mRNA_H-elongata_contig146651.3169.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A6H5JBE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE6_9PHAE) HSP 1 Score: 197 bits (500), Expect = 1.340e-55 Identity = 119/249 (47.79%), Postives = 157/249 (63.05%), Query Frame = 1
Query: 25 EEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGA-LMPVLFQGCADGTPS--SIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALR-MVSAATTVDDCLTPAV-GILLRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRERGDGDVGI---GYVPELVRALAGMMAYQ 747
EE+LL S VD GW+IK R+E+FLP F+A+++P V+ LL P ++PPS SFGLC++ID+LEHCG+GGR S+F A L+P L QG P+ S RQACAYGLGVAA+ GG++FDA+SAEA LLL L + +++ ++D V DNAVSAA R ++ V PAV G LL LP+ DV E + CHRRVVD+ + + G GD + VP+LV A+AGMM YQ
Sbjct: 287 EEELLVSVVDATGWMIKGRKETFLPAFEAVMRPLVVQLLD---PAAVAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALARKDPG--DDNDDDDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFG---GGGDGALHAAAVVPKLVTAMAGMMEYQ 527
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI) HSP 1 Score: 198 bits (503), Expect = 2.680e-54 Identity = 122/247 (49.39%), Postives = 155/247 (62.75%), Query Frame = 1
Query: 25 EEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGA-LMPVLFQGCADGTPS--SIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALR-MVSAATTVDDCLTPAV-GILLRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRERGDGDV-GIGYVPELVRALAGMMAYQ 747
EE+LL S VD GW+IK R+E+FLP F+A+++P VL LL P ++PPS SFGLC++ID+LEHCG+GGR S+F A L+P L QG P+ S RQACAYGLGVAA+ GG++FDA+SAEA LLL LV + +D +D V DNAVSAA R ++ V PAV G LL LP+ DV E + CHRRVVD+ + + GDG VP+LV A+AGMM YQ
Sbjct: 809 EEELLVSVVDATGWMIKGRKEAFLPAFEAVMRPLVLQLLD---PAAPAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDFDAHSAEALGLLLALVRKDPGGDNDD--DDGWGEGAVRDNAVSAAFRVLIHRPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFGGG-GDGTFHAAAVVPKLVTAIAGMMEYQ 1049
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI) HSP 1 Score: 172 bits (436), Expect = 2.360e-45 Identity = 120/285 (42.11%), Postives = 146/285 (51.23%), Query Frame = 1
Query: 25 EEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGA-LMPVLFQGCA-DGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGR--RVVEEDMEEDYDVI------------------------SCVTDNAVSAALRMVSAATTVDDCLTPAV------GILLRMLPLRSDVIEARDCHRRVVDI------LCCGNRVLMNRERGDGDVGIGYVPELVRALAGMMAYQPSPE 759
EE++L S D GW+I+ R+ +FLPTF+A+L+P VLPLL A ++P S SF L ++ID+LE G+GGRR++F L+P L QGC D +S RQ CAYGLGVAAD GG EFD +SAEA RLLL LV QGR EED +TDNA+SAA R++ A D AV G LL LP+ DV EA CHRRVVD L G ALAGM+ YQPSPE
Sbjct: 582 EEEMLVSVADATGWMIRGRKAAFLPTFEAVLRPLVLPLLD-STAAAAAALPSSHRSFALSIAIDVLELAGEGGRRAVFPEPLLPALLQGCREDELAASARQVCAYGLGVAADFGGPEFDPHSAEALRLLLALVAQGRGGSTAGPAQEEDXXXXXXXXXXXXXXXXXXXXXXXDRWENGALTDNAISAAFRVLFARPGPVDAAFAAVPMSGFVGSLLDALPIVVDVEEAHVCHRRVVDHALSRHELFFGXXXXXXXXXXXXXXXXXXXXXXXXALAGMVRYQPSPE 865
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A662YDG9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDG9_9STRA) HSP 1 Score: 115 bits (289), Expect = 6.130e-27 Identity = 77/224 (34.38%), Postives = 114/224 (50.89%), Query Frame = 1
Query: 10 EQNAWEEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGALMPVLFQGCADGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALRMVSAATTVDDCLTPAVGILLRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRERGD 681
E + EE + S +D IGWI+K ++ +F P F L PF+ PLL+ V M Q +C+ DI+EHCGD + + + L QG D +PS I QA AYG+GV+A+ G FD + A L+ L+ V D D + DNA+SA ++ + D + L LPLR+DV+EARD H R++ ++ GN ++ E G+
