mRNA_H-elongata_contig146649.3168.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146649.3168.1
Unique NamemRNA_H-elongata_contig146649.3168.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A835YUK2_9STRA (Fructose-bisphosphatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUK2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.240e-25
Identity = 51/55 (92.73%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQE 171
            GKLGVIASEEEDHPVLVEEAF++KYVAVFDPLDGSSNIDAAISTGTIFGI+EE+E
Sbjct:  144 GKLGVIASEEEDHPVLVEEAFSAKYVAVFDPLDGSSNIDAAISTGTIFGIFEEKE 198
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A4D9CTB7_9STRA (Fructose-bisphosphatase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTB7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.820e-25
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQEVLI 180
            GKLGV+ASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGI+ E +  +
Sbjct:  170 GKLGVVASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIFLENDACL 227
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: D8LLS2_ECTSI (Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.250e-25
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 SKGKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQEVLI 180
            S GKLGVIASEEED PVLVEEAFNSK+VAVFDPLDGSSNIDAAISTGTIFGI+EE E  I
Sbjct:  143 SSGKLGVIASEEEDTPVLVEEAFNSKFVAVFDPLDGSSNIDAAISTGTIFGIFEETEECI 202
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A7S2RUE4_9STRA (Fructose-bisphosphatase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUE4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.320e-24
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQ--EVLIT 183
            GKLG +ASEEEDHPVLVEEA+  +YVAVFDPLDGSSNIDAAISTGTIFGI+EE+  E LIT
Sbjct:  104 GKLGTLASEEEDHPVLVEEAYEGRYVAVFDPLDGSSNIDAAISTGTIFGIFEEKGDECLIT 164
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A7S1XRP8_9STRA (Fructose-bisphosphatase n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRP8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.150e-21
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEE 165
            G++GV+ SEEED+PVL+EEA+N KY AVFDPLDGSSNIDAAISTGTIFGI++E
Sbjct:  147 GRVGVVGSEEEDNPVLIEEAYNGKYAAVFDPLDGSSNIDAAISTGTIFGIFQE 199
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A7S2V7Q3_9STRA (Fructose-bisphosphatase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V7Q3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.500e-20
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEE 165
            GKLGVIASEEE+ PVLVEE    KYVAVFDPLDGSSNIDAAISTGTIFGI+EE
Sbjct:  132 GKLGVIASEEEESPVLVEEGLMGKYVAVFDPLDGSSNIDAAISTGTIFGIFEE 184
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A0G4EMN8_VITBC (Fructose-bisphosphatase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMN8_VITBC)

HSP 1 Score: 90.9 bits (224), Expect = 5.050e-20
Identity = 41/55 (74.55%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQE 171
            G+ GV+ASEEE HPVLVEEA+ SK+V VFDPLDGSSN+DA I+TGTIFG+++EQE
Sbjct:  151 GRCGVVASEEEPHPVLVEEAYMSKFVTVFDPLDGSSNVDAGIATGTIFGVFKEQE 205
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A7S2X8M1_9EUKA (Fructose-bisphosphatase n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X8M1_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 1.010e-19
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 SKGKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQEVLI 180
            S GKLGVIASEEED PV+V+E ++ +YVA FDPLDGSSNIDAAISTGTIFGI++  E  I
Sbjct:  180 SSGKLGVIASEEEDDPVIVDELYSGEYVATFDPLDGSSNIDAAISTGTIFGIFKAPEECI 239
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: X2DAQ5_9ALVE (Fructose-bisphosphatase n=1 Tax=Chromera velia TaxID=505693 RepID=X2DAQ5_9ALVE)

HSP 1 Score: 89.7 bits (221), Expect = 1.210e-19
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    7 GKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIY-EEQEVLI 180
            G+ GV+ASEEE+HP LVEEAF SK+V VFDPLDGSSN+DA I+TGTIFG++ EE+E LI
Sbjct:  150 GRCGVVASEEEEHPWLVEEAFQSKFVTVFDPLDGSSNVDAGIATGTIFGVFAEEEECLI 208
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BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Match: A0A392MIU8_9FABA (Fructose-16-bisphosphatase chloroplastic-like n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MIU8_9FABA)

