mRNA_H-elongata_contig14623.3150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14623.3150.1
Unique NamemRNA_H-elongata_contig14623.3150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot
Match: A0A6H5K4D6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D6_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.820e-40
Identity = 119/288 (41.32%), Postives = 155/288 (53.82%), Query Frame = 3 
Query:    3 IESAKGGKEDGRALVHLVALGSVVTDLLLNRARVEAKHAWVLLAFLLAWAMEQIAWVKSKPSHAACYEVFDAKDPSSLWTGVIAVILVVAVVVVYAVLCTQRDRLTSQYERSDVEFTGPD------VEEDAGQEATETVGMPLXXXXXXXXPTSFRPPPA----RRASVVNPIFAGSGSRIKQK----WHKSSGDPIGPTCDNRTSLTSNDSDMSPAEDLEARWSADAEPPSENSYVNSTNGPSLALASTAN-GARGRRVEWGATGGGPLVAHPSTQAAYSGAAAWVR 821
            +E A+  +  GRA+V  + L  ++ DL++NR  VEAKHAW+LLAFLLAW +EQ+AWV +   H ACYEVFDA+  ++  + V+A ++VVA+   YA LC QRDRL S++        GPD      VEED G EA  T  M L        P   +P PA     R+ VVNP+FAG GSR+K+       K SG  +G   + RTSL S ++DMS  ED EA W      P +    NS  G   +  S+A+ G       W   GGG             GAAAWVR
Sbjct:   42 LEYARDDEGQGRAVVSSIGLVVLLADLVVNRCTVEAKHAWILLAFLLAWVVEQVAWVSADSQHEACYEVFDAEGLNNAISAVVASLVVVALAFAYAALCVQRDRLLSRFGFG----PGPDPARQDDVEEDLGDEAAVTRVMTL--------PPMTQPVPAPLTSERSYVVNPVFAGKGSRMKRNPLPHGMKRSGSSVGGG-ERRTSLASMETDMSSGEDHEAGW------PLDGDVGNSGAGSKHSRGSSADVGMSNHLSSWAGYGGG-------------GAAAWVR 297
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BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot
Match: D7G228_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G228_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.030e-39
Identity = 122/289 (42.21%), Postives = 157/289 (54.33%), Query Frame = 3 
Query:    3 IESAKGGKEDGRALVHLVALGSVVTDLLLNRARVEAKHAWVLLAFLLAWAMEQIAWVKSKPSHAACYEVFDAKDPSSLWTGVIAVILVVAVVVVYAVLCTQRDRLTSQYERSDVEFTGPD------VEEDAGQEATETVGMPLXXXXXXXXPTSFRPPPARRAS----VVNPIFAGSGSRIKQK----WHKSSGDPIGPTCDNRTSLTSNDSDMSPAEDLEARWSADAEPPSENSYVNSTNGPSLALASTANGARGRRVEWGATGGGPLVAHPSTQAAYSG--AAAWVR 821
            +E A+  +  GRA+V  + LG ++ DL++N+  VEAKHAWVLLAFLLAW +EQ+AWV +   H ACYEVFDA+  ++  + V+A ++VVA+   YA LC QRDRL S++        GPD      VEED G EA  T  M L        P   +P PA  AS    VVNP+FAG GSR+K+       K SG   G   + RTSL S ++DMS  ED EA W      P +    NS             GA G R   G++    +  H S+ A Y G  AAAWVR
Sbjct:  150 LEYARDDEGQGRAVVSSIGLGVLLADLVVNQCTVEAKHAWVLLAFLLAWVVEQVAWVSADSEHEACYEVFDAEGLNNALSAVVASLVVVALAFAYAALCVQRDRLLSRFGFG----PGPDRARQDDVEEDLGDEAAVTRVMTL--------PPMTQPVPAPLASERSYVVNPVFAGKGSRMKRNPLPHGVKRSGS-SGGGGERRTSLASMETDMSSGEDHEAGW------PLDGDVKNS-------------GAAGSRHSRGSSADAGMPNHLSSWAGYGGGGAAAWVR 406
