mRNA_H-elongata_contig14694.3185.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14694.3185.1
Unique NamemRNA_H-elongata_contig14694.3185.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: D7FWT3_ECTSI (Sulfotransferase, C-terminal Sulfotransferase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT3_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.860e-19
Identity = 46/92 (50.00%), Postives = 59/92 (64.13%), Query Frame = 3 
Query:  147 DDSRPIGIIIMAQGRSGSTLLGETFRQHQDVLYFYEPCRGWGKGLFGSSSEFHRELHGEACSDLAHRLVTCEFTLHDAARLGIDPAALGSGS 422
            + S P GI+I+AQGRSGST+LGE FR ++D+LYFYEPCR  G+G+ G   E    + G  C  L  RL+ CEFTL D   +  D AA  + S
Sbjct:   64 EPSSPEGILILAQGRSGSTMLGELFRHNEDLLYFYEPCRQRGQGVLGGLHETS-SVGGPECFALIRRLLRCEFTLQDTDGISADRAAAEASS 154
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: A0A7L4XQX3_SACJA (Carbohydrate sulfotranserase n=2 Tax=Saccharina japonica TaxID=88149 RepID=A0A7L4XQX3_SACJA)

HSP 1 Score: 76.6 bits (187), Expect = 1.170e-13
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 3 
Query:  156 RPIGIIIMAQGRSGSTLLGETFRQHQDVLYFYEPCRGWGKGLFGSSSEFHRELHGEACSDLAHRLVTCEFTLHDAARLGIDPAALGSGS 422
            RPIG++IMA GRSGSTL+G+ F+Q++DVLYFYEPCR     L G+      ++ G  C     RL  C F+  D+A +  D  ++ +GS
Sbjct:   40 RPIGVLIMAVGRSGSTLVGQLFQQNKDVLYFYEPCRK----LSGT------DIDGLECLAFLQRLTQCTFSAEDSAWIADDANSVKNGS 118
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: A0A6H5JR69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR69_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.510e-12
Identity = 45/120 (37.50%), Postives = 57/120 (47.50%), Query Frame = 3 
Query:  147 DDSRPIGIIIMAQGRSGSTLLGETFRQ----------------------------HQDVLYFYEPCRGWGKGLFGSSSEFHRELHGEACSDLAHRLVTCEFTLHDAARLGIDPAALGSGS 422
            + S P GI+I+AQGRSGST+LGE FR                             H++ LYFYEPCR  G G+ G   +    + G  C  L  RL+ CEFTL D   +  D AA  + S
Sbjct:   64 EPSSPEGILILAQGRSGSTMLGELFRHNEKCLPVCTHTQTSSQPAAPLTCSHSFLHKNHLYFYEPCRQRGHGVLGGLHQTS-SVGGPECFALVRRLLRCEFTLQDTDGISADRAAAEASS 182
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: D8LIC4_ECTSI (Sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC4_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 6.300e-11
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 3 
Query:  204 LLGETFRQHQDVLYFYEPCRGWGKGLFGSSSEFHRELHGEACSDLAHRLVTCEFTLHDAARLGIDPAALGSGS 422
            ++GE FR+++DV+Y YEPCR  GKG+ G+    ++ L    C  LA RLV CEF ++D+ RLG D  A G  S
Sbjct:    1 MIGELFRENEDVVYVYEPCRASGKGVLGN----YQMLLRTECFALARRLVRCEFDVNDSDRLGTDGFAAGFSS 69
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: A0A8J6DYA3_GALPY (Sulfotransferase n=1 Tax=Galemys pyrenaicus TaxID=202257 RepID=A0A8J6DYA3_GALPY)

HSP 1 Score: 52.4 bits (124), Expect = 3.570e-5
Identity = 27/93 (29.03%), Postives = 47/93 (50.54%), Query Frame = 3 
Query:  105 VMLSHSESSPTTSDDDSRPIGIIIMAQGRSGSTLLGETFRQHQDVLYFYEPC-RGWGKGLFGSSSEFHRELHGEACSDLAHRLVTCEFTLHDA 380
            V+L      P  ++++ +P+ +++++  RSGS+ +G+ F QH DV Y  EP    W      S+S  H      A  DL   +  C+ ++ DA
