mRNA_H-elongata_contig146985.3189.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146985.3189.1
Unique NamemRNA_H-elongata_contig146985.3189.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A6H5JN40_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JN40_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 7.130e-56
Identity = 90/104 (86.54%), Postives = 100/104 (96.15%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDV 312
            +WAGNIAQRFF+RYGQPHYAEE M+DFAEAFSKQLAPK+LE +MNTLAMR RGE+CTDRVVHACL+FVG ATELSHTYKLLKPHLDFLLFQAVFPELCLS++D+
Sbjct:  272 KWAGNIAQRFFTRYGQPHYAEENMTDFAEAFSKQLAPKLLEQVMNTLAMRSRGEYCTDRVVHACLVFVGPATELSHTYKLLKPHLDFLLFQAVFPELCLSKKDI 375
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A835YT27_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT27_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.680e-40
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVEV 318
            +WA  IA R FSRYG PH+A E   +FA AFSK +AP++LE +M+ LA+RPRGE+CTDRVVH C+ +V ++ ELSHTYKLLKPHLDFLLFQ VFP LCL ++D+++
Sbjct:  272 KWACQIASRIFSRYGNPHFAGEEHPEFAAAFSKTMAPRLLEKVMHLLALRPRGEYCTDRVVHCCITYVNSSIELSHTYKLLKPHLDFLLFQVVFPLLCLRDDDLDL 377
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A7R9W2E9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2E9_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.310e-35
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVEV 318
            +W+  I  R FSRYG P YAE+   DFA  FS+ +AP+ L  +  TL +RP G+FCTDRVVH CL FV  A EL+ TYK+LKPH+DFLL++  FP +CL+ +DVE+
Sbjct:   26 KWSVQIMSRLFSRYGIPSYAEDECKDFARHFSQNVAPQFLGPVCETLNLRPSGQFCTDRVVHLCLSFVDLAVELAPTYKMLKPHMDFLLYKVCFPTVCLTPDDVEL 131
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A7S1YGF8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YGF8_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.270e-34
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVE 315
            +W+  I  R FSRYG P YAEE + DFA+ FS+ +A + L+ +  TL +RP G FCTDRVVH CL +V  A EL+ TYK+LKPH+DFLL++  FP +CL+++D++
Sbjct:   76 KWSVQIMSRMFSRYGIPSYAEEEIMDFAKHFSQNVATQFLQPVCETLNLRPTGHFCTDRVVHLCLTYVDLAIELAPTYKMLKPHMDFLLYKVCFPTMCLTQDDID 180
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: K0SB87_THAOC (Importin N-terminal domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SB87_THAOC)

HSP 1 Score: 130 bits (327), Expect = 6.980e-33
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVE 315
            +WA  I  R FSRYG P YAE  + DFA+ FS+ +A   L  +  TL +RP G+FCTDRVVH CL FV  A EL+ TYKLLKPH+DFLL++  FP +CLS +D+E
Sbjct:  307 KWAAQIMTRLFSRYGSPEYAESEVKDFAKYFSQNVASSFLGPVCETLNLRPSGQFCTDRVVHLCLNFVDLAVELAATYKLLKPHMDFLLYKVCFPAMCLSAKDIE 411
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: B8C038_THAPS (Ran binding protein 7 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C038_THAPS)

