mRNA_H-elongata_contig146336.3156.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig146336.3156.1
Unique NamemRNA_H-elongata_contig146336.3156.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.570e-18
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCI 303
            + TC NG+ G+ + ++CC LGCGTCGGSGCS R   EGL  +DCC   I+ +G+ C +SG APCI
Sbjct:   22 AQTCDNGLAGVSTGVYCCTLGCGTCGGSGCSSR--AEGLNGDDCCTSNIASNGILCADSGAAPCI 84          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.430e-17
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIGEGEN 321
            + TC NG+ G+    +CC LGCGTCGGSGCS R   EGLT +DCC   I+ +G+ C +SG APCI   G++
Sbjct:   22 AQTCDNGLAGVSKGEYCCTLGCGTCGGSGCSSR--AEGLTGDDCCTSNIASNGILCADSGAAPCIGDVGDD 90          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 8.530e-16
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query:  109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCI 303
            + TC NG+ G+ +  +CC LGCGTCGG GCS R   EGL   DCC   I+++G+ C  SG APCI
Sbjct:    7 AQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTR--AEGLDGNDCCTANIAQNGILCAESGAAPCI 69          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.790e-16
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  109 SNTCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIG 309
            S TCSNG+ GI+   + CCPLGCG CGG+GC+  G   GL A+ CC   I  S  YCD +  APCIIG
Sbjct:  344 SETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIG 411          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.100e-15
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1
Query:  109 SNTCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCII 306
            + TCSN + GI+     CCPLGCG CGGSGCS  G   GL AE CC   + +SG YCD++  APCII
Sbjct:  739 ATTCSNDLEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.970e-13
Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  115 TCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAP----CIIGEGE 318
            TCS+GI GI+     CCPLGCG CGG+GC+  G   GL +  CC   I  SG YCD++G AP    CI  +GE
Sbjct:   81 TCSDGIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDDTGEAPNDLECIDHKGE 153          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.170e-13
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  106 ASNTCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIG 309
            A +T  +G  GI+   + CCP+GCG CGG GCS  G+  GL +E CC   +   GVYCD++  APCIIG
Sbjct:  569 ADDTQIDGTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIG 637          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.640e-12
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  106 ASNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIGE 312
            +  TCSNG+ G+E    CCP+ CGTCGG+GC   G+  GLT  DCC   I E    C  +  APC+I E
Sbjct:   20 SGTTCSNGLSGLEKGGVCCPVECGTCGGTGC---GSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDE 85          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.120e-11
Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1
Query:  109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCII 306
            + TCSNG+ G E    CC +GCGTCGG GCS+ G      AE CC   I  +G  C   G APCI+
Sbjct:  397 AQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQG----AESCCTSNIIAAGEPCSEKGAAPCIM 458          
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.720e-10
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query:  109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCII 306
            + TCSNG+ G E+   CC +GCGTCGG GCS+ G  EG  AE CC   I  +   C   G APCI+
Sbjct:  378 AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLG--EG--AESCCTSNIIAAREPCSEKGAAPCIM 439          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JU45_9PHAE5.570e-1853.85WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K646_9PHAE4.430e-1752.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW06_9PHAE8.530e-1652.31WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC43_9PHAE8.790e-1654.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYT7_9PHAE1.100e-1555.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M2_9PHAE1.970e-1350.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUS5_9PHAE2.170e-1349.28MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JNF5_9PHAE2.640e-1247.83MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JP22_9PHAE4.120e-1148.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY01_ECTSI2.720e-1050.00Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig146336contigH-elongata_contig146336:23..346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue9.1e-13
Seed eggNOG ortholog2880.D7FQV4
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.9972556-CDS-H-elongata_contig146336:22..3461622929869.9972556-CDS-H-elongata_contig146336:22..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146336 23..346 +
1691679189.2881591-CDS-H-elongata_contig146336:22..3461691679189.2881591-CDS-H-elongata_contig146336:22..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig146336 23..346 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig146336.3156.1prot_H-elongata_contig146336.3156.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig146336 23..346 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig146336.3156.1

>prot_H-elongata_contig146336.3156.1 ID=prot_H-elongata_contig146336.3156.1|Name=mRNA_H-elongata_contig146336.3156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
TTAPPTPAPSRDQASAPEKNPSLAPMIAPTPPPSTASNTCSNGIIGIESY
IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPC
IIGEGEN*
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mRNA from alignment at H-elongata_contig146336:23..346+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig146336.3156.1 ID=mRNA_H-elongata_contig146336.3156.1|Name=mRNA_H-elongata_contig146336.3156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig146336:23..346+ (Himanthalia elongata Himel1 dioecious)
ACCACTGCCCCCCCAACCCCTGCACCATCGAGGGATCAGGCATCTGCGCC TGAGAAAAACCCATCACTAGCGCCCATGATAGCCCCAACACCGCCTCCAT CGACAGCTAGTAACACGTGCAGCAACGGAATTATAGGCATCGAAAGCTAT ATTTTCTGTTGCCCTCTCGGGTGTGGCACCTGCGGTGGTTCAGGCTGCAG CCGACGGGGCACGGAAGAGGGCTTGACGGCTGAAGACTGTTGTGTGTTGC GCATTAGCGAGTCGGGCGTTTACTGCGACAACTCGGGCACAGCGCCGTGT ATCATTGGTGAAGGTGAGAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig146336:23..346+

>mRNA_H-elongata_contig146336.3156.1 ID=mRNA_H-elongata_contig146336.3156.1|Name=mRNA_H-elongata_contig146336.3156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig146336:23..346+ (Himanthalia elongata Himel1 dioecious)
ACCACTGCCCCCCCAACCCCTGCACCATCGAGGGATCAGGCATCTGCGCC
TGAGAAAAACCCATCACTAGCGCCCATGATAGCCCCAACACCGCCTCCAT
CGACAGCTAGTAACACGTGCAGCAACGGAATTATAGGCATCGAAAGCTAT
ATTTTCTGTTGCCCTCTCGGGTGTGGCACCTGCGGTGGTTCAGGCTGCAG
CCGACGGGGCACGGAAGAGGGCTTGACGGCTGAAGACTGTTGTGTGTTGC
GCATTAGCGAGTCGGGCGTTTACTGCGACAACTCGGGCACAGCGCCGTGT
ATCATTGGTGAAGGTGAGAACTAGACCACTGCCCCCCCAACCCCTGCACC
ATCGAGGGATCAGGCATCTGCGCCTGAGAAAAACCCATCACTAGCGCCCA
TGATAGCCCCAACACCGCCTCCATCGACAGCTAGTAACACGTGCAGCAAC
GGAATTATAGGCATCGAAAGCTATATTTTCTGTTGCCCTCTCGGGTGTGG
CACCTGCGGTGGTTCAGGCTGCAGCCGACGGGGCACGGAAGAGGGCTTGA
CGGCTGAAGACTGTTGTGTGTTGCGCATTAGCGAGTCGGGCGTTTACTGC
GACAACTCGGGCACAGCGCCGTGTATCATTGGTGAAGGTGAGAACTAG
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