mRNA_H-elongata_contig14689.3180.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14689.3180.1
Unique NamemRNA_H-elongata_contig14689.3180.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14689.3180.1 vs. uniprot
Match: D8LKA6_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA6_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 6.090e-42
Identity = 98/168 (58.33%), Postives = 125/168 (74.40%), Query Frame = 1 
Query:    1 KELVRVVNDSRIESGLAGGGXXXXXXXXXXXXXXX----------PKSILTIVAAVPSLGIPSEFKELVVTHAEPLAEIINVDPGVLENRLAVLLRIEGAVDTPQKLEYIVTTLEARAGRS-KGLELSINRMADPQEMVEMAMQQLAAAPPRALGQNLELKFVNEAGE 471
            K +V+VV ++ +++GLA   XXXXXXXXXX               P++ILT +AA   LGIP  F+ELVV  ++ + EI++ DP VLENRL+VLLRIEGAV+TPQKL+YI + LEARAGRS KGLEL +NRMA+P E+VE+ MQQLAAAPPRA+  + ELKFVNE G+
Sbjct:  533 KAIVKVVKENGVDTGLASSXXXXXXXXXXXSGVRRGGRGQSAGRNPRNILTAIAAETELGIPEAFRELVVEQSDAVEEILDADPAVLENRLSVLLRIEGAVETPQKLDYIASALEARAGRSGKGLELCVNRMAEPHEIVEVTMQQLAAAPPRAMAPHPELKFVNEQGQ 700
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BLAST of mRNA_H-elongata_contig14689.3180.1 vs. uniprot
Match: A0A6H5JX10_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX10_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.960e-41
Identity = 95/164 (57.93%), Postives = 121/164 (73.78%), Query Frame = 1 
Query:    1 KELVRVVNDSRIESGLAGGGXXXXXXXXXXXXXXX------PKSILTIVAAVPSLGIPSEFKELVVTHAEPLAEIINVDPGVLENRLAVLLRIEGAVDTPQKLEYIVTTLEARAGRS-KGLELSINRMADPQEMVEMAMQQLAAAPPRALGQNLELKFVNEAGE 471
            K +V+VV D+ +++GLA   XXXXXXXX             P++ILT +AA   LGIP  F+ELVV  ++ + EI++ DP VLENRL+VLLRIEGAV+TPQKLEYI + L+ARAGRS KGLEL INRMA+P ++VE+ MQQLAAAPP A+  + ELKF NE G+
Sbjct:  775 KAIVKVVKDNGVDTGLASSXXXXXXXXXVRRGGRGQSGGRNPRNILTAIAAETELGIPEAFRELVVEQSDAVEEILDADPAVLENRLSVLLRIEGAVETPQKLEYIASALDARAGRSRKGLELCINRMAEPHDIVEVTMQQLAAAPPWAMAPHPELKFANEEGQ 938
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14689.3180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKA6_ECTSI6.090e-4258.33HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JX10_9PHAE3.960e-4157.93HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14689contigH-elongata_contig14689:376..1757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue4e-36
Seed eggNOG ortholog2880.D8LKA6
KEGG koko:K10592
KEGG Pathwayko04120,map04120
GOsGO:0000151,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016032,GO:0016567,GO:0016740,GO:0019058,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0023052,GO:0030163,GO:0030260,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0043161,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046718,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0055085,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ubiquitin protein ligase activity
EggNOG OGsCOG5021@1,KOG0939@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size498
Cds size498
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14689.3180.1prot_H-elongata_contig14689.3180.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14689 376..1757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929872.203258-CDS-H-elongata_contig14689:375..5491622929872.203258-CDS-H-elongata_contig14689:375..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 376..549 +
1691679190.1095068-CDS-H-elongata_contig14689:375..5491691679190.1095068-CDS-H-elongata_contig14689:375..549Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 376..549 +
1622929872.2326-CDS-H-elongata_contig14689:1062..12591622929872.2326-CDS-H-elongata_contig14689:1062..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 1063..1259 +
1691679190.118645-CDS-H-elongata_contig14689:1062..12591691679190.118645-CDS-H-elongata_contig14689:1062..1259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 1063..1259 +
1622929872.2493365-CDS-H-elongata_contig14689:1630..17571622929872.2493365-CDS-H-elongata_contig14689:1630..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 1631..1757 +