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14623.3150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K4D6_9PHAE3.820e-4041.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G228_ECTSI1.030e-3942.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14623contigH-elongata_contig14623:531..4523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003600.1
Exons3
Model size3149
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14623.3150.1prot_H-elongata_contig14623.3150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14623 1090..2303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.4611528-UTR-H-elongata_contig14623:530..6371622929869.4611528-UTR-H-elongata_contig14623:530..637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14623 531..637 +
1691679189.0777714-UTR-H-elongata_contig14623:530..6371691679189.0777714-UTR-H-elongata_contig14623:530..637Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14623 531..637 +
1622929869.4735153-UTR-H-elongata_contig14623:1044..10891622929869.4735153-UTR-H-elongata_contig14623:1044..1089Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14623 1045..1089 +
1691679189.085269-UTR-H-elongata_contig14623:1044..10891691679189.085269-UTR-H-elongata_contig14623:1044..1089Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14623 1045..1089 +
1622929869.5161083-UTR-H-elongata_contig14623:2303..45231622929869.5161083-UTR-H-elongata_contig14623:2303..4523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14623 2304..4523 +
1691679189.113827-UTR-H-elongata_contig14623:2303..45231691679189.113827-UTR-H-elongata_contig14623:2303..4523Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14623 2304..4523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.4884858-CDS-H-elongata_contig14623:1089..12191622929869.4884858-CDS-H-elongata_contig14623:1089..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14623 1090..1219 +
1691679189.0947568-CDS-H-elongata_contig14623:1089..12191691679189.0947568-CDS-H-elongata_contig14623:1089..1219Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14623 1090..1219 +
1622929869.4998672-CDS-H-elongata_contig14623:1656..23031622929869.4998672-CDS-H-elongata_contig14623:1656..2303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14623 1657..2303 +
