mRNA_H-elongata_contig147101.3194.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147101.3194.1
Unique NamemRNA_H-elongata_contig147101.3194.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: D8LDV8_ECTSI (Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDV8_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.170e-34
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGE +KSGEL DIVAIPTSIRTKEQAESL IPLVTLDTHS
Sbjct:   11 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGELLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTHS 80
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BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S3A262_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A262_9RHOD)

HSP 1 Score: 123 bits (309), Expect = 1.960e-34
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTH 207
            VGYKSVDDYVTSGMVVGLGTGSTA FAVERLGEK+KSGEL DIVAIPTSIRTKEQAE L IPLVTLDTH
Sbjct:   50 VGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSIRTKEQAEGLDIPLVTLDTH 118
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BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S3CSN4_9SPIT (Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Strombidium rassoulzadegani TaxID=1082188 RepID=A0A7S3CSN4_9SPIT)

HSP 1 Score: 122 bits (307), Expect = 3.730e-34
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYKSVDDYVTSGMVVGLGTGSTA FAVERLG+K+ +GEL DIVAIPTS+RTKEQAESLGIPLVTLD+HS
Sbjct:    3 VGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGQKLANGELKDIVAIPTSVRTKEQAESLGIPLVTLDSHS 72
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BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A6T5NRP6_HETAK (Ribose-5-phosphate isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NRP6_HETAK)

HSP 1 Score: 125 bits (315), Expect = 4.170e-34
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYK++DDYVTSGMVVGLGTGSTAAFAVERLGE M SGEL DIVAIPTS+RTKEQAESLGIPLVTLDTHS
Sbjct:   48 VGYKAIDDYVTSGMVVGLGTGSTAAFAVERLGELMASGELKDIVAIPTSVRTKEQAESLGIPLVTLDTHS 117
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BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S0RH26_9CHLO (Ribose-5-phosphate isomerase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RH26_9CHLO)

HSP 1 Score: 125 bits (315), Expect = 6.410e-34
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYKSVDDYV SGMVVGLGTGSTA FAVERLG+K+KSGEL DIVAIPTSIRTKEQAESLGIPLVTLDTHS
Sbjct:   59 VGYKSVDDYVESGMVVGLGTGSTAYFAVERLGQKLKSGELKDIVAIPTSIRTKEQAESLGIPLVTLDTHS 128
[Close]
BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S3A353_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A353_9RHOD)

HSP 1 Score: 123 bits (309), Expect = 6.980e-34
Identity = 64/69 (92.75%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTH 207
            VGYKSVDDYVTSGMVVGLGTGSTA FAVERLGEK+KSGEL DIVAIPTSIRTKEQAE L IPLVTLDTH
Sbjct:   50 VGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSIRTKEQAEGLDIPLVTLDTH 118
[Close]
BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S0JD86_9EUKA (Ribose-5-phosphate isomerase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JD86_9EUKA)

HSP 1 Score: 125 bits (314), Expect = 8.460e-34
Identity = 62/70 (88.57%), Postives = 69/70 (98.57%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYK+VDDYVTSGMVVGLGTGSTAAFAVER+G+K+ SGELSDI+A+PTS+RTKEQAESLGIPLVTLDTHS
Sbjct:   56 VGYKAVDDYVTSGMVVGLGTGSTAAFAVERVGQKLASGELSDILAVPTSVRTKEQAESLGIPLVTLDTHS 125
[Close]
BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: B8BUF2_THAPS (Ribose-5-phosphate isomerase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUF2_THAPS)

HSP 1 Score: 125 bits (313), Expect = 9.120e-34
Identity = 64/70 (91.43%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYKSVDDYV SGMVVGLGTGSTA FAVERLGEK+KSGEL DIVAIPTS+RTKEQAE LGIPLVTLDTHS
Sbjct:   45 VGYKSVDDYVKSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSVRTKEQAEELGIPLVTLDTHS 114
[Close]
BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S1TKQ2_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TKQ2_9RHOD)

