mRNA_H-elongata_contig14679.3175.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14679.3175.1
Unique NamemRNA_H-elongata_contig14679.3175.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14679.3175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14679contigH-elongata_contig14679:3129..5004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_003410.1
Exons3
Model size855
Cds size855
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14679.3175.1prot_H-elongata_contig14679.3175.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14679 3129..5004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.6468327-CDS-H-elongata_contig14679:3128..32591622929871.6468327-CDS-H-elongata_contig14679:3128..3259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14679 3129..3259 -
1691679189.8889592-CDS-H-elongata_contig14679:3128..32591691679189.8889592-CDS-H-elongata_contig14679:3128..3259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14679 3129..3259 -
1622929871.6597106-CDS-H-elongata_contig14679:3977..43931622929871.6597106-CDS-H-elongata_contig14679:3977..4393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14679 3978..4393 -
1691679189.8963778-CDS-H-elongata_contig14679:3977..43931691679189.8963778-CDS-H-elongata_contig14679:3977..4393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14679 3978..4393 -
1622929871.6714776-CDS-H-elongata_contig14679:4696..50041622929871.6714776-CDS-H-elongata_contig14679:4696..5004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14679 4697..5004 -
1691679189.9049125-CDS-H-elongata_contig14679:4696..50041691679189.9049125-CDS-H-elongata_contig14679:4696..5004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14679 4697..5004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14679.3175.1

>prot_H-elongata_contig14679.3175.1 ID=prot_H-elongata_contig14679.3175.1|Name=mRNA_H-elongata_contig14679.3175.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=285bp
SSVSTSSAAVPSSPAAALTPAALAASAVGGVGEAGAGGVSGAWAAGRGKG
EGNGGLGTGKASVVPPGPGGAFGSGKGFTGFGGPGRFGGTNVASMKPPSK
DAQFPIFPKINLPVPSGTKSSGAGVPFPPPASTSAATPTFSVPAPAGGAS
TLQQQQSPFGSGSGSQLKFGLGPASAASYASGVPTFGSGVPAFGIPASPA
SALASASPSITTTSITSTNVTSSGTRASEGQASTSAAAVGSTAAAAGSAS
TVASKAGGSDVSENAAQAQREDGEMDEEDEGDPV*
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mRNA from alignment at H-elongata_contig14679:3129..5004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14679.3175.1 ID=mRNA_H-elongata_contig14679.3175.1|Name=mRNA_H-elongata_contig14679.3175.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1876bp|location=Sequence derived from alignment at H-elongata_contig14679:3129..5004- (Himanthalia elongata Himel1 dioecious)
TCCAGCGTCTCTACGTCTTCCGCGGCTGTTCCCTCGTCTCCGGCCGCCGC
GCTAACACCTGCTGCCCTGGCAGCTTCTGCCGTAGGAGGAGTGGGCGAAG
CAGGCGCGGGAGGAGTGTCTGGTGCGTGGGCAGCAGGGCGTGGTAAGGGA
GAAGGCAACGGGGGTTTGGGGACCGGGAAGGCGTCTGTTGTGCCGCCAGG
TCCGGGTGGAGCATTCGGCAGCGGCAAGGGCTTCACAGGGTTTGGGGGAC
CGGGTAGGTTTGGAGGCACCAACGTCGCCAGTATGAAACCGCCTTCCAAG
GACGCCCAGTGAGTGTACCTTTTTATTTTGGGGAGCGGAATCGCGTAGTC
ACGCCATTTCTGGCGAATTTTGCGGGTCCGCTCTTTTTTATAGTTTGTAA
AAGTGCTGATTCCATTTTTGGCGAGCGAGTGGTGCGACCGACGGTCAATG
CCAAAACCTTAAGCATTCTTTTTAATCGCCCCAGTGCTATCCGGCGGCCT
GAAATATCCTGCTTTTAAAGGATGCCTCCCTGCCCAGCTCGGCGCTCCCT
CTCAGGTTACCTCTAATCTTATCCACCCCTCTCCTCGACATCGCTGGTCC
GTTTCCCTTAGGTTCCCGATTTTCCCCAAGATCAACCTGCCCGTCCCCTC