1691679189.104265-CDS-H-elongata_contig14623:1656..23031691679189.104265-CDS-H-elongata_contig14623:1656..2303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14623 1657..2303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14623.3150.1

>prot_H-elongata_contig14623.3150.1 ID=prot_H-elongata_contig14623.3150.1|Name=mRNA_H-elongata_contig14623.3150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
MEQIAWVKSKPSHAACYEVFDAKDPSSLWTGVIAVILVVAVVVVYAVLCT
QRDRLTSQYERSDVEFTGPDVEEDAGQEATETVGMPLPLPLPPPLPTSFR
PPPARRASVVNPIFAGSGSRIKQKWHKSSGDPIGPTCDNRTSLTSNDSDM
SPAEDLEARWSADAEPPSENSYVNSTNGPSLALASTANGARGRRVEWGAT
GGGPLVAHPSTQAAYSGAAAWVRPSNSDATPTARGQRGVLRRPPSRSLST
SSNSRWPG*
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mRNA from alignment at H-elongata_contig14623:531..4523+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14623.3150.1 ID=mRNA_H-elongata_contig14623.3150.1|Name=mRNA_H-elongata_contig14623.3150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3993bp|location=Sequence derived from alignment at H-elongata_contig14623:531..4523+ (Himanthalia elongata Himel1 dioecious)
GGATCGAAAGCGCGAAGGGCGGCAAGGAGGATGGGCGGGCGCTGGTCCAT
TTGGTGGCGCTAGGATCGGTTGTGACTGATCTGCTCCTCAACAGAGCCAG
GGTGGAGGTGAGAAGTGACAGGCGGCCTAGAGACCTCTGGATGTTGCTTC
ATCCCTCGAATGACCTCACCTTCTTGCCAATCGCGGTTGGTGTGCTGTCC
CAACAACGCAACGGAAGGGACCAGGATAGGGGCGGTGTTGTCCGCGACGT
GTTTTTTTCTTCTCTTCTAAACAACTTGTTTGAGTTGATTTCACACTTGA
CAGAATAAGCTCATGCACAAGGTGTACATGTCTCCCGTATGGTACATCGG
CAGACGGTCTTACTAGAAATGCGAGATCTGCAAGGCCATACCATTGCGCT
GCGCCATTGCTCCTCCCCTAGAGGAGATCGTATCTATGATGAATCGCGCG
TTATCTTGCGCCGCGAGACTTTTTTCAATCGAGACCCCGATACTCTTCCA
CTCGACGTCACCAGGCGAAGCACGCGTGGGTGTTGTTGGCCTTTCTGCTA
GCCTGGGCGATGGAGCAGATCGCCTGGGTGAAGTCCAAACCCTCTCACGC
GGCGTGCTACGAGGTGTTCGACGCGAAGGACCCGTCTAGCCTCTGGACGG
GAGTGATCGCTGTGATCCTTGTCGTTGCTGTGGTAGTTGGTGAGTGAGTA
TCTTTGGAGGCTTTTTCAGGCCGTGTGCCGTATACTCTATATATATTTTT
CAAAATTGAAACACTTGGAAGGGTTAATCTTTCCCACATAGAGTATTGTT
GGGATTTTATCTAGGGGCTTCTGCCTTATTCAAAAGAACCGCGACTTACT
GTTTTCGAGTCTAACCTACCCCCAAGTTTATCCCGTATGAAGCTACTGCT
TTCTATGGCGCAACGTGTGTTGGCATATCTTGTTCATCGAGGCGCCATCG
GCACGCCCTTACAGGAACCCATAGCACCCCGTCCCCCCTCCTTTTAAAAG
CCTACTGTATATAAACTCTCAAAAAATGTGCATCAACGCAACAACCCTTC
CTTTGTGTTTTCGTATTTCGTGTATATTGCTCTTTGCTGGCATTGTGGCT
CCTTCTCGTCTTTTCTTCGGCGGAAGTGTACGCGGTATTGTGCACCCAGC
GCGACAGATTGACATCGCAATACGAGAGAAGCGACGTCGAATTCACGGGG
CCGGACGTCGAGGAAGACGCCGGTCAGGAGGCGACGGAGACGGTCGGAAT
