mRNA_H-elongata_contig147095.3193.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig147095.3193.1
Unique NamemRNA_H-elongata_contig147095.3193.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig147095.3193.1 vs. uniprot
Match: A0A6H5JMS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMS0_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.350e-17
Identity = 37/48 (77.08%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   40 TNIQTKKGPMACQDVDGVSGEAARAWISGPKVGKHICFDGRYLHAAPA 183
            T +  KKGPMAC+DVD VSGEAA+AW+S P +GKHICFDGRYLHAAPA
Sbjct:  179 TVVLEKKGPMACEDVDEVSGEAAKAWVSRPALGKHICFDGRYLHAAPA 226
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BLAST of mRNA_H-elongata_contig147095.3193.1 vs. uniprot
Match: D7G1D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D6_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.200e-16
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   40 TNIQTKKGPMACQDVDGVSGEAARAWISGPKVGKHICFDGRYLHAAPA 183
            T +  KKGPMAC+D++ VSGEAA+AW+S P +GKHICFDGRYLHAAPA
Sbjct:  179 TVVLEKKGPMACEDMEEVSGEAAKAWVSRPALGKHICFDGRYLHAAPA 226
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BLAST of mRNA_H-elongata_contig147095.3193.1 vs. uniprot
Match: A0A1Z5JMW3_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMW3_FISSO)

HSP 1 Score: 54.7 bits (130), Expect = 3.770e-7
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   40 TNIQTKKGPMACQDVDGVSGEAARAWISGPKVGKHICFDGRYLHAAPA 183
            T +  KK P   +D+D + GE   AW+S P VGKHI FDGR LH APA
Sbjct:  191 TVVFNKKSPPP-KDIDSLGGEIRTAWLSQPSVGKHIAFDGRLLHGAPA 237
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BLAST of mRNA_H-elongata_contig147095.3193.1 vs. uniprot
Match: A0A835ZJA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJA8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.480e-6
Identity = 24/48 (50.00%), Postives = 30/48 (62.50%), Query Frame = 1 
Query:   40 TNIQTKKGPMACQDVDGVSGEAARAWISGPKVGKHICFDGRYLHAAPA 183
            T +  K+ P+ C D   + G   R  +S P VGKH+CFDGRYLH APA
Sbjct:  170 TVVLNKRDPVTCGD--SLEGTITRCCLSRPAVGKHMCFDGRYLHGAPA 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig147095.3193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JMS0_9PHAE1.350e-1777.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1D6_ECTSI1.200e-1672.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5JMW3_FISSO3.770e-754.17Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835ZJA8_9STRA2.480e-650.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig147095contigH-elongata_contig147095:1055..1237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue7.9e-14
Seed eggNOG ortholog2880.D7G1D6
EggNOG OGs2BVEA@1,2S26B@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005640.1
Exons1
Model size183
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929873.258292-CDS-H-elongata_contig147095:1054..12371622929873.258292-CDS-H-elongata_contig147095:1054..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147095 1055..1237 +
1691679190.590892-CDS-H-elongata_contig147095:1054..12371691679190.590892-CDS-H-elongata_contig147095:1054..1237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig147095 1055..1237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig147095.3193.1prot_H-elongata_contig147095.3193.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig147095 1055..1237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig147095.3193.1

>prot_H-elongata_contig147095.3193.1 ID=prot_H-elongata_contig147095.3193.1|Name=mRNA_H-elongata_contig147095.3193.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
LSLYIYIYKYKYITNIQTKKGPMACQDVDGVSGEAARAWISGPKVGKHIC
FDGRYLHAAPA
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mRNA from alignment at H-elongata_contig147095:1055..1237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig147095.3193.1 ID=mRNA_H-elongata_contig147095.3193.1|Name=mRNA_H-elongata_contig147095.3193.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig147095:1055..1237+ (Himanthalia elongata Himel1 dioecious)
CTCTCTCTATATATATATATATATAAATATAAATATATAACAAACATCCA
AACAAAAAAGGGGCCGATGGCTTGCCAAGACGTGGACGGCGTTTCTGGAG
AAGCAGCGAGAGCGTGGATTAGCGGGCCGAAGGTGGGGAAGCATATCTGC
TTCGACGGGAGGTATCTGCATGCAGCGCCGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig147095:1055..1237+

>mRNA_H-elongata_contig147095.3193.1 ID=mRNA_H-elongata_contig147095.3193.1|Name=mRNA_H-elongata_contig147095.3193.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig147095:1055..1237+ (Himanthalia elongata Himel1 dioecious)
CTCTCTCTATATATATATATATATAAATATAAATATATAACAAACATCCA
AACAAAAAAGGGGCCGATGGCTTGCCAAGACGTGGACGGCGTTTCTGGAG
AAGCAGCGAGAGCGTGGATTAGCGGGCCGAAGGTGGGGAAGCATATCTGC
TTCGACGGGAGGTATCTGCATGCAGCGCCGGCCCTCTCTCTATATATATA
TATATATAAATATAAATATATAACAAACATCCAAACAAAAAAGGGGCCGA
TGGCTTGCCAAGACGTGGACGGCGTTTCTGGAGAAGCAGCGAGAGCGTGG
ATTAGCGGGCCGAAGGTGGGGAAGCATATCTGCTTCGACGGGAGGTATCT
GCATGCAGCGCCGGCC
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