mRNA_H-elongata_contig14689.3182.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14689.3182.1
Unique NamemRNA_H-elongata_contig14689.3182.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14689.3182.1 vs. uniprot
Match: D7FQK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQK9_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 9.510e-66
Identity = 103/169 (60.95%), Postives = 127/169 (75.15%), Query Frame = 1 
Query:   76 CRRLRDTSELPYLRDSIKCLRIISGSFMVLLIPLFIGVAEDRSPLISPITSYGNGSSWNFGWGRPVVHFTLAFMGLFMDTHPAARTICVVGMFQAILFDTLSSYDLGTQIDCAASGRCALPPGHTLLGLRLLRARDLTSIMLATWALFLVSVLTLIIGYCRIWYTFRQL 582
            C R +   EL  L++ I C R +SG+F++LL PLF   A +  P+I+PITS+GNGSSWN+GWGRPV+HF L F+G+F+DTH AAR  C+VGM QAI+ DTLSSY LGTQIDC  SGRCA+P   TL GLRLL++RDL S+ LATWAL L   L+L+IG CR  Y FRQL
Sbjct:    9 CFRSKARYELSKLQELIVCYRCLSGAFILLLFPLFWVAASEARPVITPITSFGNGSSWNYGWGRPVLHFGLVFVGMFVDTHQAARLSCLVGMMQAIVLDTLSSYALGTQIDCVQSGRCAVPEHTTLSGLRLLQSRDLASVALATWALLLAYYLSLVIGMCRTRYNFRQL 177
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14689.3182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQK9_ECTSI9.510e-6660.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14689contigH-elongata_contig14689:6801..7382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size582
Cds size579
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.4464831-CDS-H-elongata_contig14689:6800..73791622929872.4464831-CDS-H-elongata_contig14689:6800..7379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 6801..7379 -
1691679190.1952906-CDS-H-elongata_contig14689:6800..73791691679190.1952906-CDS-H-elongata_contig14689:6800..7379Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 6801..7379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.461227-UTR-H-elongata_contig14689:7379..73821622929872.461227-UTR-H-elongata_contig14689:7379..7382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14689 7380..7382 -
1691679190.203141-UTR-H-elongata_contig14689:7379..73821691679190.203141-UTR-H-elongata_contig14689:7379..7382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14689 7380..7382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14689.3182.1prot_H-elongata_contig14689.3182.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14689 6801..7379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14689.3182.1

>prot_H-elongata_contig14689.3182.1 ID=prot_H-elongata_contig14689.3182.1|Name=mRNA_H-elongata_contig14689.3182.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=193bp
MTDVGMACVVGFVCFLIISTCDFYCRRLRDTSELPYLRDSIKCLRIISGS
FMVLLIPLFIGVAEDRSPLISPITSYGNGSSWNFGWGRPVVHFTLAFMGL
FMDTHPAARTICVVGMFQAILFDTLSSYDLGTQIDCAASGRCALPPGHTL
LGLRLLRARDLTSIMLATWALFLVSVLTLIIGYCRIWYTFRQL