Sbjct:   22 VLLYRDNVKPLPTEEEPKPVHLLVLSSWRSGSSFVGQLFGQHPDVFYLMEPAWHVWMNFKQSSASTLHM-----AVRDLIRAVFLCDMSVFDA 109
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: A0A2Y9S017_TRIMA (Sulfotransferase n=1 Tax=Trichechus manatus latirostris TaxID=127582 RepID=A0A2Y9S017_TRIMA)

HSP 1 Score: 51.2 bits (121), Expect = 9.000e-5
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = 3 
Query:  141 SDDDSRPIGIIIMAQGRSGSTLLGETFRQHQDVLYFYEPCRGWGKGLFGSSSEFHRELHGEACSDLAHRLVTCEFTLHDA 380
            S++D +P+ ++I++  RSGS+ +G+ F QH DV Y  EP   W   +  + S   R LH  A  DL   +  C+ ++ DA
Sbjct:   36 SEEDPKPVHVLILSSWRSGSSFVGQVFGQHPDVFYLMEPA--WHVWMSFTQSTALR-LH-MAVRDLVRSVFHCDMSVFDA 111
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BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Match: UPI0003F0F102 (carbohydrate sulfotransferase 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0F102)

HSP 1 Score: 51.2 bits (121), Expect = 9.510e-5
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = 3 
Query:   69 QHTGLAGVVPNSVMLSHSESSPTTSDDDSRPIGIIIMAQGRSGSTLLGETFRQHQDVLYFYEPCRG 266
            QH     +  NS++ ++      +       + +++MA  R+GS+ LGE FRQH D LY +EP RG
Sbjct:  123 QHRNQHNISTNSILENNITDIVNSQSQAKARVNVLLMASMRTGSSFLGEMFRQHPDYLYIFEPPRG 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14694.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FWT3_ECTSI6.860e-1950.00Sulfotransferase, C-terminal Sulfotransferase, N-t... [more]
A0A7L4XQX3_SACJA1.170e-1344.94Carbohydrate sulfotranserase n=2 Tax=Saccharina ja... [more]
A0A6H5JR69_9PHAE1.510e-1237.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIC4_ECTSI6.300e-1146.58Sulfotransferase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A8J6DYA3_GALPY3.570e-529.03Sulfotransferase n=1 Tax=Galemys pyrenaicus TaxID=... [more]
A0A2Y9S017_TRIMA9.000e-535.00Sulfotransferase n=1 Tax=Trichechus manatus latiro... [more]
UPI0003F0F1029.510e-534.85carbohydrate sulfotransferase 1-like n=1 Tax=Sacco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14694contigH-elongata_contig14694:2829..6163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size422
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14694.3185.1prot_H-elongata_contig14694.3185.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14694 2829..6143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.633941-CDS-H-elongata_contig14694:2828..29041622929872.633941-CDS-H-elongata_contig14694:2828..2904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 2829..2904 -
1691679190.2755075-CDS-H-elongata_contig14694:2828..29041691679190.2755075-CDS-H-elongata_contig14694:2828..2904Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 2829..2904 -
1622929872.6492598-CDS-H-elongata_contig14694:5111..52241622929872.6492598-CDS-H-elongata_contig14694:5111..5224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 5112..5224 -
1691679190.2834766-CDS-H-elongata_contig14694:5111..52241691679190.2834766-CDS-H-elongata_contig14694:5111..5224Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 5112..5224 -