Sbjct: 24 ENDELEEGVFRSMIDSIGWIVKIQKAAFFPIFQTHLLPFIAPLLE----QKTVPMLRGQ---AICMIDDIIEHCGDAAQELV-PLFLNHLVQGLEDPSPSVI-QASAYGIGVSAEKCGAAFDPFCQNALEKLVHLITISANV-------DDDEVGAARDNAISAVAKICLSREGAVDA-AKMWPMWLSWLPLRTDVLEARDVHARLISLVDSGNPHVLGAEYGN 230
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A2P4XRY6_9STRA (Importin-like protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XRY6_9STRA) HSP 1 Score: 113 bits (283), Expect = 7.170e-26 Identity = 77/214 (35.98%), Postives = 109/214 (50.93%), Query Frame = 1
Query: 10 EQNAWEEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGALMPVLFQGCADGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALRMVSAATTVDDCLTPAVGILLRMLPLRSDVIEARDCHRRVVDILCCGN 651
E + EE + S VD IGWI+K ++E+F P F A L FV PLL+ V M Q +C+ DI+EHCG + + + L QG D +PS I QA AYG+GV+A+ G FD + + L+ L+ V D D + DNA+SA ++ A D + L LPLR+DV+EARD H R++ ++ GN
Sbjct: 86 ENDELEEGVFRSMVDSIGWIVKIQKEAFFPVFQAHLLAFVTPLLE----QKTVPMLRGQ---AICMIDDIIEHCG-AAAQELVPLFLNHLVQGLEDQSPSVI-QASAYGIGVSAEKCGAAFDPFCQNSLEKLVHLITVSANV-------DDDEVGAARDNAISAVAKICLAREGAVDA-AKMWPMWLSWLPLRTDVLEARDVHARLISLVSSGN 282
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A5D6XWI5_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWI5_9STRA) HSP 1 Score: 114 bits (284), Expect = 5.150e-25 Identity = 86/247 (34.82%), Postives = 130/247 (52.63%), Query Frame = 1
Query: 25 EEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGALMPV----LFQGCADGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALRMVSAAT-TVDDCLTPAVGILLRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRERGDGDVGIGYVPELVRALAGMMAYQP 750
EE + + VD IGWIIK+++E+F P F L PFV PLL+L AVS+ Q +C+ D++EHCG + L+PV L G D +P+ I QA AYG+GV A+ G F ++ A L+ +V V D D + DNAVSA +++ + +VD AV L LPLR+DV+EARD H R++ ++ GN L+ + + +P ++ A A ++ ++P
Sbjct: 856 EEGVFRAMVDSIGWIIKTQKEAFFPVFKLHLLPFVTPLLELG----AVSVLRGQ---AICMIDDVIEHCGQPAQE-----LVPVFLAHLVAGLEDVSPAVI-QASAYGIGVCAEKCGPAFAPFAPSALEKLVHVVTVAAAV-------DDDEVRAARDNAVSAVAKLLLFSEGSVDAAKLWAVW--LSWLPLRTDVLEARDLHARLIALVDGGNAALLGPDYAN-------LPLILNAFAAILLHEP 1073
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A8K1FGX3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGX3_PYTOL) HSP 1 Score: 111 bits (278), Expect = 3.220e-24 Identity = 76/217 (35.02%), Postives = 118/217 (54.38%), Query Frame = 1
Query: 25 EEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGALMPVLFQGCADGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALR-MVSAATTVDDCLTPAVGILLRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRE 672
EE + +D IGWIIK++RE+F P F L PFVLPLL+L + ++ +C+ DI+EHCG + + + L +G D +P + QA AYG+GV A+ G F ++ E+ L+ LV+ V ED +V++ DNAVSA + ++ A +V+ + + L LPLR+DV+EARD H R + + GN+ ++ E
Sbjct: 855 EEGIFRGMIDSIGWIIKTQREAFFPVFKNQLLPFVLPLLELGIMNVLRGQ-------AICMIDDIIEHCG-AAAQELVPMFITHLVKGLEDASPQ-VLQASAYGVGVCAEKTGAAFLPFAQESLAKLVHLVKASAAV------EDDEVLAA-RDNAVSAVAKILLHAEGSVN--VGEVWPVWLTWLPLRTDVMEARDLHGRFISWVAGGNKHILGAE 1053
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A225WVM2_9STRA (Importin n=4 Tax=Phytophthora TaxID=4783 RepID=A0A225WVM2_9STRA) HSP 1 Score: 111 bits (278), Expect = 3.230e-24 Identity = 75/214 (35.05%), Postives = 109/214 (50.93%), Query Frame = 1
Query: 10 EQNAWEEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGALMPVLFQGCADGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALRMVSAATTVDDCLTPAVGILLRMLPLRSDVIEARDCHRRVVDILCCGN 651
