mRNA_H-elongata_contig146662.3170.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146662.3170.1
Unique NamemRNA_H-elongata_contig146662.3170.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S3XQV4_HETAK (Glutamate--cysteine ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQV4_HETAK)

HSP 1 Score: 179 bits (454), Expect = 6.600e-54
Identity = 88/113 (77.88%), Postives = 97/113 (85.84%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIF G V EVDD  +TEHFEN+QSTNWQTVRWKPPPPRE  ++P IGWR EFRSME+Q +D ENAAF VFVVLVTRVILAFDLNLY+PLSKVDEN+ RAH R AV GE+
Sbjct:   36 RDPLVIFQGAVAEVDDERSTEHFENVQSTNWQTVRWKPPPPREGPNAPHIGWRVEFRSMEVQLTDFENAAFTVFVVLVTRVILAFDLNLYLPLSKVDENMRRAHARGAVTGER 148
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S4D5D2_HETAK (Glutamate--cysteine ligase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5D2_HETAK)

HSP 1 Score: 179 bits (454), Expect = 4.760e-52
Identity = 88/113 (77.88%), Postives = 97/113 (85.84%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIF G V EVDD  +TEHFEN+QSTNWQTVRWKPPPPRE  ++P IGWR EFRSME+Q +D ENAAF VFVVLVTRVILAFDLNLY+PLSKVDEN+ RAH R AV GE+
Sbjct:  181 RDPLVIFQGAVAEVDDERSTEHFENVQSTNWQTVRWKPPPPREGPNAPHIGWRVEFRSMEVQLTDFENAAFTVFVVLVTRVILAFDLNLYLPLSKVDENMRRAHARGAVTGER 293
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S2SFH2_9STRA (Glutamate--cysteine ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFH2_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.390e-49
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIF+G +EE+DD   T+HFEN+QSTNWQTVRWKPPPPR   ++P IGWRTEFR ME+Q +D ENAAF VF+VLVTRVILAFDLNLYIPLSKVDEN++RAH R+AV  EK
Sbjct:   83 RDPLVIFEGRIEELDDEQDTDHFENLQSTNWQTVRWKPPPPRTDPNAPHIGWRTEFRPMEVQLTDFENAAFAVFIVLVTRVILAFDLNLYIPLSKVDENMERAHRRDAVLNEK 195
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S2YK69_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YK69_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.740e-48
Identity = 82/113 (72.57%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIF+G VEEVDD   TEHFE+IQSTNWQTVRWKPPPPR   + P IGWRTEFRSME+Q +D EN+AF VF++L+TRVILAFDLNLYIP+S+VD N+ RAH RNA    K
Sbjct:   49 RDPLVIFEGAVEEVDDEKQTEHFESIQSTNWQTVRWKPPPPRNDPNDPHIGWRTEFRSMEIQLTDYENSAFTVFIILLTRVILAFDLNLYIPISRVDANMQRAHSRNAAHKGK 161
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S2KFJ0_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KFJ0_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.080e-48
Identity = 77/104 (74.04%), Postives = 88/104 (84.62%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAH 312
            RDPLVIFDG VEEVDD T TEHFE+IQSTNWQ+VRWKPPPPR   + P IGWRTEFRSMEMQ +D ENAAF  F+V++TRVIL FDLN Y+P+S+VD N+ RAH
Sbjct:   15 RDPLVIFDGAVEEVDDETNTEHFESIQSTNWQSVRWKPPPPRHTPNDPHIGWRTEFRSMEMQLTDFENAAFTTFIVVLTRVILTFDLNFYLPISRVDANMQRAH 118
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S2WRG5_9STRA (Glutamate--cysteine ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WRG5_9STRA)

HSP 1 Score: 171 bits (434), Expect = 4.840e-48
Identity = 84/113 (74.34%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIF+G VEEVDD T TEHFE+IQSTNWQTVRWKPPPPR   + P IGWRTEFRSME+Q +D ENAAF +F VL+TRVIL+FDLNLYIPLS+VD N+ RAH R+A R  K
