mRNA_H-elongata_contig146247.3153.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A6H5K1D7_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D7_9PHAE) HSP 1 Score: 231 bits (589), Expect = 2.010e-71 Identity = 106/125 (84.80%), Postives = 119/125 (95.20%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQ 381
+TECGSAFTSKLEGMFKDIDLSRDLM TY+ HLKTKL DR+VF+L +S+EMDLHVQVLTTGYWPGY +M+VGMP+EM+EHVECFK YYQNKYQGRRL+WQP+LGQCI+KVAFPKGRKELAVSQLQ
Sbjct: 119 KTECGSAFTSKLEGMFKDIDLSRDLMTTYSHHLKTKLHDRTVFKLDKSREMDLHVQVLTTGYWPGYPAMEVGMPDEMKEHVECFKCYYQNKYQGRRLVWQPVLGQCILKVAFPKGRKELAVSQLQ 243
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: D7FQS5_ECTSI (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQS5_ECTSI) HSP 1 Score: 229 bits (585), Expect = 1.120e-67 Identity = 104/125 (83.20%), Postives = 119/125 (95.20%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQ 381
+TECGSAFTSKLEGMFKDIDLSRDLM TY+ HLKTKL DR+VF+L +S+EMDLHVQVLTTGYWPGY +M+VGMP+EM+EHVECF+ YYQNKYQGRRL+WQP+LGQC++KVAFPKGRKELAVSQLQ
Sbjct: 462 KTECGSAFTSKLEGMFKDIDLSRDLMTTYSHHLKTKLHDRTVFKLDKSREMDLHVQVLTTGYWPGYPAMEVGMPDEMKEHVECFRCYYQNKYQGRRLVWQPVLGQCVLKVAFPKGRKELAVSQLQ 586
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A835ZG50_9STRA (Cullin family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG50_9STRA) HSP 1 Score: 157 bits (397), Expect = 6.320e-41 Identity = 72/125 (57.60%), Postives = 93/125 (74.40%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQ 381
+ ECG+A+TSKLEGMF+DI+LSRDLMA Y HL+ +D S F RS+++D+ V VLTTGYWP Y DV +P E+++H+ F+ +Y K+QGRR+ WQ LG CI+K FP GRKELAVSQLQ
Sbjct: 511 KAECGAAYTSKLEGMFRDIELSRDLMANYTNHLRDHREDPSFFTHARSRDIDVSVHVLTTGYWPAYPPADVAVPAEIQDHMARFEDFYAIKFQGRRIAWQHNLGHCILKARFPSGRKELAVSQLQ 635
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A7S4D7J7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7J7_HETAK) HSP 1 Score: 137 bits (344), Expect = 1.190e-34 Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQVRRIDLF 402
+ ECG+AFT+KLEGMFKDIDLSRDLMA Y Q+ + D S ++ +++ QVLTTGYWP Y M++ +P E+ + E F++YY NKYQGRR+ WQ LGQCIVK + +KEL+VSQLQ + LF
Sbjct: 177 KNECGAAFTTKLEGMFKDIDLSRDLMAQYTQYQADR--DASGAEAPPARPLEMAAQVLTTGYWPTYPPMELRLPPEIVFYQERFRNYYTNKYQGRRIEWQHFLGQCIVKANCFQKKKELSVSQLQTMVLVLF 306
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A024UQT5_9STRA (CULLIN_2 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UQT5_9STRA) HSP 1 Score: 138 bits (348), Expect = 2.590e-34 Identity = 63/125 (50.40%), Postives = 92/125 (73.60%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQ 381
+TECGS+FT+KLEGMFKDIDLSR++M + QH +++ ++ +L+ ++D+HVQVLTTG+WP Y+ ++ +P+ + F+++Y +KY GR+L WQ LG C+VK FPKGRKELAVS Q
Sbjct: 459 KTECGSSFTTKLEGMFKDIDLSRNVMTQFQQHAPSRM---ALSQLEH--KVDMHVQVLTTGFWPPYVPTEINLPQSLAPSKAIFEAFYASKYSGRQLQWQHSLGHCLVKATFPKGRKELAVSLFQ 578
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A7S3XVG8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVG8_HETAK) HSP 1 Score: 137 bits (344), Expect = 2.870e-34 Identity = 70/132 (53.03%), Postives = 92/132 (69.70%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQVRRIDLF 402
+ ECG+AFT+KLEGMFKDIDLSRDLMA Y Q+ + D S ++ +++ QVLTTGYWP Y M++ +P E+ + E F++YY NKYQGRR+ WQ LGQCIVK + +KEL+VSQLQ + LF
Sbjct: 251 KNECGAAFTTKLEGMFKDIDLSRDLMAQYTQYQADR--DASGAEAPPARPLEMAAQVLTTGYWPTYPPMELRLPPEIVFYQERFRNYYTNKYQGRRIEWQHFLGQCIVKANCFQKKKELSVSQLQTMVLVLF 380
