mRNA_H-elongata_contig14697.3186.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14697.3186.1
Unique NamemRNA_H-elongata_contig14697.3186.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.690e-22
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 3 
Query:    3 MSYLSFKGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFGVPIDVIDEVVYKKIIPGMGLSLVFGNT 200
            MSYLSF G +WGCM QLFFDNTS LLGVL  +FNM FFGVPI++I+EVVY+KI+PG+G++LVFGNT
Sbjct:    5 MSYLSFGGVEWGCMSQLFFDNTSTLLGVLGAIFNMTFFGVPIEIINEVVYQKILPGLGVTLVFGNT 70
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BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: A0A8J9SX93_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SX93_PHATR)

HSP 1 Score: 59.7 bits (143), Expect = 4.110e-8
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 3 
Query:   21 KGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFGVPIDVIDEVVYKKIIPGMGLSLVFGN 197
             G D G   QLFFDN   LLGVL  + +M  FGV   VI+E V+ KI+PG+G+SL+ GN
Sbjct:    2 NGADMGAWCQLFFDNLGTLLGVLIAVQDMENFGVSRGVINETVFGKIVPGVGISLLVGN 60
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BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Match: A0A448ZC90_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZC90_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.410e-5
Identity = 29/62 (46.77%), Postives = 40/62 (64.52%), Query Frame = 3 
Query:   21 KGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFG---VPIDVIDEVVYKKIIPGMGLSLVFGN 197
             G DWG   QLFFDN   LLG L  +  +++ G   V  DV++++V+ KI PG+GL+LV GN
Sbjct:   44 SGGDWGSFTQLFFDNLGTLLGALYAIQGLSYMGDISVSEDVMNDIVWGKIAPGVGLTLVIGN 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14697.3186.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHI4_ECTSI2.690e-2274.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J9SX93_PHATR4.110e-852.54Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A448ZC90_9STRA1.410e-546.77Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14697contigH-elongata_contig14697:2963..4118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.1e-21
Seed eggNOG ortholog2880.D8LHI4
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size894
Cds size201
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14697.3186.1prot_H-elongata_contig14697.3186.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14697 2965..3427 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.7299192-UTR-H-elongata_contig14697:2962..29641622929872.7299192-UTR-H-elongata_contig14697:2962..2964Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14697 2963..2964 +
1691679190.312138-UTR-H-elongata_contig14697:2962..29641691679190.312138-UTR-H-elongata_contig14697:2962..2964Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14697 2963..2964 +
1622929872.7682698-UTR-H-elongata_contig14697:3427..41181622929872.7682698-UTR-H-elongata_contig14697:3427..4118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14697 3428..4118 +
1691679190.3467138-UTR-H-elongata_contig14697:3427..41181691679190.3467138-UTR-H-elongata_contig14697:3427..4118Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14697 3428..4118 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.7425392-CDS-H-elongata_contig14697:2964..31051622929872.7425392-CDS-H-elongata_contig14697:2964..3105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14697 2965..3105 +
1691679190.3221354-CDS-H-elongata_contig14697:2964..31051691679190.3221354-CDS-H-elongata_contig14697:2964..3105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14697 2965..3105 +
1622929872.7578945-CDS-H-elongata_contig14697:3367..34271622929872.7578945-CDS-H-elongata_contig14697:3367..3427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14697 3368..3427 +
1691679190.3317366-CDS-H-elongata_contig14697:3367..34271691679190.3317366-CDS-H-elongata_contig14697:3367..3427Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14697 3368..3427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14697.3186.1