1691679190.1287305-CDS-H-elongata_contig14689:1630..17571691679190.1287305-CDS-H-elongata_contig14689:1630..1757Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14689 1631..1757 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14689.3180.1

>prot_H-elongata_contig14689.3180.1 ID=prot_H-elongata_contig14689.3180.1|Name=mRNA_H-elongata_contig14689.3180.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
KELVRVVNDSRIESGLAGGGGGHGGRRGGRGPGRNPKSILTIVAAVPSLG
IPSEFKELVVTHAEPLAEIINVDPGVLENRLAVLLRIEGAVDTPQKLEYI
VTTLEARAGRSKGLELSINRMADPQEMVEMAMQQLAAAPPRALGQNLELK
FVNEAGESPKTRKRV*
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mRNA from alignment at H-elongata_contig14689:376..1757+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14689.3180.1 ID=mRNA_H-elongata_contig14689.3180.1|Name=mRNA_H-elongata_contig14689.3180.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1382bp|location=Sequence derived from alignment at H-elongata_contig14689:376..1757+ (Himanthalia elongata Himel1 dioecious)
AAAGAGCTCGTGCGAGTAGTAAACGACAGCCGGATCGAGTCGGGGTTGGC
GGGAGGGGGCGGCGGACACGGGGGAAGAAGGGGCGGACGAGGCCCTGGGC
GCAACCCCAAGAGCATCTTGACCATCGTCGCTGCCGTACCGTCCCTTGGA
ATACCGTCGGAGTTCAAGGAGCTGGTGGGTGTTTTGGAATGGGGAGGGTT
ACGTAAGAGGGTGGCGTGGGCTGACCGCAATGCTTACTATACCTAGTCTA
GACTAATGGGGGGTTTTACGTAATTTGCGACTACAAGTCTTTTTTTACTA
ATGTAGGTACTGTTGTGTATTGTTTTGTGTGTTGGATGCTTCATTTGTGA
CGTTTTTCACTTCACGGCGTTGTTGATTTTTGTTTTCTCACGGTTTGTGT
GTGTGTGTGTGTGTGTTTGTGTTTTTTTTTTTCGTGTTCGTGTCACAGCT
CAGCATGATCGTCTTAGTTAGGTTCGATATGTTTTTTAATGTATTCGTTT
GATATGTTTGATATTTGCTGCTGACATAATAATCTTAGTTTTGACTTCGT
TCCTCTTACCTTCGAGTGCAATCGCCCGCAATGTTGACGTTGCACGCACT
TTCTCTTCCGTAGCCACCCCCTTTTCCCTTATTTATGTAAACGCCGTTAT
TTATTGCGCCTTATTCCCACCCCTACCCCCGCAAAAGGTTGTGACGCACG
CGGAACCCCTCGCAGAGATCATAAACGTCGACCCTGGGGTGCTTGAAAAT
CGATTGGCGGTGCTTCTAAGGATCGAGGGTGCTGTCGATACCCCTCAAAA
ACTCGAGTATATCGTCACGACCTTGGAGGCCAGAGCTGGGAGATCGAAGG
GGTTGGAGTTGAGCATCAATCGCATGGCCGATCCGTGAGTCCTCTCGCTA
AAGGAAGGGGACGGGGACGGGGTGTCAAACGTGATCTTATCCTCGGATTC
CTTTTGTTTTGTCCCCTGATCCCCTGACCCGACCCATTGGAACTCATGCC
GATGTATATGTCCATGTGCGAGTCTGTGTCTCTGGACCTGTCTTTGGGTG
TTTAAGTGTCTGTATGTAAGTGTGCCTCTGTGTGTGCGAATTTACGCTGT
GAACCCGCCTTGTTGGTTGGTCGCGCCTCTAGCTCGGCACCCCCCCCCCC
ATCTAGAGCTGCGCCAGTCTATGTGACAGTTCGCTATTCTCGGGAGAGAT
GTTTTGTTTGTTTGTTTTTAAGCCCGCCTGACCAAAAAATACTATTTGGA
TGTAGGCAAGAGATGGTGGAGATGGCGATGCAGCAGCTGGCGGCGGCTCC
GCCGAGAGCGCTGGGCCAAAACCTGGAGCTCAAGTTCGTGAACGAGGCAG
GCGAGTCACCAAAAACAAGAAAGAGGGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig14689:376..1757+

>mRNA_H-elongata_contig14689.3180.1 ID=mRNA_H-elongata_contig14689.3180.1|Name=mRNA_H-elongata_contig14689.3180.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig14689:376..1757+ (Himanthalia elongata Himel1 dioecious)
AAAGAGCTCGTGCGAGTAGTAAACGACAGCCGGATCGAGTCGGGGTTGGC
GGGAGGGGGCGGCGGACACGGGGGAAGAAGGGGCGGACGAGGCCCTGGGC
GCAACCCCAAGAGCATCTTGACCATCGTCGCTGCCGTACCGTCCCTTGGA
ATACCGTCGGAGTTCAAGGAGCTGAAAGAGCTCGTGCGAGTAGTAAACGA
CAGCCGGATCGAGTCGGGGTTGGCGGGAGGGGGCGGCGGACACGGGGGAA
GAAGGGGCGGACGAGGCCCTGGGCGCAACCCCAAGAGCATCTTGACCATC
GTCGCTGCCGTACCGTCCCTTGGAATACCGTCGGAGTTCAAGGAGCTGGT
TGTGACGCACGCGGAACCCCTCGCAGAGATCATAAACGTCGACCCTGGGG
TGCTTGAAAATCGATTGGCGGTGCTTCTAAGGATCGAGGGTGCTGTCGAT
ACCCCTCAAAAACTCGAGTATATCGTCACGACCTTGGAGGCCAGAGCTGG
GAGATCGAAGGGGTTGGAGTTGAGCATCAATCGCATGGCCGATCCGTTGT
GACGCACGCGGAACCCCTCGCAGAGATCATAAACGTCGACCCTGGGGTGC
TTGAAAATCGATTGGCGGTGCTTCTAAGGATCGAGGGTGCTGTCGATACC
CCTCAAAAACTCGAGTATATCGTCACGACCTTGGAGGCCAGAGCTGGGAG
ATCGAAGGGGTTGGAGTTGAGCATCAATCGCATGGCCGATCCGCAAGAGA
TGGTGGAGATGGCGATGCAGCAGCTGGCGGCGGCTCCGCCGAGAGCGCTG
GGCCAAAACCTGGAGCTCAAGTTCGTGAACGAGGCAGGCGAGTCACCAAA
AACAAGAAAGAGGGTGTAGGCAAGAGATGGTGGAGATGGCGATGCAGCAG
CTGGCGGCGGCTCCGCCGAGAGCGCTGGGCCAAAACCTGGAGCTCAAGTT
CGTGAACGAGGCAGGCGAGTCACCAAAAACAAGAAAGAGGGTGTAG
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