mRNA_H-elongata_contig146975.3188.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146975.3188.1
Unique NamemRNA_H-elongata_contig146975.3188.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146975.3188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146975contigH-elongata_contig146975:765..1258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size447
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146975.3188.1prot_H-elongata_contig146975.3188.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146975 938..1236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.8738332-UTR-H-elongata_contig146975:764..9371622929872.8738332-UTR-H-elongata_contig146975:764..937Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146975 765..937 +
1691679190.3876193-UTR-H-elongata_contig146975:764..9371691679190.3876193-UTR-H-elongata_contig146975:764..937Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146975 765..937 +
1622929872.9113488-UTR-H-elongata_contig146975:1236..12581622929872.9113488-UTR-H-elongata_contig146975:1236..1258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146975 1237..1258 +
1691679190.4169033-UTR-H-elongata_contig146975:1236..12581691679190.4169033-UTR-H-elongata_contig146975:1236..1258Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146975 1237..1258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.8864532-CDS-H-elongata_contig146975:937..9601622929872.8864532-CDS-H-elongata_contig146975:937..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146975 938..960 +
1691679190.3960636-CDS-H-elongata_contig146975:937..9601691679190.3960636-CDS-H-elongata_contig146975:937..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146975 938..960 +
1622929872.8988318-CDS-H-elongata_contig146975:1007..12361622929872.8988318-CDS-H-elongata_contig146975:1007..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146975 1008..1236 +
1691679190.409257-CDS-H-elongata_contig146975:1007..12361691679190.409257-CDS-H-elongata_contig146975:1007..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146975 1008..1236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146975.3188.1

>prot_H-elongata_contig146975.3188.1 ID=prot_H-elongata_contig146975.3188.1|Name=mRNA_H-elongata_contig146975.3188.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MWRHVSCKLETGSWSTGCRASCVWMPNVGSSVSVTSPSVPFLRPRAGSVL
SRSVGCKCDNQSKYHDHRGESLQANLFFEALLP*
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mRNA from alignment at H-elongata_contig146975:765..1258+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146975.3188.1 ID=mRNA_H-elongata_contig146975.3188.1|Name=mRNA_H-elongata_contig146975.3188.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=494bp|location=Sequence derived from alignment at H-elongata_contig146975:765..1258+ (Himanthalia elongata Himel1 dioecious)
AGCACTTTAGACAGCGATGCAGCTTTTTTTTGTGCTGACTGTTCTTTTTG
ATTTGCAGCAGTTACTATTATTAGTACTATTAGTACTACTGTAGTGGTAC
CACATCAGTTAGTTAATTGCTTCTGTGTGGGTCTAAGAAGCACTTCAGAC
AACACTTTCTGTAGCCCTTGAACATGTGGAGACATGTTAGTTGTAAGCTG
TAGTCAAGTGCCGTTCTAGGTATTGGGATTCTTCTTTGTTGAGGCTTGAG
ACTGGTTCTTGGTCTACAGGGTGTCGTGCGTCGTGTGTGTGGATGCCCAA
TGTGGGATCTTCCGTGAGTGTGACGTCACCTTCCGTACCTTTTTTGAGAC
CACGAGCGGGATCGGTCTTGAGTAGATCAGTCGGCTGTAAGTGTGACAAC
CAATCGAAATATCACGACCATCGAGGGGAAAGTCTGCAGGCTAATCTCTT
CTTCGAAGCTCTACTACCGTAAGTCAGGTGGAGCGGGACGTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig146975:765..1258+

>mRNA_H-elongata_contig146975.3188.1 ID=mRNA_H-elongata_contig146975.3188.1|Name=mRNA_H-elongata_contig146975.3188.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig146975:765..1258+ (Himanthalia elongata Himel1 dioecious)
ATGTGGAGACATGTTAGTTGTAAATGTGGAGACATGTTAGTTGTAAGCTT
GAGACTGGTTCTTGGTCTACAGGGTGTCGTGCGTCGTGTGTGTGGATGCC
CAATGTGGGATCTTCCGTGAGTGTGACGTCACCTTCCGTACCTTTTTTGA
GACCACGAGCGGGATCGGTCTTGAGTAGATCAGTCGGCTGTAAGTGTGAC
AACCAATCGAAATATCACGACCATCGAGGGGAAAGTCTGCAGGCTAATCT
CTTCTTCGAAGCTCTACTACCGTAAGCTTGAGACTGGTTCTTGGTCTACA
GGGTGTCGTGCGTCGTGTGTGTGGATGCCCAATGTGGGATCTTCCGTGAG
TGTGACGTCACCTTCCGTACCTTTTTTGAGACCACGAGCGGGATCGGTCT
TGAGTAGATCAGTCGGCTGTAAGTGTGACAACCAATCGAAATATCACGAC
CATCGAGGGGAAAGTCTGCAGGCTAATCTCTTCTTCGAAGCTCTACTACC
GTAA
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