mRNA_H-elongata_contig146544.3165.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146544.3165.1
Unique NamemRNA_H-elongata_contig146544.3165.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 8.130e-17
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  142 VWIGDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHSRTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILNRTGAHLLGGLLVFPRSHTGSSLRATRLRP 498
            V++GD+GA  H+  S   +   + P P+   ++LGDG    V F G +D+IFH   D  VTL +V  VPGL  ++   +++Q++HE+ LNR  A +LGG +   +   G+ ++ TR+ P
Sbjct:  712 VFLGDTGAVVHVVPSGEKV---RLPLPEERLLMLGDGKHIPVEFFGDLDVIFHCPEDVRVTLQNVGVVPGLALDILPLNMIQDRHEIKLNRDRASILGGRVRMTKFPHGNYIQGTRVDP 827          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A6H5JWT3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWT3_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.290e-13
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 1
Query:  145 WIGDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHS------RTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILNRT----GAHLLGGLLVFPRSHTGSSLRAT 486
            W  DSGA++ +T   + MY+ +   P    I +GD ++ KV+ +G +DL FH       + D  VT+ +V FVPG GFNLFS   V  KHEV+ + T      HL   +L       G +L  T
Sbjct:  439 WQADSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVMDSNTFHNRAGHLSEPILRLSAKQHGITLTGT 562          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A6H5KQJ6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQJ6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-11
Identity = 37/92 (40.22%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  154 DSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHS------RTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILN 411
            DSGA++ ++   + MY+ +   P    I +GD ++ KV+ +G +DL FH       + D  VT+ +V FVPG GFNLFS   V  KHEV +N
Sbjct:  345 DSGASAMISNKVDAMYNVRHLGPDEQFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHEVRIN 436          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A6H5JMH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH6_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.770e-11
Identity = 40/111 (36.04%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  154 DSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHS------RTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILNRTGAHLLGGLLVFPRSHTG 468
            DSGA++ +T   + MY+ +   P    I +GD ++ KV+ +G +DL FH       + D  VT+ +V FVPG GFNLFS   V  KH V +N            +P  H G
Sbjct:  321 DSGASAMITNKVDAMYNVRHLGPDERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVSHKHAVRINPNARD-------YPHGHDG 424          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A6H5KH18_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH18_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.760e-10
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  154 DSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHS------RTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILNRTGA 423
            DSGA + +T   + MY+ +   P    + +GD +  K++ +G +DL FH       + D  VT+ +V FVPG GFNLFS   V  KH+V +N   A
Sbjct:  303 DSGANAMITNKVDAMYNVRHLGPDERFVQIGDSAPIKIAAVGSLDLGFHQIGADGKQEDLDVTVPEVLFVPGCGFNLFSVWKVFHKHKVRINPNAA 398          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A194RJV9_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RJV9_PAPMA)

HSP 1 Score: 55.8 bits (133), Expect = 5.370e-6
Identity = 32/102 (31.37%), Postives = 54/102 (52.94%), Query Frame = 1
Query:  139 DVWIGDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFH-SRTDYPVTLHDVSFVPGLGFNLFSF-HVVQEKHEVILNRTGAHLLGG 438
            D W  DSGAT HMTR ++ MYD + PP  R  I++ +     V  +GK+++    ++ ++ + + +V F+P L  NL S   + +    V    TG ++  G
Sbjct:  218 DDWYIDSGATMHMTRRSDWMYDEQSPPIHR--IMVANSEAIPVQSMGKVNIQTKLNKDEHQIQVRNVLFIPKLSTNLLSVSQLTKSGCNVEFTNTGCNIYNG 317          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: UPI001F12C045 (uncharacterized protein LOC124543428 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F12C045)

HSP 1 Score: 55.5 bits (132), Expect = 6.750e-6
Identity = 31/102 (30.39%), Postives = 54/102 (52.94%), Query Frame = 1
Query:  139 DVWIGDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFH-SRTDYPVTLHDVSFVPGLGFNLFSF-HVVQEKHEVILNRTGAHLLGG 438
            D W  DSGAT HMTR ++ MYD + PP  R ++   +     V  +GK+++    ++ ++ + + +V F+P L  NL S   + +   +V    TG ++  G
Sbjct:  121 DDWYIDSGATMHMTRRSDWMYDEQSPPVHRIKV--ANSEAIPVQSMGKVNIQTKLNKDEHRIQVRNVLFIPKLTTNLLSISQLTKSGCKVEFTNTGCNIYNG 220          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: UPI001C35A33D (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35A33D)