GCCTCTGCCTTTGCCTCTGCCCCCGCCCCTGCCCACATCCTTCCGCCCCC
CGCCTGCCCGGCGCGCTTCCGTGGTCAACCCCATATTTGCCGGCTCTGGA
TCACGCATCAAACAAAAGTGGCATAAAAGTAGCGGTGACCCGATTGGCCC
TACCTGCGACAACCGCACCTCCCTGACGTCCAATGACTCCGATATGTCTC
CGGCCGAGGACCTGGAGGCGAGGTGGTCGGCGGACGCGGAACCTCCATCA
GAGAACAGTTATGTAAATAGCACGAATGGCCCCTCTCTTGCGCTTGCTTC
CACGGCAAATGGCGCCAGGGGCAGGCGAGTGGAGTGGGGAGCAACGGGTG
GAGGGCCTTTGGTGGCGCACCCTTCGACTCAGGCTGCGTATAGCGGCGCG
GCGGCGTGGGTACGACCGAGCAACAGCGACGCAACACCGACCGCGCGAGG
CCAACGAGGGGTGCTGAGACGACCCCCTTCTCGCAGTCTGTCCACGTCGT
CGAACTCGAGATGGCCCGGATGAGCGGACCATAAACGGTGCACGATGCAC
CCATGTACGAAGTCGGGTGTCGATGTGATACGATGCGATGAAAAGCGAAA
CAATAGAATTCGCAGCAGAACGTTTTCTCCTCAATTGTCTGTGAAAAATA
CGTTTTCGGGGTTTCCATCCCCTCATCCTCTCTCTGACGTGTTGTCGTTT
CGCGTCCATGTGTGTTATCCTGTGGATGTCGAGTTGACTATGCCTGCTAC
TTTTTGAGTGGTTTCGCAAGGCACGCCTCATAGCGAGGACGTGGGGGAGA
TATATCACGCCACAGTGACTTGTGTGTAACTATCCCTGTATTTTAGTTAG
AACAGCTTGAGATGCTGATTTGGACCTTTTAAAATACAATCCCAGCCTTT
CGCGGGAATACTCCTGCTGAGTTCCCCTTCTCTACTTGACAGGGCTTTTG
GCTTTGTAGTTTTCGATGTCGTGTGTAAGCCTGGCGCTTGCGCTGCGCAA
TGTGCCCTTGAGTGCTGTAGAACATGGTTCTTGACAGCATCCTACGCATC
CCGTCGCTTGCCCCATTATATCGTGTGTGGTATAATGGCGTGTACGGTTG
TGAAACCGATGGCACGCCTACAATTGTATTTTTTTGTCTTGCCGCTGCTG
CCGTGTCCTCGATGTTTGATGCATGCGCTTAGGCATATCGATGTGTCTAC
AATTGTATCTTGTCTATCGCTGCAACCGTGTCCTCGATGTTGGATGTATG
CGCTCGGGCATATCACTGTGTTTGCTGTCGATCATAGGCTGAGTTCGTGG
GGGGGGGGCGTGGACACTTATCATATTATGTAAAGGGTTAGTCGTGTACG
TGTTTTGGCCGTGTCATGTCTTGTCTTATGTCGAAGGAAATATAGACGGG
GGTTATTCTCGGCCCGCTGATTAGCTCTATTCGTTGGGTGTGCTGGAAAA
ACGGTCTCGTTCGCAAGGCGTTAGAAGCTTTGCTCGAGAAGATTGTTTCG
TTGCGCTTCGATCGTCATCGATTGGGGTGGTACTGTGTTTGCGTGGTGAT
CGTTGTGCCTTAATCAGGCACGAGGCAGCCAACTATAGAACACGAATATA
ATGAGTTAGATTTAACATGGCTGGGCGGGAACCTAGATATCAATCGCTAT
ATCACAAGGTACCGCCGTTTAGAGCCTCAGAGTGCCTGAATGCTTGATGT
GTAGTCAAATTTTGGATTATTGCTGCTCGGAGCCAGGGATAGAGTCTTGT
GTTTTGAAGGGGGAAAAAATGCGAAACTCTAGATGAAATCAGAGTTTTAA
CGTGTTTTACGTTTAACCTGGGGTTGTGTGTTTGGGTGAAAAATAAATAA
ATATATATATATACATATATATAACGCCTTTGTTATTATACAAAATATCG
GTGGGAAGAAAAACGCCTCATCGAGAGATCATTTATTTTTCTGTTACTGT
CCCTTTTCTCGGTAACTGTTGGCGTTAGTGTAAAACTAGACGTTTTCTTA
GAAAGTATATGTGTTGTACCAAGGTATCATGTAATTTAAGATTTCTCTGG
AATTAGGGAGATACTTTGAACTCTGCGGGCACCCATCCGTGCTCTCGTCT
CAGTTGTCTTTCGAGGGCGATGCCTTGCACGGACGTGGGCACGAGGCCTG
TCCGTCTACGCCACACGCGGCGATCATTCGCCTTGGATGTACCCTTTCAA
ACTTCCGAAGCATGCAGAATGCAGCATCTATTTAATTAAGTGCTTCTCAC
CATAATCAAGGGTCGGCACCGGCTCCGATACTGTATGTGACTATATCGCA
CATATTATGTCCATTGTACCAATCGTAATAGAGGGTGTGGGAAAAGAGAG