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mRNA from alignment at H-elongata_contig14689:6801..7382-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14689.3182.1 ID=mRNA_H-elongata_contig14689.3182.1|Name=mRNA_H-elongata_contig14689.3182.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=582bp|location=Sequence derived from alignment at H-elongata_contig14689:6801..7382- (Himanthalia elongata Himel1 dioecious)
CTCATGACCGACGTCGGGATGGCATGCGTGGTCGGGTTCGTATGTTTCCT
CATAATATCCACCTGTGATTTTTACTGCCGGCGCCTGCGAGATACATCAG
AGCTACCGTATCTGCGAGATTCGATCAAGTGCCTGAGGATTATATCCGGA
AGCTTCATGGTCCTACTGATTCCACTATTTATTGGAGTGGCCGAGGATCG
AAGCCCGTTGATCTCGCCCATAACATCGTACGGCAACGGCTCATCATGGA
ATTTCGGCTGGGGTCGACCAGTGGTACACTTCACCCTAGCTTTCATGGGA
TTGTTCATGGACACCCACCCTGCAGCGCGGACCATTTGTGTGGTCGGCAT
GTTTCAAGCAATACTTTTCGACACATTGTCCTCGTATGACCTCGGCACGC
AAATCGATTGCGCCGCGTCAGGGCGGTGCGCGCTTCCGCCCGGTCACACG
CTTCTAGGCCTGCGGCTCCTAAGAGCCAGAGACCTCACCTCGATAATGCT
GGCTACGTGGGCACTTTTTCTCGTGAGTGTTCTTACTCTGATTATAGGTT
ACTGTCGTATTTGGTACACCTTCCGGCAGCTA
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Coding sequence (CDS) from alignment at H-elongata_contig14689:6801..7382-

>mRNA_H-elongata_contig14689.3182.1 ID=mRNA_H-elongata_contig14689.3182.1|Name=mRNA_H-elongata_contig14689.3182.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1158bp|location=Sequence derived from alignment at H-elongata_contig14689:6801..7382- (Himanthalia elongata Himel1 dioecious)
ATGACCGACGTCGGGATGGCATGCGTGGTCGGGTTCGTATGTTTCCTCAT
AATATCCACCTGTGATTTTTACTGCCGGCGCCTGCGAGATACATCAGAGC
TACCGTATCTGCGAGATTCGATCAAGTGCCTGAGGATTATATCCGGAAGC
TTCATGGTCCTACTGATTCCACTATTTATTGGAGTGGCCGAGGATCGAAG
CCCGTTGATCTCGCCCATAACATCGTACGGCAACGGCTCATCATGGAATT
TCGGCTGGGGTCGACCAGTGGTACACTTCACCCTAGCTTTCATGGGATTG
TTCATGGACACCCACCCTGCAGCGCGGACCATTTGTGTGGTCGGCATGTT
TCAAGCAATACTTTTCGACACATTGTCCTCGTATGACCTCGGCACGCAAA
TCGATTGCGCCGCGTCAGGGCGGTGCGCGCTTCCGCCCGGTCACACGCTT
CTAGGCCTGCGGCTCCTAAGAGCCAGAGACCTCACCTCGATAATGCTGGC
TACGTGGGCACTTTTTCTCGTGAGTGTTCTTACTCTGATTATAGGTTACT
GTCGTATTTGGTACACCTTCCGGCAGCTAATGACCGACGTCGGGATGGCA
TGCGTGGTCGGGTTCGTATGTTTCCTCATAATATCCACCTGTGATTTTTA
CTGCCGGCGCCTGCGAGATACATCAGAGCTACCGTATCTGCGAGATTCGA
TCAAGTGCCTGAGGATTATATCCGGAAGCTTCATGGTCCTACTGATTCCA
CTATTTATTGGAGTGGCCGAGGATCGAAGCCCGTTGATCTCGCCCATAAC
ATCGTACGGCAACGGCTCATCATGGAATTTCGGCTGGGGTCGACCAGTGG
TACACTTCACCCTAGCTTTCATGGGATTGTTCATGGACACCCACCCTGCA
GCGCGGACCATTTGTGTGGTCGGCATGTTTCAAGCAATACTTTTCGACAC
ATTGTCCTCGTATGACCTCGGCACGCAAATCGATTGCGCCGCGTCAGGGC
GGTGCGCGCTTCCGCCCGGTCACACGCTTCTAGGCCTGCGGCTCCTAAGA
GCCAGAGACCTCACCTCGATAATGCTGGCTACGTGGGCACTTTTTCTCGT
GAGTGTTCTTACTCTGATTATAGGTTACTGTCGTATTTGGTACACCTTCC
GGCAGCTA
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