HSP 1 Score: 125 bits (313), Expect = 1.090e-33
Identity = 65/69 (94.20%), Postives = 66/69 (95.65%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTH 207
            VGYKSVDDYVTSGMVVGLGTGSTA FAVERLGEK+KSGEL DIVAIPTSIRTKEQAESL IPLVTLDTH
Sbjct:   61 VGYKSVDDYVTSGMVVGLGTGSTAYFAVERLGEKLKSGELKDIVAIPTSIRTKEQAESLDIPLVTLDTH 129
[Close]
BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Match: A0A7S2YN40_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YN40_9STRA)

HSP 1 Score: 123 bits (308), Expect = 3.060e-33
Identity = 63/70 (90.00%), Postives = 66/70 (94.29%), Query Frame = 1 
Query:    1 VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSIRTKEQAESLGIPLVTLDTHS 210
            VGYK+VDDYV SGMVVGLGTGSTA FAVER+GEK+KSGEL DIVAIPTSIRTKEQAE LGIPLVTLDTHS
Sbjct:   47 VGYKAVDDYVKSGMVVGLGTGSTAYFAVERVGEKLKSGELKDIVAIPTSIRTKEQAEELGIPLVTLDTHS 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147101.3194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDV8_ECTSI1.170e-3494.29Ribose-5-phosphate isomerase n=1 Tax=Ectocarpus si... [more]
A0A7S3A262_9RHOD1.960e-3492.75Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A7S3CSN4_9SPIT3.730e-3488.57Ribose-5-phosphate isomerase (Fragment) n=1 Tax=St... [more]
A0A6T5NRP6_HETAK4.170e-3491.43Ribose-5-phosphate isomerase n=1 Tax=Heterosigma a... [more]
A0A7S0RH26_9CHLO6.410e-3492.86Ribose-5-phosphate isomerase n=1 Tax=Pyramimonas o... [more]
A0A7S3A353_9RHOD6.980e-3492.75Ribose-5-phosphate isomerase n=1 Tax=Rhodosorus ma... [more]
A0A7S0JD86_9EUKA8.460e-3488.57Ribose-5-phosphate isomerase n=1 Tax=Calcidiscus l... [more]
B8BUF2_THAPS9.120e-3491.43Ribose-5-phosphate isomerase n=1 Tax=Thalassiosira... [more]
A0A7S1TKQ2_9RHOD1.090e-3394.20Ribose-5-phosphate isomerase n=1 Tax=Erythrolobus ... [more]
A0A7S2YN40_9STRA3.060e-3390.00Ribose-5-phosphate isomerase n=1 Tax=Amphiprora pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147101contigH-elongata_contig147101:1..677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue2.5e-27
Seed eggNOG ortholog2880.D8LDV8
Preferred nameRPI2
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
GOsGO:0000003,GO:0000271,GO:0003006,GO:0003674,GO:0003824,GO:0004751,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005976,GO:0006073,GO:0006139,GO:0006213,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009116,GO:0009119,GO:0009163,GO:0009250,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009791,GO:0009941,GO:0009987,GO:0010033,GO:0010228,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019253,GO:0019438,GO:0019685,GO:0022414,GO:0030243,GO:0030244,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0033692,GO:0034357,GO:0034404,GO:0034637,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042455,GO:0042651,GO:0042742,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046108,GO:0046109,GO:0046131,GO:0046132,GO:0046134,GO:0046483,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051273,GO:0051274,GO:0051704,GO:0051707,GO:0055035,GO:0055086,GO:0061458,GO:0071704,GO:0072527,GO:0072528,GO:0080167,GO:0098542,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.ribose-5-phosphate isomerase activity
EggNOG OGsCOG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.305595-CDS-H-elongata_contig147101:0..821622929873.305595-CDS-H-elongata_contig147101:0..82Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147101 1..82 +
1691679190.6161017-CDS-H-elongata_contig147101:0..821691679190.6161017-CDS-H-elongata_contig147101:0..82Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147101 1..82 +
1622929873.3188257-CDS-H-elongata_contig147101:549..6771622929873.3188257-CDS-H-elongata_contig147101:549..677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147101 550..677 +
1691679190.6303596-CDS-H-elongata_contig147101:549..6771691679190.6303596-CDS-H-elongata_contig147101:549..677Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147101 550..677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147101.3194.1prot_H-elongata_contig147101.3194.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147101 1..677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147101.3194.1