1622929872.6656976-CDS-H-elongata_contig14694:5930..61431622929872.6656976-CDS-H-elongata_contig14694:5930..6143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 5931..6143 -
1691679190.2915354-CDS-H-elongata_contig14694:5930..61431691679190.2915354-CDS-H-elongata_contig14694:5930..6143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14694 5931..6143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.683855-UTR-H-elongata_contig14694:6143..61631622929872.683855-UTR-H-elongata_contig14694:6143..6163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14694 6144..6163 -
1691679190.3000753-UTR-H-elongata_contig14694:6143..61631691679190.3000753-UTR-H-elongata_contig14694:6143..6163Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14694 6144..6163 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14694.3185.1

>prot_H-elongata_contig14694.3185.1 ID=prot_H-elongata_contig14694.3185.1|Name=mRNA_H-elongata_contig14694.3185.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MTNFAAKALILIGHVAQHTGLAGVVPNSVMLSHSESSPTTSDDDSRPIGI
IIMAQGRSGSTLLGETFRQHQDVLYFYEPCRGWGKGLFGSSSEFHRELHG
EACSDLAHRLVTCEFTLHDAARLGIDPAALGSGS
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mRNA from alignment at H-elongata_contig14694:2829..6163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14694.3185.1 ID=mRNA_H-elongata_contig14694.3185.1|Name=mRNA_H-elongata_contig14694.3185.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3335bp|location=Sequence derived from alignment at H-elongata_contig14694:2829..6163- (Himanthalia elongata Himel1 dioecious)
ATTAATAATACGAAGGCAGCATGACGAACTTCGCAGCAAAAGCTCTGATC
CTTATCGGGCATGTAGCCCAACACACGGGTTTGGCTGGCGTGGTACCAAA
TTCTGTCATGCTGTCCCACTCCGAATCAAGTCCGACGACTTCCGATGACG
ACAGCCGGCCGATCGGGATTATCATAATGGCCCAGGGCCGATCGGGTTCG
ACCTTGCTCGGCGAGACCTTCAGACAACATCAGGTAAGCATAGCAGCTGT
CTCGCGAATAATTTTAGCATGTGGTGTACTAACCGCGAGACACTAGCGAA
TCAGTGAAGGACCGCCGCATTTCTCGGATGACGTACTGCAGCAAATTGTG
AGACAACATCGCCTCACAACCAAAGAGAGCGATGTTTGGTTGTGGTCAAA
ATAATCCCATGGGTAGCCTTTACGATCCCTGAAAGTTACCCCGTGAGCTG
TTTGTCTCGCGTAATAAAATAACACGCCGTTAAGAAATATAAAATGGTTC
TATGTACTACATAAATGGTGGGCCCTGCGCTGTTTGTTCCGTAACCAAGG
CATTTGACAGCACGAACGGGTCGGGTGATGTGTATTTTACCCCCTTGCTT
GGGCTCTCTTCTGCCCTGTGCCGTGCCTACGAGCGAGGCGGTCGAAGAAC
GGGGATTATCCTCTTTTCTTGGAGGGAATCCTCGTGATGTAGAGCGCTCT
TTCCAACAAAGGTATTGGGCGCCCCCTTGCCCTTGGCGATAAATGCCAAA
AGCGTGTTGTAATGACTGAAGCACCAGTTTGTGGCGTATTTCTATGGCTA
GAACCCCCGAAAAATAACTCACCGCCCTCGCGAGTGATCAGTGCGCGAGC
GAAAACGCAGCCAGCCTGCGGATAGCGAGTCCTCCTGCCCCACCTTCCGC
ACCCTAACCCTCCTGTCGCGCTCTGCTCTCGCGTATCAGGATGTCCTGTA
CTTTTATGAACCTTGCCGCGGTTGGGGCAAAGGACTTTTCGGCAGCTCCA
GCGAGTTCCACCGAGAGCTACATGGCGAGGCGTGCTCGGATCTCGCGCAC
AGGTGTAGTTTACACAAAAATATTTTCCGAAGGAAAATGTGCAATAATAA
TAATAATAATAATAATAACCGCGAACTAATTATTTGTAAATATTTGAGTT
TGGATCCCGCCGAACAGCCTCATGATGGTTTGTGTTGAAAACTTAGAAAT
GTATTAGTTGGTCCCCCTAGGCTAAAAGCTGTGCCGACCAAGAAACACAT
ACCAGTATATTTTATACGGCAACGAATCAGGACAAGCTGACCATATCGTC
GTGATCGAGTAGTTAAGGTGCTTACTCACATCCCTTCAGCCTATTATAGT
AATCTGCTAAGTATTTTTTCGTATCGGATTTTTGTGTGGCTCAAGCTCAA
TCTGATTTTTTTGTTTTTTTTAAAGAGGCGAGAAGAAAAAATGTGGACGT
CATATCCCGTAGTTTATTACCGTTCGAAAGTTATGGCCGAATTCCTTTAT
TGTATGTAAGTTTGCTTGGTGCAAAAATATCGCGATGCGCGGCCGAGTTT
