location=Sequence derived from alignment at H-elongata_contig147121:61..573- (Himanthalia elongata Himel1 dioecious)
GTCGACATCCCCGTGGCCGACGTGGAGAAGCCGTTGCATCAGCTCCGGGA
AGAAGGCTTTAGCGCCAAGAATATCGTCACCCATCTCACGGCTTGGAATA
CCCTCGCCGGAACCATCAAGGCCAAGGACGACCAGGACATTCTGCAGCGT
ATGACCTCGCCCGCTGCAGCGTGGCGCGAGCTGGTGCGAAAATACAGTTC
GACCACAATTGGCACTAAGGTGCAACACGTGATGGAGATCTTGGATACTC
GCGTGAATCCAAGTGCGAACCCCGTGCTCGCCCTCGAGAAGCTGAAGGGA
AAAGTCTGTGCTCTGCGAGCCGCCGGGCTTGACATGCCCGAGGAGCTTGT
CTGCGTCCTTTTCCTCCTCGCCCTGCCTCGAGAGTACGCTGCCTTCAAGA
AGGAGATCCAGAGAGAGCAGACGATCACCATTGACCAGCTGGACGCCAAG
CTTCGTGTTGAACACGACTCACAGAAGCAGGATATTTTGGACAGGCACGA
CAAATCCAGTAACGTCGACATCCCCGTGGCCGACGTGGAGAAGCCGTTGC
ATCAGCTCCGGGAAGAAGGCTTTAGCGCCAAGAATATCGTCACCCATCTC
ACGGCTTGGAATACCCTCGCCGGAACCATCAAGGCCAAGGACGACCAGGA
CATTCTGCAGCGTATGACCTCGCCCGCTGCAGCGTGGCGCGAGCTGGTGC
GAAAATACAGTTCGACCACAATTGGCACTAAGGTGCAACACGTGATGGAG
ATCTTGGATACTCGCGTGAATCCAAGTGCGAACCCCGTGCTCGCCCTCGA
GAAGCTGAAGGGAAAAGTCTGTGCTCTGCGAGCCGCCGGGCTTGACATGC
CCGAGGAGCTTGTCTGCGTCCTTTTCCTCCTCGCCCTGCCTCGAGAGTAC
GCTGCCTTCAAGAAGGAGATCCAGAGAGAGCAGACGATCACCATTGACCA
GCTGGACGCCAAGCTTCGTGTTGAACACGACTCACAGAAGCAGGATATTT
TGGACAGGCACGACAAATCCAGTAAC
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