mRNA_H-elongata_contig146336.3156.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 5.570e-18 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1
Query: 109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCI 303
+ TC NG+ G+ + ++CC LGCGTCGGSGCS R EGL +DCC I+ +G+ C +SG APCI
Sbjct: 22 AQTCDNGLAGVSTGVYCCTLGCGTCGGSGCSSR--AEGLNGDDCCTSNIASNGILCADSGAAPCI 84
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 4.430e-17 Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIGEGEN 321
+ TC NG+ G+ +CC LGCGTCGGSGCS R EGLT +DCC I+ +G+ C +SG APCI G++
Sbjct: 22 AQTCDNGLAGVSKGEYCCTLGCGTCGGSGCSSR--AEGLTGDDCCTSNIASNGILCADSGAAPCIGDVGDD 90
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 8.530e-16 Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCI 303
+ TC NG+ G+ + +CC LGCGTCGG GCS R EGL DCC I+++G+ C SG APCI
Sbjct: 7 AQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTR--AEGLDGNDCCTANIAQNGILCAESGAAPCI 69
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JC43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC43_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 8.790e-16 Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 109 SNTCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIG 309
S TCSNG+ GI+ + CCPLGCG CGG+GC+ G GL A+ CC I S YCD + APCIIG
Sbjct: 344 SETCSNGVEGIDGNGVVCCPLGCGQCGGAGCTTSGAAAGLGADSCCGGSIKASDEYCDETNEAPCIIG 411
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JYT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYT7_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 1.100e-15 Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 1
Query: 109 SNTCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCII 306
+ TCSN + GI+ CCPLGCG CGGSGCS G GL AE CC + +SG YCD++ APCII
Sbjct: 739 ATTCSNDLEGIDHKGEVCCPLGCGQCGGSGCSTSGASNGLGAESCCSSEVKDSGRYCDDANEAPCII 805
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5K5M2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M2_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.970e-13 Identity = 37/73 (50.68%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 115 TCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAP----CIIGEGE 318
TCS+GI GI+ CCPLGCG CGG+GC+ G GL + CC I SG YCD++G AP CI +GE
Sbjct: 81 TCSDGIEGIDGNGAVCCPLGCGQCGGTGCTSAGAANGLDSGSCCGGSIKSSGNYCDDTGEAPNDLECIDHKGE 153
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 2.170e-13 Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 106 ASNTCSNGIIGIESY-IFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIG 309
A +T +G GI+ + CCP+GCG CGG GCS G+ GL +E CC + GVYCD++ APCIIG
Sbjct: 569 ADDTQIDGTEGIDGNGVVCCPIGCGQCGGDGCSTAGSANGLGSESCCGGGVKSLGVYCDDTNEAPCIIG 637
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.640e-12 Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 106 ASNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCIIGE 312
+ TCSNG+ G+E CCP+ CGTCGG+GC G+ GLT DCC I E C + APC+I E
Sbjct: 20 SGTTCSNGLSGLEKGGVCCPVECGTCGGTGC---GSRPGLTKYDCCTSTIKEDNHLCSVTKEAPCVIDE 85
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 4.120e-11 Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCII 306
+ TCSNG+ G E CC +GCGTCGG GCS+ G AE CC I +G C G APCI+
Sbjct: 397 AQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQG----AESCCTSNIIAAGEPCSEKGAAPCIM 458
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 2.720e-10 Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 1
Query: 109 SNTCSNGIIGIESYIFCCPLGCGTCGGSGCSRRGTEEGLTAEDCCVLRISESGVYCDNSGTAPCII 306
+ TCSNG+ G E+ CC +GCGTCGG GCS+ G EG AE CC I + C G APCI+
Sbjct: 378 AQTCSNGLAGYENSGACCSVGCGTCGGEGCSQLG--EG--AESCCTSNIIAAREPCSEKGAAPCIM 439 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146336.3156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146336.3156.1 >prot_H-elongata_contig146336.3156.1 ID=prot_H-elongata_contig146336.3156.1|Name=mRNA_H-elongata_contig146336.3156.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp TTAPPTPAPSRDQASAPEKNPSLAPMIAPTPPPSTASNTCSNGIIGIESYback to top mRNA from alignment at H-elongata_contig146336:23..346+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146336.3156.1 ID=mRNA_H-elongata_contig146336.3156.1|Name=mRNA_H-elongata_contig146336.3156.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig146336:23..346+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146336:23..346+ >mRNA_H-elongata_contig146336.3156.1 ID=mRNA_H-elongata_contig146336.3156.1|Name=mRNA_H-elongata_contig146336.3156.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig146336:23..346+ (Himanthalia elongata Himel1 dioecious)back to top |