>prot_H-elongata_contig14697.3186.1 ID=prot_H-elongata_contig14697.3186.1|Name=mRNA_H-elongata_contig14697.3186.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MSYLSFKGQDWGCMVQLFFDNTSILLGVLAVLFNMAFFGVPIDVIDEVVY
KKIIPGMGLSLVFGNT*
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mRNA from alignment at H-elongata_contig14697:2963..4118+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14697.3186.1 ID=mRNA_H-elongata_contig14697.3186.1|Name=mRNA_H-elongata_contig14697.3186.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1156bp|location=Sequence derived from alignment at H-elongata_contig14697:2963..4118+ (Himanthalia elongata Himel1 dioecious)
TGATGAGCTATCTTTCCTTCAAAGGGCAAGACTGGGGCTGTATGGTGCAG
CTATTCTTCGACAATACATCGATTCTACTGGGGGTTCTGGCCGTCCTCTT
CAACATGGCCTTCTTCGGTGTTCCCATCGATGTTATTGATGAGGTATGTG
GTATGTCAGTTCATACTGAAGACATGCCACAGCTTGCACCGTTAACCGAT
CATTGCAACGACGAACCAAAAAGAAACACCTATGTCACCAAGCTCGGGCC
ATCTAGTATTGTGACTGGTAGCCCCCCTTTGCTGTCTCCAGTTACCCTAT
TATCTTAGCCTGGGGCTATATTGCCTTCACACAAAATCAACTTGCGATCT
GCTGCTCCGCACCACGCTTTCCCCTTGTCATGTATTCACGGTTGCGCGGA
CGCAGGTCGTGTACAAGAAAATCATCCCTGGCATGGGCTTGAGTCTAGTT
TTCGGCAACACGTGAGCTACGAGTTCCGTATTAATACTAGTATTAATCAT
TCAGGTGTCTCCGTGTGTATAGTGCTGATATATGTTCCTCTGTAGCAACC
CTGTTATTCTATTCTTTGTTTGCATTATGTTCTATTCTATGGCATATTTG
TTCCACTCTTTCAAGGTTGTGCATAGGATGGGTGGGGTAATTTCGTACTC
GTGTTCGGCGTTCATGCATCCGGAGATTAGCGCGCAGTCGACTGTGAGAC
GTTAGCTACGTAGGTTGGTACGGATCCTGTTGCCATAGGGCGATATATAT
CATTTGGAGAACGGGGCGATGTAAAAAAGCCGGGGAGGCGAGCGGAACAA
GCTTCTTAGCGGATAGATGGCTTTCGAGTGGAATTCGCGACTCTAAATTT
CACTAAGTTTCGTGTCATCCTTTGTGATTGCCACTGTGAACTGTTGGTCT
GTTAGATCTTCGATCAGGCGAAAGCAAAGTTGATCATTCTGTACGATGAC
ACAGGTTGATCTCGTTTATATTTCGCTTGCTCAAATAGCGCGGAAGTCAT
GGGGTTTTAATCCCGATCAGGAATATAATATAGCATGAAAACTTCAAAAC
AGGAAGAAGCAAAGCTAAGCCAGAAATTGACAAGATGTAGCTCGTTGTAG
TTAGGCGCGAGCGATGAACTTTCAAGGCAAAGAATAGCTGAAGACGTGAT
CCAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig14697:2963..4118+

>mRNA_H-elongata_contig14697.3186.1 ID=mRNA_H-elongata_contig14697.3186.1|Name=mRNA_H-elongata_contig14697.3186.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig14697:2963..4118+ (Himanthalia elongata Himel1 dioecious)
ATGAGCTATCTTTCCTTCAAAGGGCAAGACTGGGGCTGTATGGTGCAGCT
ATTCTTCGACAATACATCGATTCTACTGGGGGTTCTGGCCGTCCTCTTCA
ACATGGCCTTCTTCGGTGTTCCCATCGATGTTATTGATGAGATGAGCTAT
CTTTCCTTCAAAGGGCAAGACTGGGGCTGTATGGTGCAGCTATTCTTCGA
CAATACATCGATTCTACTGGGGGTTCTGGCCGTCCTCTTCAACATGGCCT
TCTTCGGTGTTCCCATCGATGTTATTGATGAGGTCGTGTACAAGAAAATC
ATCCCTGGCATGGGCTTGAGTCTAGTTTTCGGCAACACGTGAGTCGTGTA
CAAGAAAATCATCCCTGGCATGGGCTTGAGTCTAGTTTTCGGCAACACGT
GA
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