Sbjct:  194 RDPLVIFEGAVEEVDDDTQTEHFESIQSTNWQTVRWKPPPPRNSPNDPHIGWRTEFRSMEIQLTDFENAAFTIFTVLLTRVILSFDLNLYIPLSRVDANMQRAHSRDAARKGK 306
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S2SFD3_9STRA (Glutamate--cysteine ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFD3_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.300e-47
Identity = 85/113 (75.22%), Postives = 98/113 (86.73%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIF+G +EE+DD   T+HFEN+QSTNWQTVRWKPPPPR   ++P IGWRTEFR ME+Q +D ENAAF VF+VLVTRVILAFDLNLYIPLSKVDEN++RAH R+AV  EK
Sbjct:  410 RDPLVIFEGRIEELDDEQDTDHFENLQSTNWQTVRWKPPPPRTDPNAPHIGWRTEFRPMEVQLTDFENAAFAVFIVLVTRVILAFDLNLYIPLSKVDENMERAHRRDAVLNEK 522
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: D8LJD4_ECTSI (Glutamate--cysteine ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.170e-47
Identity = 87/95 (91.58%), Postives = 88/95 (92.63%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSK 285
            RDPLVIFDG VEEVDD T TEHFENIQSTNWQTVRWKPPPPRE EDSP IGWRTEFRSMEMQ +DAENAAF VFVVLVTRVILAFDLNLYIPLSK
Sbjct:  402 RDPLVIFDGAVEEVDDTTATEHFENIQSTNWQTVRWKPPPPRENEDSPRIGWRTEFRSMEMQTTDAENAAFTVFVVLVTRVILAFDLNLYIPLSK 496
[Close]
BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A7S2K593_9STRA (Glutamate--cysteine ligase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K593_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.710e-46
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLVIFDG VEEVDD T TEHFE+IQSTNWQ+VRWKPPPPR   + P IGWRTEFRSMEMQ +D ENAAF  FVVL+TRVIL FDLNLY+PLS+VD N+ RAH RNA +  K
Sbjct:  525 RDPLVIFDGAVEEVDDETNTEHFESIQSTNWQSVRWKPPPPRHTPNDPHIGWRTEFRSMEMQLTDFENAAFTSFVVLLTRVILTFDLNLYLPLSRVDANMQRAHSRNAAKTGK 637
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BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Match: A0A835ZCQ8_9STRA (Glutamate--cysteine ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCQ8_9STRA)

HSP 1 Score: 172 bits (435), Expect = 3.950e-46
Identity = 83/113 (73.45%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:    1 RDPLVIFDGEVEEVDDATTTEHFENIQSTNWQTVRWKPPPPREREDSPLIGWRTEFRSMEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNAVRGEK 339
            RDPLV+F+G + E+DDA   EHFENIQSTNWQTVRWKPPPPR   + P IGWRTEFRS+E+Q +D ENAAFVVF+VLVTRVILAFDLNLY+PLSKVD N+ RAH R+ V  EK
Sbjct:  424 RDPLVVFEGRIAELDDAAEVEHFENIQSTNWQTVRWKPPPPRTSPNDPHIGWRTEFRSLEVQLTDFENAAFVVFIVLVTRVILAFDLNLYMPLSKVDANMRRAHARDGVLREK 536
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146662.3170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XQV4_HETAK6.600e-5477.88Glutamate--cysteine ligase (Fragment) n=1 Tax=Hete... [more]
A0A7S4D5D2_HETAK4.760e-5277.88Glutamate--cysteine ligase (Fragment) n=1 Tax=Hete... [more]
A0A7S2SFH2_9STRA1.390e-4975.22Glutamate--cysteine ligase n=1 Tax=Rhizochromulina... [more]
A0A7S2YK69_9STRA1.740e-4872.57Glutamate--cysteine ligase (Fragment) n=1 Tax=Amph... [more]
A0A7S2KFJ0_9STRA2.080e-4874.04Glutamate--cysteine ligase (Fragment) n=1 Tax=Lept... [more]
A0A7S2WRG5_9STRA4.840e-4874.34Glutamate--cysteine ligase (Fragment) n=1 Tax=Euca... [more]