HSP 1 Score: 129 bits (325), Expect = 1.300e-32
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVE 315
            +WA  I  R FSRYG P YAEE + +FA  FS+ +AP+ L  +  TL++R  G+FCTDRVV+ CL FV  A EL+ TYKLLKPH+DFLL++  FP +CL++ED+E
Sbjct:  313 KWAAQIMTRLFSRYGIPTYAEEEIKEFATYFSQNVAPQFLGPVCETLSLRSNGQFCTDRVVYYCLNFVDLAVELAETYKLLKPHMDFLLYKVCFPAMCLTQEDIE 417
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A7S4RDK4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RDK4_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.420e-32
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVE 315
            +W+  I  R FSRYG P YAE+ + +FA  FS  +AP+ L  +  TL +RP G+FCTDRVVH CL FV  A EL+ TYKLLKPH+DFLL++  FP +CL+ ED+E
Sbjct:  332 KWSVQIMSRLFSRYGIPSYAEDEVKEFARHFSVNVAPQFLGPVCETLNLRPSGQFCTDRVVHLCLTFVDLAVELAPTYKLLKPHMDFLLYKVCFPTMCLTAEDIE 436
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A7S0KY49_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KY49_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.270e-32
Identity = 56/106 (52.83%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVEV 318
            +WA  I  R FSRYG P YAEE + +FA+ FS+ +A + L  +  TL +RP G+FCTDRV+H CL +V  A EL+ TYK+LKPH+DFLL++  FP +CL++ED+E+
Sbjct:  181 KWAVQIMSRLFSRYGIPSYAEEEVQEFAKHFSQNVATQFLAPVCETLNLRPSGQFCTDRVLHLCLTYVDLAVELAPTYKMLKPHMDFLLYKVCFPTICLTQEDIEL 286
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: A0A7S4MVL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MVL2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.090e-32
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVEV 318
            +W+  I  R FSRYG P YAE+   +FA  FS+ +AP+ L  +  TL +RP G+FCTDRVVH CL FV  A EL+ TYK+LKPH+DFLL++  FP +CL+ +DVE+
Sbjct:  325 KWSVQIMSRLFSRYGIPSYAEDECKEFARHFSQHVAPQFLGPVCETLNLRPSGQFCTDRVVHLCLTFVDLAVELAPTYKMLKPHMDFLLYKVCFPTVCLTPDDVEL 430
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BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Match: B7FVE6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVE6_PHATC)

HSP 1 Score: 125 bits (315), Expect = 2.900e-31
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 QWAGNIAQRFFSRYGQPHYAEEGMS-DFAEAFSKQLAPKILETMMNTLAMRPRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLSEEDVE 315
            +W+  I  R FSRYG P YA++  + DFA  FS+ +AP+ L  +  TL +RP G FCTDRV+H CL FV  A EL+ TYKLLKPHLDFLL+Q  FP +CL++ED++
Sbjct:  293 KWSVQIMSRLFSRYGIPSYADDQEAKDFAVFFSQNVAPQFLGPVCETLNLRPSGSFCTDRVIHLCLTFVDLAVELASTYKLLKPHLDFLLYQVCFPTMCLTQEDID 398
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146985.3189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN40_9PHAE7.130e-5686.54Importin N-terminal domain-containing protein n=2 ... [more]
A0A835YT27_9STRA2.680e-4063.21Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A7R9W2E9_9STRA2.310e-3554.72Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1YGF8_9STRA1.270e-3452.38Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
K0SB87_THAOC6.980e-3356.19Importin N-terminal domain-containing protein n=1 ... [more]
B8C038_THAPS1.300e-3255.24Ran binding protein 7 n=1 Tax=Thalassiosira pseudo... [more]
A0A7S4RDK4_9STRA2.420e-3255.24Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0KY49_9STRA3.270e-3252.83Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7S4MVL2_9STRA6.090e-3253.77Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
B7FVE6_PHATC2.900e-3154.72Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146985contigH-elongata_contig146985:400..1417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue1.8e-48
Seed eggNOG ortholog2880.D8LDH6
Preferred nameNMD5
KEGG koko:K20223
KEGG TC1.I.1
KEGG Pathwayko04013,map04013
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0005049,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031047,GO:0031224,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0036094,GO:0040029,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061608,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070922,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0097159,GO:0097367,GO:0140104,GO:0140142,GO:1901265,GO:1901363
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG4581@1,KOG1991@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.9446096-CDS-H-elongata_contig146985:399..5251622929872.9446096-CDS-H-elongata_contig146985:399..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146985 400..525 +
1691679190.424959-CDS-H-elongata_contig146985:399..5251691679190.424959-CDS-H-elongata_contig146985:399..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146985 400..525 +
1622929872.9565077-CDS-H-elongata_contig146985:1207..14171622929872.9565077-CDS-H-elongata_contig146985:1207..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146985 1208..1417 +
1691679190.4343507-CDS-H-elongata_contig146985:1207..14171691679190.4343507-CDS-H-elongata_contig146985:1207..1417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146985 1208..1417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146985.3189.1prot_H-elongata_contig146985.3189.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146985 400..1417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146985.3189.1