TTCTAAATTTGTCTTGAACGTTTGACACGTCATTTGGAGCAAACTCGCCG
AGACACTAAAGAACAACAAAAAAATTGACGAAGTCGTTCTTTGAGTGTTT
TGGACAAGTGTGCTCTAAATTTGATAAACTCAGGTGCGAATCCTGAAATT
GCCGTATTATATGTTACTTGGTAGGCCCAGCCTGTACACCTCTTACGATG
TTAAGAAGGTGTGGATGTTCGGATGGTTGGAATGATTTCATATGGGGTTT
TTTTAAGAAAAATACTGTGTAACCCTTTGATCATTTCCTAAAAGACCCTG
ATCTGACAAATTTGTCAGTCCAAATACGTAAAAAAAAAAATGACCGTGGA
CTGCTGGAGTAACCCCGAGACACCCCCAGCACCAGAACACAAAGACCGCA
GCAGTCAGGCACGTGCAGACCAGTCGGCTGACGTCATGGCACTCTGACCG
CAGGCCAGAATCACACTCTTCGTGAGCTTGAGCTCTCGATGATGTCTTTA
GTTATCCTCGCAGACCTCGATCTCTCGACGATGACGTCAATCATCTTTGA
GACCTCGAGATGATTGAATTGGAGACGGAATAGGACACCACTAAGGTGGT
CTTGTTGCTGGCTGTCGTGTCGGGCACGAGGGTTGACCGTACGGTGCTAA
CGAGGACGATGCGAGGGTTGAAGCCCACAGTTATGGGGCTAGAAGAACCG
AAGGCGTGGACCATCTATATCTATGTTTTGTTGGGCCGATTTGCATAGAT
CGCGCCTGGCGTTGCGTATACCAGAAGAGTGGCGGTTGAACAAAGGGTCT
TGTCTTCCATGAAAAATAAGCTCAGCTAAAGCTTGTTCGGCCAGCGTCCA
AACCCTGTTAACGTGGTTGCTGTGTAAATTGTTGGTGTGAAAAGGCTTAT
TGGGGTTGTGCATTCGTTTTCCTAAAAAACAAAACTGTTAAACCAATGTA
ATATAGATGGACCAGCCGACTGCAGGGGTTAAGAATATTTGGCACATATC
GGTAGGGCGTGTTTTTATTGGGCAACAATTCAGGTGCCATCTGCTTTACA
TTTTTTGGGGTGTCGCAACACCCATGTCAATTTTGTCAGTCTGTTGAGTC
TGGTAAAAAGAAAATTCACAAAAAACTATTAAAAAATCGAGTATTGCTGT
AGTGTGCGAGAAAAAGAAAATCAAGTTCCGTGGCAGTTCCTGCTCGAACG
CACGAAACCGCACGGCCAACCACGAGGAGCCTCGGCTGGAATCCTGCCAC
CCTGCTCTCCGAACTACGTTGCTTGAACTCGTCAACTCGACAAACCTTGA
TGCCTCCATCGTCTTGCTCAATTATATATATATATACAGTATATATATTA
GTGCATACTAGGTATATTATTTTGCCTCACTTTTTGCCGATCAGGCCAAT
AAACGTGCTAGAACTACCAATCCAACCTAATGCAATGTTGCCCATCCCGC
CCGCGGCTGGCCCAGAGGGGATCGACCCATTTCTTTCCGGTTAGTTAACG
CCTCCTCGTTTTTTATCGCGATGCATCAAGTTCAGTAATTCCTTACTTAC
TCCCGCTTTTCTTACGATTCCCGTTACATAACTATAATAAAAGAACCAAT
CCTCGTGCGATTCGAACCCTCGATTTCCGCATCATATATTACTCGGGCGT
CGAACCCAATAGATGTATTTTCGATTGAAGCCGATTACACCCGTGGACAA
ACTTGACAGGCTGGTGACGTGTGAGTTCACGTTGCACGACGCCGCACGTC
TCGGGATTGATCCTGCCGCGCTGGGAAGTGGGTCG
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Coding sequence (CDS) from alignment at H-elongata_contig14694:2829..6163-

>mRNA_H-elongata_contig14694.3185.1 ID=mRNA_H-elongata_contig14694.3185.1|Name=mRNA_H-elongata_contig14694.3185.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig14694:2829..6163- (Himanthalia elongata Himel1 dioecious)
ATGACGAACTTCGCAGCAAAAGCTCTGATCCTTATCGGGCATGTAGCCCA
ACACACGGGTTTGGCTGGCGTGGTACCAAATTCTGTCATGCTGTCCCACT
CCGAATCAAGTCCGACGACTTCCGATGACGACAGCCGGCCGATCGGGATT
ATCATAATGGCCCAGGGCCGATCGGGTTCGACCTTGCTCGGCGAGACCTT
CAGACAACATCAGATGACGAACTTCGCAGCAAAAGCTCTGATCCTTATCG
GGCATGTAGCCCAACACACGGGTTTGGCTGGCGTGGTACCAAATTCTGTC
ATGCTGTCCCACTCCGAATCAAGTCCGACGACTTCCGATGACGACAGCCG
GCCGATCGGGATTATCATAATGGCCCAGGGCCGATCGGGTTCGACCTTGC
TCGGCGAGACCTTCAGACAACATCAGGATGTCCTGTACTTTTATGAACCT
TGCCGCGGTTGGGGCAAAGGACTTTTCGGCAGCTCCAGCGAGTTCCACCG
AGAGCTACATGGCGAGGCGTGCTCGGATCTCGCGCACAGGATGTCCTGTA
CTTTTATGAACCTTGCCGCGGTTGGGGCAAAGGACTTTTCGGCAGCTCCA
GCGAGTTCCACCGAGAGCTACATGGCGAGGCGTGCTCGGATCTCGCGCAC
AGGCTGGTGACGTGTGAGTTCACGTTGCACGACGCCGCACGTCTCGGGAT
TGATCCTGCCGCGCTGGGAAGTGGGTCGGCTGGTGACGTGTGAGTTCACG
TTGCACGACGCCGCACGTCTCGGGATTGATCCTGCCGCGCTGGGAAGTGG
GTCG
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