HSP 1 Score: 84.0 bits (206), Expect = 2.040e-19
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 1 
Query:    1 SKGKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIFGIYEEQE 171
            S G+ G+IASEEED PV VEE+++  Y+ VFDPLDGSSNIDAA+STG+IFGIY   +
Sbjct:   49 SSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIYSPND 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146649.3168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUK2_9STRA3.240e-2592.73Fructose-bisphosphatase n=2 Tax=Tribonema minus Ta... [more]
A0A4D9CTB7_9STRA4.820e-2586.21Fructose-bisphosphatase n=1 Tax=Nannochloropsis sa... [more]
D8LLS2_ECTSI9.250e-2588.33Fructose-bisphosphatase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2RUE4_9STRA2.320e-2481.97Fructose-bisphosphatase (Fragment) n=1 Tax=Rhizoch... [more]
A0A7S1XRP8_9STRA9.150e-2179.25Fructose-bisphosphatase n=3 Tax=Phaeomonas parva T... [more]
A0A7S2V7Q3_9STRA1.500e-2086.79Fructose-bisphosphatase n=1 Tax=Fibrocapsa japonic... [more]
A0A0G4EMN8_VITBC5.050e-2074.55Fructose-bisphosphatase n=2 Tax=Vitrella brassicaf... [more]
A0A7S2X8M1_9EUKA1.010e-1973.33Fructose-bisphosphatase n=1 Tax=Lotharella oceanic... [more]
X2DAQ5_9ALVE1.210e-1972.88Fructose-bisphosphatase n=1 Tax=Chromera velia Tax... [more]
A0A392MIU8_9FABA2.040e-1966.67Fructose-16-bisphosphatase chloroplastic-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146649contigH-elongata_contig146649:32..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D8LLS2
Preferred nameFBP
KEGG rclassRC00017
KEGG koko:K03841
KEGG ReactionR00762,R04780
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko04152,ko04910,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map04152,map04910
KEGG ModuleM00003,M00165,M00167,M00344
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005984,GO:0005985,GO:0005986,GO:0005996,GO:0006000,GO:0006002,GO:0006006,GO:0006091,GO:0006094,GO:0006793,GO:0006796,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009719,GO:0009725,GO:0009735,GO:0009767,GO:0009773,GO:0009987,GO:0010033,GO:0010319,GO:0015979,GO:0016051,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019318,GO:0019319,GO:0019637,GO:0019684,GO:0022900,GO:0030388,GO:0031967,GO:0031975,GO:0034637,GO:0042132,GO:0042221,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0046364,GO:0048046,GO:0050308,GO:0050896,GO:0055114,GO:0071704,GO:1901135,GO:1901576
EggNOG free text desc.fructose 1,6-bisphosphate 1-phosphatase activity
EggNOG OGsCOG0158@1,KOG1458@2759
EC3.1.3.11
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFructose-bisphosphatase
Ec32 orthologEc-04_004710.1
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929871.1166067-CDS-H-elongata_contig146649:31..2171622929871.1166067-CDS-H-elongata_contig146649:31..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146649 32..217 -
1691679189.7299504-CDS-H-elongata_contig146649:31..2171691679189.7299504-CDS-H-elongata_contig146649:31..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146649 32..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146649.3168.1prot_H-elongata_contig146649.3168.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146649 32..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146649.3168.1

>prot_H-elongata_contig146649.3168.1 ID=prot_H-elongata_contig146649.3168.1|Name=mRNA_H-elongata_contig146649.3168.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
SKGKLGVIASEEEDHPVLVEEAFNSKYVAVFDPLDGSSNIDAAISTGTIF
GIYEEQEVLIT*
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mRNA from alignment at H-elongata_contig146649:32..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146649.3168.1 ID=mRNA_H-elongata_contig146649.3168.1|Name=mRNA_H-elongata_contig146649.3168.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig146649:32..217- (Himanthalia elongata Himel1 dioecious)
TCGAAAGGTAAGCTGGGCGTGATTGCCTCTGAGGAGGAGGATCACCCCGT
CCTGGTGGAAGAGGCCTTCAACAGTAAGTACGTGGCCGTATTCGATCCGC
TCGACGGCTCCTCCAACATCGACGCCGCCATCAGCACCGGAACCATCTTC
GGGATCTACGAGGAGCAGGAGGTATTAATTACTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig146649:32..217-

>mRNA_H-elongata_contig146649.3168.1 ID=mRNA_H-elongata_contig146649.3168.1|Name=mRNA_H-elongata_contig146649.3168.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig146649:32..217- (Himanthalia elongata Himel1 dioecious)
TCGAAAGGTAAGCTGGGCGTGATTGCCTCTGAGGAGGAGGATCACCCCGT
CCTGGTGGAAGAGGCCTTCAACAGTAAGTACGTGGCCGTATTCGATCCGC
TCGACGGCTCCTCCAACATCGACGCCGCCATCAGCACCGGAACCATCTTC
GGGATCTACGAGGAGCAGGAGGTATTAATTACTTAGTCGAAAGGTAAGCT
GGGCGTGATTGCCTCTGAGGAGGAGGATCACCCCGTCCTGGTGGAAGAGG
CCTTCAACAGTAAGTACGTGGCCGTATTCGATCCGCTCGACGGCTCCTCC
AACATCGACGCCGCCATCAGCACCGGAACCATCTTCGGGATCTACGAGGA
GCAGGAGGTATTAATTACTTAG
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