A0A7S2SFD3_9STRA1.300e-4775.22Glutamate--cysteine ligase n=1 Tax=Rhizochromulina... [more]
D8LJD4_ECTSI3.170e-4791.58Glutamate--cysteine ligase n=1 Tax=Ectocarpus sili... [more]
A0A7S2K593_9STRA2.710e-4675.22Glutamate--cysteine ligase n=1 Tax=Leptocylindrus ... [more]
A0A835ZCQ8_9STRA3.950e-4673.45Glutamate--cysteine ligase n=1 Tax=Tribonema minus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146662contigH-elongata_contig146662:285..1349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.2
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog337075.U4KZU1
Preferred nameGSH1
KEGG rclassRC00064,RC00090
KEGG koko:K11204
KEGG ReactionR00894,R10993
KEGG Pathwayko00270,ko00480,ko01100,ko04212,ko04216,map00270,map00480,map01100,map04212,map04216
KEGG ModuleM00118
GOsGO:0000302,GO:0003674,GO:0003824,GO:0004357,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006518,GO:0006575,GO:0006749,GO:0006750,GO:0006790,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006857,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009636,GO:0009987,GO:0010035,GO:0010038,GO:0015711,GO:0015833,GO:0016874,GO:0016879,GO:0016881,GO:0017109,GO:0019184,GO:0019748,GO:0032991,GO:0034635,GO:0034641,GO:0042221,GO:0042398,GO:0042493,GO:0042542,GO:0042886,GO:0042939,GO:0043043,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0046677,GO:0046686,GO:0046937,GO:0046938,GO:0050896,GO:0051179,GO:0051181,GO:0051186,GO:0051188,GO:0051234,GO:0051716,GO:0061687,GO:0070887,GO:0071241,GO:0071248,GO:0071276,GO:0071585,GO:0071702,GO:0071704,GO:0071705,GO:0072337,GO:0072348,GO:0097237,GO:0097501,GO:0098754,GO:0098849,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902494,GO:1990170,GO:1990748
EggNOG free text desc.glutamate-cysteine ligase
EggNOG OGs38BDB@33154,3NVBR@4751,3QMSC@4890,KOG3754@1,KOG3754@2759
EC6.3.2.2
COG Functional cat.H
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size650
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146662.3170.1prot_H-elongata_contig146662.3170.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146662 874..1086 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.2554657-UTR-H-elongata_contig146662:284..4421622929871.2554657-UTR-H-elongata_contig146662:284..442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146662 285..442 +
1691679189.7631369-UTR-H-elongata_contig146662:284..4421691679189.7631369-UTR-H-elongata_contig146662:284..442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146662 285..442 +
1622929871.2882147-UTR-H-elongata_contig146662:857..8731622929871.2882147-UTR-H-elongata_contig146662:857..873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146662 858..873 +
1691679189.7736385-UTR-H-elongata_contig146662:857..8731691679189.7736385-UTR-H-elongata_contig146662:857..873Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146662 858..873 +
1622929871.3286853-UTR-H-elongata_contig146662:1086..13491622929871.3286853-UTR-H-elongata_contig146662:1086..1349Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146662 1087..1349 +