HSP 1 Score: 53.1 bits (126), Expect = 4.140e-5
Identity = 27/79 (34.18%), Postives = 48/79 (60.76%), Query Frame = 1
Query:  139 DVWIGDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFH-SRTDYPVTLHDVSFVPGLGFNLFS 372
            D W  DSGAT H+TR ++ MYD +PPP Q+  I++ +     V  +GK+++  +  + ++ + + +V F+P +  NL S
Sbjct:  243 DDWYIDSGATMHITRCSDWMYDLEPPPIQK--IMVANNEALSVHNMGKVNIQTNICKDEHLIQVRNVLFIPEVSANLLS 319          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A6H5JLU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU1_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.630e-5
Identity = 30/87 (34.48%), Postives = 46/87 (52.87%), Query Frame = 1
Query:  163 ATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHS------RTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVI 405
            A++ +T   + +Y+ +        I +GD ++ KV+ +G +DL FH       + D  VT+ +V FV G GFNLF    V  KHE I
Sbjct:  406 ASAMITNKVDALYNLRHLGADERFIQIGDSALIKVAAVGSLDLRFHQIGADGKQEDLDVTVPEVLFVLGCGFNLFLVWKVSHKHERI 492          
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Match: A0A2P6S703_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6S703_ROSCH)

HSP 1 Score: 52.0 bits (123), Expect = 8.320e-5
Identity = 38/132 (28.79%), Postives = 56/132 (42.42%), Query Frame = 1
Query:   34 PPGEFQSSSANVDNLGGSYLPSAFVGQLVGVEQVGDVWIGDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFHSRTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILNRTGAHL 429
            PP    + SA+ +  G S   S            G+VWIGD+GAT HMT     +   +P       I +G+G    +  IG   L     T Y   L++V  VP L  NL SF+ +   ++  +     H+
Sbjct:   95 PPASLTAMSAHANCNGASSSNSQH-------SNCGEVWIGDTGATHHMTSDLRNLTIAQPYDSNN-SITIGNGQGLSIKHIGAAKLTPGKHTFY---LNNVLHVPSLAVNLLSFNKLCRDNQCFITLDETHI 215          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146544.3165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KYB5_9PHAE8.130e-1736.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWT3_9PHAE2.290e-1336.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQJ6_9PHAE1.700e-1140.22Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMH6_9PHAE1.770e-1136.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH18_9PHAE3.760e-1037.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A194RJV9_PAPMA5.370e-631.37Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F12C0456.750e-630.39uncharacterized protein LOC124543428 n=1 Tax=Vanes... [more]
UPI001C35A33D4.140e-534.18Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A6H5JLU1_9PHAE4.630e-534.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P6S703_ROSCH8.320e-528.79Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146544contigH-elongata_contig146544:579..1076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score66.2
Seed ortholog evalue1.6e-08
Seed eggNOG ortholog103372.F4WCZ8
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3AN9X@33154,3C1QR@33208,3DHT5@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size498
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929870.8950083-CDS-H-elongata_contig146544:578..10761622929870.8950083-CDS-H-elongata_contig146544:578..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146544 579..1076 +
1691679189.6656451-CDS-H-elongata_contig146544:578..10761691679189.6656451-CDS-H-elongata_contig146544:578..1076Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146544 579..1076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146544.3165.1prot_H-elongata_contig146544.3165.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146544 579..1076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146544.3165.1