GCGTATAATAGTTGGTATATGGGGTTACCTGAATAGGCTTGCACCCGTTT
TTCAAGCTACCTTGAGGACTGCTGGCTTAGTGCCGGTGGATTCTCGGTGG
TAAACGCCATCGGTACGAAATTACGTGACCTGATGAAATCGGGATTGGCC
CGATGGCGGTTGACGGTAGAGATGGACACCGTCGCGGAAAACGAAAGGAT
CACGGGAGTATGCACCAGATTCAGCCTGGGTTGAGAGAATGAGCAGGCTG
ACGCGGGACGGGACCGCTGTACTTGTCTCGCGAGACCAAACTCTCAGGCG
CAAACGGGGACATTTTCCCTGTTCAGCTAGCTGACCACGAGCAGGAGGCA
ACCATATCCGATTGATCTTACTCTGATATATGTGATGAACACA
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Coding sequence (CDS) from alignment at H-elongata_contig14623:531..4523+

>mRNA_H-elongata_contig14623.3150.1 ID=mRNA_H-elongata_contig14623.3150.1|Name=mRNA_H-elongata_contig14623.3150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig14623:531..4523+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCAGATCGCCTGGGTGAAGTCCAAACCCTCTCACGCGGCGTGCTA
CGAGGTGTTCGACGCGAAGGACCCGTCTAGCCTCTGGACGGGAGTGATCG
CTGTGATCCTTGTCGTTGCTGTGGTAGTTGATGGAGCAGATCGCCTGGGT
GAAGTCCAAACCCTCTCACGCGGCGTGCTACGAGGTGTTCGACGCGAAGG
ACCCGTCTAGCCTCTGGACGGGAGTGATCGCTGTGATCCTTGTCGTTGCT
GTGGTAGTTGTGTACGCGGTATTGTGCACCCAGCGCGACAGATTGACATC
GCAATACGAGAGAAGCGACGTCGAATTCACGGGGCCGGACGTCGAGGAAG
ACGCCGGTCAGGAGGCGACGGAGACGGTCGGAATGCCTCTGCCTTTGCCT
CTGCCCCCGCCCCTGCCCACATCCTTCCGCCCCCCGCCTGCCCGGCGCGC
TTCCGTGGTCAACCCCATATTTGCCGGCTCTGGATCACGCATCAAACAAA
AGTGGCATAAAAGTAGCGGTGACCCGATTGGCCCTACCTGCGACAACCGC
ACCTCCCTGACGTCCAATGACTCCGATATGTCTCCGGCCGAGGACCTGGA
GGCGAGGTGGTCGGCGGACGCGGAACCTCCATCAGAGAACAGTTATGTAA
ATAGCACGAATGGCCCCTCTCTTGCGCTTGCTTCCACGGCAAATGGCGCC
AGGGGCAGGCGAGTGGAGTGGGGAGCAACGGGTGGAGGGCCTTTGGTGGC
GCACCCTTCGACTCAGGCTGCGTATAGCGGCGCGGCGGCGTGGGTACGAC
CGAGCAACAGCGACGCAACACCGACCGCGCGAGGCCAACGAGGGGTGCTG
AGACGACCCCCTTCTCGCAGTCTGTCCACGTCGTCGAACTCGAGATGGCC
CGGATGATGTACGCGGTATTGTGCACCCAGCGCGACAGATTGACATCGCA
ATACGAGAGAAGCGACGTCGAATTCACGGGGCCGGACGTCGAGGAAGACG
CCGGTCAGGAGGCGACGGAGACGGTCGGAATGCCTCTGCCTTTGCCTCTG
CCCCCGCCCCTGCCCACATCCTTCCGCCCCCCGCCTGCCCGGCGCGCTTC
CGTGGTCAACCCCATATTTGCCGGCTCTGGATCACGCATCAAACAAAAGT
GGCATAAAAGTAGCGGTGACCCGATTGGCCCTACCTGCGACAACCGCACC
TCCCTGACGTCCAATGACTCCGATATGTCTCCGGCCGAGGACCTGGAGGC
GAGGTGGTCGGCGGACGCGGAACCTCCATCAGAGAACAGTTATGTAAATA
GCACGAATGGCCCCTCTCTTGCGCTTGCTTCCACGGCAAATGGCGCCAGG
GGCAGGCGAGTGGAGTGGGGAGCAACGGGTGGAGGGCCTTTGGTGGCGCA
CCCTTCGACTCAGGCTGCGTATAGCGGCGCGGCGGCGTGGGTACGACCGA
GCAACAGCGACGCAACACCGACCGCGCGAGGCCAACGAGGGGTGCTGAGA
CGACCCCCTTCTCGCAGTCTGTCCACGTCGTCGAACTCGAGATGGCCCGG
ATGA
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