E + EE + S +D IGWI+K ++E+F P F A L FV PLL+ V M Q +C+ DI+EHCG + + + L QG D +PS I QA AYG+GV+A+ G FD + + L+ L+ V + D + DNA+SA ++ A D + L LPLR+DV+EARD H R++ ++ GN
Sbjct: 850 ENDDLEEGVFRSMIDSIGWIVKYQKEAFFPVFQAHLLTFVTPLLE----QKTVPMLRGQ---AICMIDDIIEHCG-AAAQELVPLFLNHLVQGLEDQSPSVI-QASAYGIGVSAEKCGAAFDPFCQNSLEKLVHLINVSANVAD-------DEVGAARDNAISAVAKICLAREGAVDA-AKMWPMWLSWLPLRTDVLEARDVHARLISLVNSGN 1046
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A2D4CE44_PYTIN (Importin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE44_PYTIN) HSP 1 Score: 108 bits (269), Expect = 1.820e-23 Identity = 74/242 (30.58%), Postives = 119/242 (49.17%), Query Frame = 1
Query: 25 EEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGDGGRRSIFGALMPVLFQGCADGTPSSIRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALRMVSAATTVDDCLTPAVGILLRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRERGDGDVGIGYVPELVRALAGMMAYQP 750
EE + S +D IGWIIK++RE+F P F + L PF+ PLL S+ P +C+ DI+EHCG + + + L G D +P I QA AYG+GV A+ G F +S+ A L+ +++ V E + + DNAV A +++ A + + LPL++DVIEARD H R + + GN+ ++ E ++P +++ A ++ + P
Sbjct: 169 EEGVFRSMIDSIGWIIKTQREAFFPVFKSHLMPFLTPLLN------NASVLPVLRGQAICMIDDIIEHCG-AAAQELVPMFISHLINGLEDQSPQVI-QASAYGVGVCAEKTGPTFLTFSSPALDKLVAVIQAAETVDEPEA-------AAARDNAVRAVSKILLHAESAVNAAN-VWPXXXXXLPLKTDVIEARDLHARFISWVAGGNKHILGAE-------FQHLPVVLKVFASILIHDP 387
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Match: A0A024G4G4_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4G4_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 1.030e-19 Identity = 80/245 (32.65%), Postives = 123/245 (50.20%), Query Frame = 1
Query: 13 QNAWEEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPLPHLAVSMPPSQLSFGLCLSIDILEHCGD--GGRRSIFGALMPVLFQGCADGTPSS-IRQACAYGLGVAADHGGEEFDAYSAEAFRLLLGLVEQGRRVVEEDMEEDYDVISCVTDNAVSAALRMVSAATTVDDCLTPAVGIL-LRMLPLRSDVIEARDCHRRVVDILCCGNRVLMNRERGDGDVGIGYVPELVRALAGM 735
Q+ E+ + S +D IGW IK + +F P F + L PFV+ ++L V +P + +C+ DI+EHC G + S F L G D PS+ I QA AYG+GVAA++ + F Y+ E + L+ L+ R + + E+ DN VSA +++ T+ D T A+ L L LPL+ DVIEARD H R++ +L L E + +P +++ALA +
Sbjct: 852 QDEVEDGIFRSMIDAIGWTIKVHKNNFFPVFQSELLPFVMENIKL------VQIPAIRAQI-ICMMDDIIEHCQPLPGQQMSSFAT---HLLSGIQD--PSAVIIQAAAYGIGVAAENANQAFSPYAPECLQKLIQLILALREYLAHNENEET---GAAHDNCVSAVSKLLIYYPTIAD--TKAIWPLWLSWLPLKMDVIEARDVHDRMLHLLGNNFAELYGSEYAN-------LPSILKALAAL 1072 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146651.3169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146651.3169.1 >prot_H-elongata_contig146651.3169.1 ID=prot_H-elongata_contig146651.3169.1|Name=mRNA_H-elongata_contig146651.3169.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp EREEQNAWEEDLLASSVDGIGWIIKSRRESFLPTFDAMLKPFVLPLLQLPback to top mRNA from alignment at H-elongata_contig146651:771..1592- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146651.3169.1 ID=mRNA_H-elongata_contig146651.3169.1|Name=mRNA_H-elongata_contig146651.3169.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=822bp|location=Sequence derived from alignment at H-elongata_contig146651:771..1592- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146651:771..1592- >mRNA_H-elongata_contig146651.3169.1 ID=mRNA_H-elongata_contig146651.3169.1|Name=mRNA_H-elongata_contig146651.3169.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig146651:771..1592- (Himanthalia elongata Himel1 dioecious)back to top |