>prot_H-elongata_contig146985.3189.1 ID=prot_H-elongata_contig146985.3189.1|Name=mRNA_H-elongata_contig146985.3189.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
QWAGNIAQRFFSRYGQPHYAEEGMSDFAEAFSKQLAPKILETMMNTLAMR
PRGEFCTDRVVHACLMFVGAATELSHTYKLLKPHLDFLLFQAVFPELCLS
EEDVEVMGDMM*
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mRNA from alignment at H-elongata_contig146985:400..1417+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146985.3189.1 ID=mRNA_H-elongata_contig146985.3189.1|Name=mRNA_H-elongata_contig146985.3189.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1018bp|location=Sequence derived from alignment at H-elongata_contig146985:400..1417+ (Himanthalia elongata Himel1 dioecious)
CAGTGGGCTGGTAACATCGCTCAACGATTCTTTTCGAGATACGGACAGCC
CCATTACGCCGAAGAGGGTATGTCCGATTTTGCCGAGGCGTTTTCGAAGC
AGCTGGCTCCCAAGATTCTCGAGACGGTGAGGAGCGGAGAATGCTCGCGG
CGGCGGCCGCGTGTTGTATCAATCCGCTGGTCGCTTCGAACCCGCTCTTG
GAGACGCCTTTTCTTCACCCTTGAACTCCTACCCGCTTTTAGTACCACGG
GTGTGGTTATGACGTCATCACATATAGCAGAGTAAGGATAAACAGGATTT
GGTTGCCTCCTGCTTGTAGTCAACTGAAGAGGGAAAATTAATTTCCCTTG
TCCCCGTTCGCGGCGTAGAATTTGGTGTCGCGACACGTGTTCGACAGTCC
CGTCCCGTGTAGTAGGTCAATCGGAGGCATGCTTTCGTTTGGTTACACAA
AAAAAAGTCTGCTTTTGTCGTATCCGCGAAAAATAACGCTTGTAAATGAA
ACATATTTTATTGAGGGTTTGGGGAAGAGTAATAAGTAATGAAGCATACT
ACTTCTTTCTTTTGAGTCGTAAAAAATCGTAAGAAACCGCCGCTAAGGGT
TAAGCTTAAATAATGTATTGAATGGATTCCAGCACTTTGGAGCGCCTCAA
GAAAAAAAATGGAGAAAAATACTCGCAGGCGGTCAAGCCCCCCGGTAGCG
CCACCGGCAAGTGCTCCCAAAAGAAAAGTATGCCTTGTGTGACGTTCGCA
ACCGATTGACTCGCTTTCGTTTCGCCTGCCCCGTTGCTGCTGCTGCCGCC
ACTTCCAGATGATGAACACGCTTGCCATGCGCCCCAGGGGGGAGTTCTGC
ACAGATAGGGTGGTCCACGCGTGCCTAATGTTCGTAGGCGCTGCAACGGA
GCTCTCCCACACCTACAAGCTTCTGAAGCCGCACCTTGACTTCCTTTTAT
TCCAGGCTGTGTTTCCTGAGCTCTGCTTGTCGGAAGAAGACGTGGAGGTG
ATGGGTGATATGATGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig146985:400..1417+

>mRNA_H-elongata_contig146985.3189.1 ID=mRNA_H-elongata_contig146985.3189.1|Name=mRNA_H-elongata_contig146985.3189.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig146985:400..1417+ (Himanthalia elongata Himel1 dioecious)
CAGTGGGCTGGTAACATCGCTCAACGATTCTTTTCGAGATACGGACAGCC
CCATTACGCCGAAGAGGGTATGTCCGATTTTGCCGAGGCGTTTTCGAAGC
AGCTGGCTCCCAAGATTCTCGAGACGCAGTGGGCTGGTAACATCGCTCAA
CGATTCTTTTCGAGATACGGACAGCCCCATTACGCCGAAGAGGGTATGTC
CGATTTTGCCGAGGCGTTTTCGAAGCAGCTGGCTCCCAAGATTCTCGAGA
CGATGATGAACACGCTTGCCATGCGCCCCAGGGGGGAGTTCTGCACAGAT
AGGGTGGTCCACGCGTGCCTAATGTTCGTAGGCGCTGCAACGGAGCTCTC
CCACACCTACAAGCTTCTGAAGCCGCACCTTGACTTCCTTTTATTCCAGG
CTGTGTTTCCTGAGCTCTGCTTGTCGGAAGAAGACGTGGAGGTGATGGGT
GATATGATGTAAATGATGAACACGCTTGCCATGCGCCCCAGGGGGGAGTT
CTGCACAGATAGGGTGGTCCACGCGTGCCTAATGTTCGTAGGCGCTGCAA
CGGAGCTCTCCCACACCTACAAGCTTCTGAAGCCGCACCTTGACTTCCTT
TTATTCCAGGCTGTGTTTCCTGAGCTCTGCTTGTCGGAAGAAGACGTGGA
GGTGATGGGTGATATGATGTAA
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