>prot_H-elongata_contig146544.3165.1 ID=prot_H-elongata_contig146544.3165.1|Name=mRNA_H-elongata_contig146544.3165.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
GHSQALQAHYVPPGEFQSSSANVDNLGGSYLPSAFVGQLVGVEQVGDVWI
GDSGATSHMTRSANLMYDTKPPPPQRFRIILGDGSIKKVSFIGKIDLIFH
SRTDYPVTLHDVSFVPGLGFNLFSFHVVQEKHEVILNRTGAHLLGGLLVF
PRSHTGSSLRATRLRP
back to top

mRNA from alignment at H-elongata_contig146544:579..1076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146544.3165.1 ID=mRNA_H-elongata_contig146544.3165.1|Name=mRNA_H-elongata_contig146544.3165.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=498bp|location=Sequence derived from alignment at H-elongata_contig146544:579..1076+ (Himanthalia elongata Himel1 dioecious)
GGGCATTCCCAGGCTCTACAGGCGCATTATGTGCCGCCAGGCGAGTTTCA GAGTTCGAGTGCAAATGTTGACAACTTAGGTGGTAGCTACCTACCCTCGG CGTTCGTTGGGCAGCTGGTTGGTGTTGAACAAGTTGGAGATGTTTGGATA GGTGACAGTGGAGCCACGTCACACATGACCCGCAGCGCAAACTTAATGTA CGATACGAAACCGCCCCCCCCCCAGAGATTCAGGATTATTCTAGGGGATG GGTCAATTAAAAAAGTGTCATTTATCGGCAAGATTGACCTAATATTCCAC AGTAGGACCGACTACCCGGTCACGCTCCATGATGTTTCATTTGTGCCCGG CTTAGGGTTCAACCTCTTCTCCTTCCACGTAGTGCAGGAAAAGCATGAAG TTATTCTGAATAGGACAGGAGCGCATTTGCTTGGGGGTCTCCTAGTATTC CCCCGGAGCCACACCGGATCGTCACTGCGTGCCACTAGACTAAGACCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig146544:579..1076+

>mRNA_H-elongata_contig146544.3165.1 ID=mRNA_H-elongata_contig146544.3165.1|Name=mRNA_H-elongata_contig146544.3165.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig146544:579..1076+ (Himanthalia elongata Himel1 dioecious)
GGGCATTCCCAGGCTCTACAGGCGCATTATGTGCCGCCAGGCGAGTTTCA
GAGTTCGAGTGCAAATGTTGACAACTTAGGTGGTAGCTACCTACCCTCGG
CGTTCGTTGGGCAGCTGGTTGGTGTTGAACAAGTTGGAGATGTTTGGATA
GGTGACAGTGGAGCCACGTCACACATGACCCGCAGCGCAAACTTAATGTA
CGATACGAAACCGCCCCCCCCCCAGAGATTCAGGATTATTCTAGGGGATG
GGTCAATTAAAAAAGTGTCATTTATCGGCAAGATTGACCTAATATTCCAC
AGTAGGACCGACTACCCGGTCACGCTCCATGATGTTTCATTTGTGCCCGG
CTTAGGGTTCAACCTCTTCTCCTTCCACGTAGTGCAGGAAAAGCATGAAG
TTATTCTGAATAGGACAGGAGCGCATTTGCTTGGGGGTCTCCTAGTATTC
CCCCGGAGCCACACCGGATCGTCACTGCGTGCCACTAGACTAAGACCAGG
GCATTCCCAGGCTCTACAGGCGCATTATGTGCCGCCAGGCGAGTTTCAGA
GTTCGAGTGCAAATGTTGACAACTTAGGTGGTAGCTACCTACCCTCGGCG
TTCGTTGGGCAGCTGGTTGGTGTTGAACAAGTTGGAGATGTTTGGATAGG
TGACAGTGGAGCCACGTCACACATGACCCGCAGCGCAAACTTAATGTACG
ATACGAAACCGCCCCCCCCCCAGAGATTCAGGATTATTCTAGGGGATGGG
TCAATTAAAAAAGTGTCATTTATCGGCAAGATTGACCTAATATTCCACAG
TAGGACCGACTACCCGGTCACGCTCCATGATGTTTCATTTGTGCCCGGCT
TAGGGTTCAACCTCTTCTCCTTCCACGTAGTGCAGGAAAAGCATGAAGTT
ATTCTGAATAGGACAGGAGCGCATTTGCTTGGGGGTCTCCTAGTATTCCC
CCGGAGCCACACCGGATCGTCACTGCGTGCCACTAGACTAAGACCA
back to top