CGGTACGAAGAGCAGCGGTGCAGGCGTACCTTTCCCACCCCCCGCTTCCA
CCTCAGCCGCAACACCCACATTCAGCGTCCCCGCCCCTGCTGGCGGAGCG
AGCACCTTGCAACAGCAGCAGTCACCGTTTGGTTCTGGTAGCGGTAGTCA
GCTGAAGTTCGGCTTGGGTCCGGCATCTGCCGCGTCATACGCTTCGGGGG
TCCCGACGTTTGGTTCCGGCGTCCCGGCATTCGGTATACCGGCGTCCCCG
GCTTCTGCCTTAGCTTCCGCCTCTCCCTCGATCACAACCACTTCTATCAC
CTCTACGAATGTCACTTCTTCTGGCACCCGTGCTAGCGAAGGCCAGGCTT
CCACCAGTGCGGCCGCTGTGGGATCTAGTGATGAGACGAACATTAGAGGC
AACGTCGGTGGTGGGAGCTCGGATGCCGTCCCGACGGGTACTGCGGACAG
CGCGGAAGCGGCTGCTGCTGGGATGCCAGGTCCCGGCGCGCTCATGCTAG
ACGTGGAGGCCAGGCGGGCTGCTAGGTGAACTCTTAATATCTGTAATGTG
TGTGGTGTGGTTCGAGTGGTGTGTGCTGTGCGCGTTTCGAGGCATGCCAC
GGGCTGACTGGATACGCCAGGTTGTGCGGGGAGAATTCTGGGCAATGGCG
TGTGAGCGTCGAGGAGTTAAAAATCCAATTAACGCTGCTGCAATGTTTTC
TCTCCTTACCGCCTACGAACTACTTACGTATGTGTATGTGTTTTATGCTG
CATCTTGGCCCCATGGCAGGGAAAAACGCTTCGCCACGCAGCCTCTCGGA
GTAGCCTCTGGCTCCAACCAGGTGCGTCGTACCCGTGAACGTGCTTTTGC
TCCAATCAGCTCGTCGACGCTCCGTATCCCGGCCTCTTCCCTCCTTCCAC
TCACGACCCCAGACTTGAAAGTAGCGAGCACCAAAAAAAGCCAACTTCCC
CACAGATTCTTTCGAGCTCTAGGTCCTGAAAACCCATCGACCTCATATTT
TGCCCTTCCTCTGCCTCGTGTGTGGCGTCTTCTCGCCCTCCATCAGGCCA
CTGTGACTGCGCCTGTCGCCGCCACCAGTTCTCCGGGGACGGCAGCCGCT
GCAGCTGCGGGATCGGCGAGCACGGTAGCCAGCAAGGCAGGGGGAAGCGA
TGTCTCCGAAAACGCCGCTCAGGCCCAACGCGAAGACGGAGAAATGGACG
AGGAAGATGAGGGCGACCCGGTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14679:3129..5004-

>mRNA_H-elongata_contig14679.3175.1 ID=mRNA_H-elongata_contig14679.3175.1|Name=mRNA_H-elongata_contig14679.3175.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at H-elongata_contig14679:3129..5004- (Himanthalia elongata Himel1 dioecious)
TCCAGCGTCTCTACGTCTTCCGCGGCTGTTCCCTCGTCTCCGGCCGCCGC
GCTAACACCTGCTGCCCTGGCAGCTTCTGCCGTAGGAGGAGTGGGCGAAG
CAGGCGCGGGAGGAGTGTCTGGTGCGTGGGCAGCAGGGCGTGGTAAGGGA
GAAGGCAACGGGGGTTTGGGGACCGGGAAGGCGTCTGTTGTGCCGCCAGG
TCCGGGTGGAGCATTCGGCAGCGGCAAGGGCTTCACAGGGTTTGGGGGAC
CGGGTAGGTTTGGAGGCACCAACGTCGCCAGTATGAAACCGCCTTCCAAG
GACGCCCATCCAGCGTCTCTACGTCTTCCGCGGCTGTTCCCTCGTCTCCG
GCCGCCGCGCTAACACCTGCTGCCCTGGCAGCTTCTGCCGTAGGAGGAGT
GGGCGAAGCAGGCGCGGGAGGAGTGTCTGGTGCGTGGGCAGCAGGGCGTG
GTAAGGGAGAAGGCAACGGGGGTTTGGGGACCGGGAAGGCGTCTGTTGTG
CCGCCAGGTCCGGGTGGAGCATTCGGCAGCGGCAAGGGCTTCACAGGGTT
TGGGGGACCGGGTAGGTTTGGAGGCACCAACGTCGCCAGTATGAAACCGC
CTTCCAAGGACGCCCAGTTCCCGATTTTCCCCAAGATCAACCTGCCCGTC
CCCTCCGGTACGAAGAGCAGCGGTGCAGGCGTACCTTTCCCACCCCCCGC
TTCCACCTCAGCCGCAACACCCACATTCAGCGTCCCCGCCCCTGCTGGCG
GAGCGAGCACCTTGCAACAGCAGCAGTCACCGTTTGGTTCTGGTAGCGGT
AGTCAGCTGAAGTTCGGCTTGGGTCCGGCATCTGCCGCGTCATACGCTTC
GGGGGTCCCGACGTTTGGTTCCGGCGTCCCGGCATTCGGTATACCGGCGT
CCCCGGCTTCTGCCTTAGCTTCCGCCTCTCCCTCGATCACAACCACTTCT
ATCACCTCTACGAATGTCACTTCTTCTGGCACCCGTGCTAGCGAAGGCCA
GGCTTCCACCAGTGCGGCCGCTGTGGGATCTAGTTCCCGATTTTCCCCAA
GATCAACCTGCCCGTCCCCTCCGGTACGAAGAGCAGCGGTGCAGGCGTAC
CTTTCCCACCCCCCGCTTCCACCTCAGCCGCAACACCCACATTCAGCGTC
CCCGCCCCTGCTGGCGGAGCGAGCACCTTGCAACAGCAGCAGTCACCGTT
TGGTTCTGGTAGCGGTAGTCAGCTGAAGTTCGGCTTGGGTCCGGCATCTG
CCGCGTCATACGCTTCGGGGGTCCCGACGTTTGGTTCCGGCGTCCCGGCA
TTCGGTATACCGGCGTCCCCGGCTTCTGCCTTAGCTTCCGCCTCTCCCTC
GATCACAACCACTTCTATCACCTCTACGAATGTCACTTCTTCTGGCACCC
GTGCTAGCGAAGGCCAGGCTTCCACCAGTGCGGCCGCTGTGGGATCTACC
GCTGCAGCTGCGGGATCGGCGAGCACGGTAGCCAGCAAGGCAGGGGGAAG
CGATGTCTCCGAAAACGCCGCTCAGGCCCAACGCGAAGACGGAGAAATGG
ACGAGGAAGATGAGGGCGACCCGGTTTAACCGCTGCAGCTGCGGGATCGG
CGAGCACGGTAGCCAGCAAGGCAGGGGGAAGCGATGTCTCCGAAAACGCC
GCTCAGGCCCAACGCGAAGACGGAGAAATGGACGAGGAAGATGAGGGCGA
CCCGGTTTAA
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