mRNA_H-elongata_contig147104.3195.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: D7G7C9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7C9_ECTSI) HSP 1 Score: 197 bits (501), Expect = 6.220e-61 Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
Query: 1 VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLRETVDNLIDG 321
VCDGILDRFE+AAVPLAA+YGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVS+AVPGFEELVLPLV QVL++ GGQ TL STL MLRETVDNL+DG
Sbjct: 15 VCDGILDRFEQAAVPLAAQYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSEAVPGFEELVLPLVMQVLKEGGGQSTLFSTLEMLRETVDNLVDG 121
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A6H5KE48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE48_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.050e-59 Identity = 96/107 (89.72%), Postives = 102/107 (95.33%), Query Frame = 1
Query: 1 VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLRETVDNLIDG 321
VCDGILDRFE+AAVPLAA+YGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVS+AVPGFEELVLPLV QVL++ GGQ TL STL MLRETVDNL+DG
Sbjct: 119 VCDGILDRFEQAAVPLAAQYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSEAVPGFEELVLPLVMQVLKEGGGQSTLFSTLEMLRETVDNLVDG 225
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A0G4G6R9_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G6R9_VITBC) HSP 1 Score: 134 bits (337), Expect = 2.290e-34 Identity = 62/108 (57.41%), Postives = 81/108 (75.00%), Query Frame = 1
Query: 4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQL--TLLSTLSMLRETVDNLIDG 321
CD ILDRFE+ A+PLA EYGALPVVG+GHSCGALL LLI+CLFP TPRA N LISFNNKP ++A+P FEE+V+P+ +Q++ + + L + LR +VD+ +
Sbjct: 455 CDSILDRFEKIAIPLAREYGALPVVGVGHSCGALLHLLISCLFPGTPRAGNVLISFNNKPAAEAIPFFEEVVVPIASQLMNSRTQSVPGNLRELVRFLRTSVDDFAEA 562
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A4D9DB40_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DB40_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.640e-34 Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1
Query: 1 VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKG 255
VCD +L+RFER A+PLA EYGALPVVGIGHSCGALLQ+LITCLFPDTPR ANALISFNN+ A+P FEELV+PL ++ + G
Sbjct: 269 VCDTVLERFERVAIPLAKEYGALPVVGIGHSCGALLQVLITCLFPDTPRLANALISFNNQMAQKAIPAFEELVVPLSLSLMGEDG 353
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A8J9SXH5_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SXH5_PHATR) HSP 1 Score: 122 bits (305), Expect = 4.250e-33 Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQV 240
CD IL RFE A LA +YGALPVVG+GHSCG++LQLLIT LFPDTPR ANALISFNNKPV++A+P FEE+V P T V
Sbjct: 60 CDTILSRFEMVAATLARQYGALPVVGLGHSCGSVLQLLITSLFPDTPRGANALISFNNKPVTEAIPVFEEVVAPFFTYV 138
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: B7FPC9_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FPC9_PHATC) HSP 1 Score: 122 bits (305), Expect = 2.410e-32 Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQV 240
CD IL RFE A LA +YGALPVVG+GHSCG++LQLLIT LFPDTPR ANALISFNNKPV++A+P FEE+V P T V
Sbjct: 60 CDTILSRFEMVAATLARQYGALPVVGLGHSCGSVLQLLITSLFPDTPRGANALISFNNKPVTEAIPVFEEVVAPFFTYV 138
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A7S0CE30_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CE30_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.110e-31 Identity = 61/97 (62.89%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQLTLLSTLSMLR 294
CD I+D+FER A LA +YGA+PVVG+G SCGALLQLLIT LFPDTPRAAN L+SFNNK VS+AVP FEE+ PL + GG L S L + R
Sbjct: 95 CDSIIDKFERIAPMLARQYGAVPVVGVGQSCGALLQLLITSLFPDTPRAANVLLSFNNKEVSEAVPFFEEVFAPLFVGISEGVGGTAKLESLLDLAR 191
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A1E7FSL7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSL7_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.350e-31 Identity = 63/111 (56.76%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKGGQ--------LTLLSTLSMLRETVDNL 312
CD +L +FE A LA +YGALPVVGIGHSCGALLQ+LI+CLFPDTPRAANAL+SFNNKPVS+AVP FE+ P+ +++ RD + LT + L ++ ET+ L
Sbjct: 164 CDDVLTKFENVAPTLARQYGALPVVGIGHSCGALLQVLISCLFPDTPRAANALLSFNNKPVSEAVPFFEDFFAPIPSEI-RDTYAKWAEPAVAALTEVGLLPVIHETIVTL 273
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A7S1V4F8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V4F8_9STRA) HSP 1 Score: 115 bits (289), Expect = 4.160e-31 Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = 1
Query: 13 ILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQVLRDKG 255
IL FER A LA +YGA+PVVG+GHSCGALL LLIT LFPDTPRAANAL+SFNNKPV +AVP FEE+ PL T + + G
Sbjct: 2 ILASFERIAPMLARQYGAIPVVGVGHSCGALLHLLITSLFPDTPRAANALLSFNNKPVKEAVPFFEEVFAPLFTTLSQTNG 82
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Match: A0A7S4AIW9_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AIW9_9STRA) HSP 1 Score: 121 bits (304), Expect = 2.880e-30 Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1
Query: 4 CDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAANALISFNNKPVSDAVPGFEELVLPLVTQV 240
CDG+L +FE A LA EYGALPVVGIGHSCGALLQ+LI+ LFPDTPR ANAL+SFNNKPVSDAVP FEE P+ + +
Sbjct: 254 CDGVLTKFEAVAPTLAREYGALPVVGIGHSCGALLQVLISSLFPDTPRLANALLSFNNKPVSDAVPFFEEFFAPVFSSL 332 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147104.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig147104.3195.1 >prot_H-elongata_contig147104.3195.1 ID=prot_H-elongata_contig147104.3195.1|Name=mRNA_H-elongata_contig147104.3195.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp VCDGILDRFERAAVPLAAEYGALPVVGIGHSCGALLQLLITCLFPDTPRAback to top mRNA from alignment at H-elongata_contig147104:401..1170- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig147104.3195.1 ID=mRNA_H-elongata_contig147104.3195.1|Name=mRNA_H-elongata_contig147104.3195.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=770bp|location=Sequence derived from alignment at H-elongata_contig147104:401..1170- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig147104:401..1170- >mRNA_H-elongata_contig147104.3195.1 ID=mRNA_H-elongata_contig147104.3195.1|Name=mRNA_H-elongata_contig147104.3195.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig147104:401..1170- (Himanthalia elongata Himel1 dioecious)back to top |