>prot_H-elongata_contig147101.3194.1 ID=prot_H-elongata_contig147101.3194.1|Name=mRNA_H-elongata_contig147101.3194.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
VGYKSVDDYVTSGMVVGLGTGSTAAFAVERLGEKMKSGELSDIVAIPTSI
RTKEQAESLGIPLVTLDTHS
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mRNA from alignment at H-elongata_contig147101:1..677+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147101.3194.1 ID=mRNA_H-elongata_contig147101.3194.1|Name=mRNA_H-elongata_contig147101.3194.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=677bp|location=Sequence derived from alignment at H-elongata_contig147101:1..677+ (Himanthalia elongata Himel1 dioecious)
GTGGGATACAAGTCAGTGGACGACTACGTGACGAGCGGAATGGTGGTCGG
CTTGGGCACGGGGTCCACGGCGGCATTCGCGGGTAAGGCGATGTAAAATG
TGCTCGGAGTTGCGAGATTTGATCGTTAGGTGGAGGTAGTGGTGGCGGCT
ACATCATACGGAAATGTACATGTCGTGCATGATGACTGTCGAGCTCCGTG
AGCGGCAGCCGTTGGCAACACTCCCACCGATGGAGAGGCTGGATTACACC
TCTCACGGTGCTAAGAAGGCGTGGATGTTCGGAGGGCTTGAATGAGTTCA
TTAAAAAGAAAACAAAAACAATACGAGGATGAGATCAGTATATGGAGGCG
TTTGTACAGGGAGTGGGGGGAGGGGGCGTTCAAGGACACACATCCGAGCT
CCTCATCTCAAGCACGTACGCACGCACGCATGTAGATTGTGAGGTCAGCA
CAGAGGCTACTTGAAACCTAAGCGATCGGCAAAAAAAACCCCGGACACAT
AATGCATCACTCTCGTTCGCACAATTCGGTTCAATCCGATTCGGTGCAGT
CGAACGCCTGGGGGAGAAGATGAAGAGCGGGGAGCTCAGTGACATCGTGG
CGATCCCGACGTCCATCCGCACCAAGGAGCAGGCGGAGTCTTTGGGCATT
CCTCTGGTGACCCTCGACACGCACTCA
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Coding sequence (CDS) from alignment at H-elongata_contig147101:1..677+

>mRNA_H-elongata_contig147101.3194.1 ID=mRNA_H-elongata_contig147101.3194.1|Name=mRNA_H-elongata_contig147101.3194.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig147101:1..677+ (Himanthalia elongata Himel1 dioecious)
GTGGGATACAAGTCAGTGGACGACTACGTGACGAGCGGAATGGTGGTCGG
CTTGGGCACGGGGTCCACGGCGGCATTCGCGGGTGGGATACAAGTCAGTG
GACGACTACGTGACGAGCGGAATGGTGGTCGGCTTGGGCACGGGGTCCAC
GGCGGCATTCGCGGTCGAACGCCTGGGGGAGAAGATGAAGAGCGGGGAGC
TCAGTGACATCGTGGCGATCCCGACGTCCATCCGCACCAAGGAGCAGGCG
GAGTCTTTGGGCATTCCTCTGGTGACCCTCGACACGCACTCATCGAACGC
CTGGGGGAGAAGATGAAGAGCGGGGAGCTCAGTGACATCGTGGCGATCCC
GACGTCCATCCGCACCAAGGAGCAGGCGGAGTCTTTGGGCATTCCTCTGG
TGACCCTCGACACGCACTCA
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