1691679189.789532-UTR-H-elongata_contig146662:1086..13491691679189.789532-UTR-H-elongata_contig146662:1086..1349Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig146662 1087..1349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.3083994-CDS-H-elongata_contig146662:873..10861622929871.3083994-CDS-H-elongata_contig146662:873..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146662 874..1086 +
1691679189.7814274-CDS-H-elongata_contig146662:873..10861691679189.7814274-CDS-H-elongata_contig146662:873..1086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146662 874..1086 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146662.3170.1

>prot_H-elongata_contig146662.3170.1 ID=prot_H-elongata_contig146662.3170.1|Name=mRNA_H-elongata_contig146662.3170.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MEMQASDAENAAFVVFVVLVTRVILAFDLNLYIPLSKVDENLDRAHVRNA
VRGEKVTRCYPIYHYTAYES*
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mRNA from alignment at H-elongata_contig146662:285..1349+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146662.3170.1 ID=mRNA_H-elongata_contig146662.3170.1|Name=mRNA_H-elongata_contig146662.3170.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1065bp|location=Sequence derived from alignment at H-elongata_contig146662:285..1349+ (Himanthalia elongata Himel1 dioecious)
AGGGATCCTTTGGTGATCTTCGACGGAGAGGTGGAAGAGGTTGACGATGC
TACCACAACGGAGCACTTCGAGAACATCCAGTCTACCAACTGGCAGACAG
TGCGCTGGAAGCCTCCGCCGCCTCGGGAGCGCGAAGACTCGCCGCTCATT
GGCTGGAGGTAAGAAAGTCGTGGGAATCGTGTCTCTTATGCATCGGGGGC
GTCACATTCTTGTTCGCTCCAAGATTTGACGATATGTTCGATGTCGACCG
CGAGGTATCGGTCGATCGGACAGAAATATTTTTTCGAACCTCTACCTTCC
TTCTCTAGCAGCGAGCAGCGAGACTTGAGAAAACAGGGAGATCGATCGCG
AAGTGATTTGGTTCTTGTAGACAAGTGAACGTCTGACTTTTAAAATATTT
ATAGGGAGAGCGATATTATTTACCAGGTATGTATATAGGTCAATACATAG
ATAGGTGTATATATATATTTCTTAATATATTTAGAGCTGTTTCTTTCTTT
CTTTCTTTCTTTCTTTTGATAATTAGAGGCTATTTTTTTTATTAAGTGCA
TATTTTATTTCTATTCTCCTCAGGACGGAGTTCCGGTCCATGGAGATGCA
AGCCTCAGACGCGGAGAACGCCGCCTTCGTGGTGTTCGTGGTGCTGGTGA
CGAGGGTCATCCTCGCATTCGACCTTAACCTCTACATCCCCCTCTCCAAG
GTGGATGAAAACCTTGACAGGGCGCACGTCAGGAACGCTGTACGAGGGGA
AAAGGTGACACGGTGCTACCCTATATATCACTATACAGCCTACGAATCTT
GAACCTTTATTTATCAAACCATAGATGAATGGATGTGTGACTTTGGACTT
GTATAGGGGGTTAATAATACGTTGTGTAAACGATACGCCAAACGATACGT
ATCGTGGTGGTGGTTTATTGATTGTATTGTATTTAAGGGCGAACCCGCCG
TGAAGTTGTCTCATGTCTTCTTCCTGCTTTGTTTAAAATCCTTTTGGAAC
TGGATTTCATTTTTTGTATTGAATTTAGTATATAACAAACAGATCAAGGA
CTTTTTTGTTTGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig146662:285..1349+

>mRNA_H-elongata_contig146662.3170.1 ID=mRNA_H-elongata_contig146662.3170.1|Name=mRNA_H-elongata_contig146662.3170.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig146662:285..1349+ (Himanthalia elongata Himel1 dioecious)
ATGGAGATGCAAGCCTCAGACGCGGAGAACGCCGCCTTCGTGGTGTTCGT
GGTGCTGGTGACGAGGGTCATCCTCGCATTCGACCTTAACCTCTACATCC
CCCTCTCCAAGGTGGATGAAAACCTTGACAGGGCGCACGTCAGGAACGCT
GTACGAGGGGAAAAGGTGACACGGTGCTACCCTATATATCACTATACAGC
CTACGAATCTTGAATGGAGATGCAAGCCTCAGACGCGGAGAACGCCGCCT
TCGTGGTGTTCGTGGTGCTGGTGACGAGGGTCATCCTCGCATTCGACCTT
AACCTCTACATCCCCCTCTCCAAGGTGGATGAAAACCTTGACAGGGCGCA
CGTCAGGAACGCTGTACGAGGGGAAAAGGTGACACGGTGCTACCCTATAT
ATCACTATACAGCCTACGAATCTTGA
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