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A1Y1Y0T4_9FUNG (Ubiquitin-protein ligase, cullin 4 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y0T4_9FUNG) HSP 1 Score: 138 bits (347), Expect = 3.950e-34 Identity = 66/132 (50.00%), Postives = 93/132 (70.45%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQVRRIDLF 402
+TECG++FTSKLEGMFKD+D+SRD+M ++ Q K + + K+++L+V VLT GYWP Y ++ +PE+M E+ E FK++Y +K+ GRRLMWQ LG C++K FPKG+KELAVS Q + LF
Sbjct: 532 KTECGASFTSKLEGMFKDMDVSRDIMISFRQTQKYQ---------ELCKDIELNVSVLTQGYWPTYTPTEITLPEQMTEYQEVFKAFYLSKHHGRRLMWQHSLGHCVLKAYFPKGKKELAVSLYQAMVLLLF 654
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A7J7LJH5_9MAGN (CULLIN_2 domain-containing protein n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J7LJH5_9MAGN) HSP 1 Score: 134 bits (338), Expect = 4.250e-34 Identity = 67/132 (50.76%), Postives = 89/132 (67.42%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQVRRIDLF 402
+TECGS FT+KLEGMFKDI+LS+++ ++ Q S R++ ++L V VLTTGYWP Y MD+ +P E+ + + FK +Y +KY GRRLMWQ LG C++KV FPKGRKELAVS Q + LF
Sbjct: 135 KTECGSQFTNKLEGMFKDIELSKEINESFKQS--------SQARMKLPSGIELSVHVLTTGYWPTYPPMDMQLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKVEFPKGRKELAVSLFQTVVLMLF 258
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A067D4M1_SAPPC (CULLIN_2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D4M1_SAPPC) HSP 1 Score: 137 bits (346), Expect = 4.820e-34 Identity = 65/125 (52.00%), Postives = 91/125 (72.80%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQ 381
+TECGS+FT+KLEGMFKDIDLSR +M + QH ++L ++ L+ +MD+HV VLTTG+WP Y+ ++ +P+ + F+++Y +KYQGR+L WQ LG C+VK +FPKGRKELAVS Q
Sbjct: 458 KTECGSSFTNKLEGMFKDIDLSRSVMTQFQQHNASQL---AISNLKH--KMDMHVHVLTTGFWPAYVPTEILLPQSLLPLKAIFEAFYTSKYQGRQLQWQHSLGHCLVKASFPKGRKELAVSVFQ 577
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Match: A0A2P6MV97_9EUKA (Ubiquitin-protein ligase, Cullin 4 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MV97_9EUKA) HSP 1 Score: 137 bits (346), Expect = 5.970e-34 Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 7 QTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSKEMDLHVQVLTTGYWPGYLSMDVGMPEEMREHVECFKSYYQNKYQGRRLMWQPMLGQCIVKVAFPKGRKELAVSQLQ 381
+TECGSAFT+KLEGMFKD+DLS D+M+ ++ S F+ + S EMD++VQVLT GYWP Y +++ +P+ M E+ E FK +Y +KY GR+L WQ LGQC ++ AFP G KEL V+ LQ
Sbjct: 911 KTECGSAFTNKLEGMFKDVDLSSDIMSAFSD---------SKFQDELSGEMDMNVQVLTAGYWPAYTPIEIILPKNMMEYQEVFKKFYLSKYSGRKLTWQNSLGQCTLRAAFPAGTKELLVTLLQ 1026 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig146247.3153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig146247.3153.1 >prot_H-elongata_contig146247.3153.1 ID=prot_H-elongata_contig146247.3153.1|Name=mRNA_H-elongata_contig146247.3153.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=205bp RQQTECGSAFTSKLEGMFKDIDLSRDLMATYAQHLKTKLDDRSVFRLQRSback to top mRNA from alignment at H-elongata_contig146247:5..1255- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig146247.3153.1 ID=mRNA_H-elongata_contig146247.3153.1|Name=mRNA_H-elongata_contig146247.3153.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1251bp|location=Sequence derived from alignment at H-elongata_contig146247:5..1255- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig146247:5..1255- >mRNA_H-elongata_contig146247.3153.1 ID=mRNA_H-elongata_contig146247.3153.1|Name=mRNA_H-elongata_contig146247.3153.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at H-elongata_contig146247:5..1255- (Himanthalia elongata Himel1 dioecious)back to top |