mRNA_H-elongata_contig14617.3147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14617.3147.1
Unique NamemRNA_H-elongata_contig14617.3147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig14617.3147.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.110e-15
Identity = 54/120 (45.00%), Postives = 66/120 (55.00%), Query Frame = 3 
Query:    3 GIRWSNGANYNKVRRNTIYHDNDGDDDEGYAVYMYKGSDEQEADGNEDGTIRNTKFHRNVVYSARAEAVKIQDAHDNSFRRNEITGGEYASFTDSTNNRWTEATVPDD-FYFDVDNNSCF 359
            G+RWSNGAN N V  NT+   +  DDD  YA+Y+Y+G+DE EADGN DG  R+ K + N +YS +  A    DA D             A F DSTNN   + T  D  F F V  NSCF
Sbjct:  393 GVRWSNGANRNNVYSNTMTVGSGDDDD--YAIYLYRGNDEPEADGNPDGHPRDNKIYDNNIYSGKEVAWLTTDADDXXXXXXXXXXXSKAIFEDSTNNLVRDNTFTDSSFEFSV-TNSCF 509
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BLAST of mRNA_H-elongata_contig14617.3147.1 vs. uniprot
Match: D7FWK3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 5.450e-10
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3 
Query:    3 GIRWSNGANYNKVRRNTIYHDNDGDDDEGYAVYMYKGSDEQEADGNEDGTIRNTKFHRNVVYSARAEAVKIQDAHDNSF 239
            G+RWSNGAN N+V  N I  + D   D  +A+YM+KG+D QEA+GNEDG IR+   ++N ++S +    K  +A DN F
Sbjct:  358 GVRWSNGANGNRVWMNDIVVEADQGAD--FALYMFKGTDPQEAEGNEDGRIRDNSVYKNEIWSDQDLVWKATEAEDNVF 434
[Close]
BLAST of mRNA_H-elongata_contig14617.3147.1 vs. uniprot
Match: A0A6H5JYM5_9PHAE (MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.700e-7
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3 
Query:    3 GIRWSNGANYNKVRRNTIYHDNDGDDDEGYAVYM----------YKGSDEQEADGNEDGTIRNTKFHRNVVYSARAEAVKIQDAHDNSF 239
            G+RWSNGAN N+V +N I  + D   D  +A YM           KG+D QEA+GNEDG IR+   +RN ++S +    K  +A DN F
Sbjct:  386 GVRWSNGANNNRVWKNDIVVEADQGGD--FAFYMCEFAQTDGETVKGTDPQEAEGNEDGRIRDNSVYRNNIWSDQDMVWKATEAEDNVF 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14617.3147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JUS5_9PHAE5.110e-1545.00MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FWK3_ECTSI5.450e-1046.84Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JYM5_9PHAE1.700e-742.70MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14617contigH-elongata_contig14617:5388..7225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size726
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14617.3147.1prot_H-elongata_contig14617.3147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14617 5489..6891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.2991662-UTR-H-elongata_contig14617:5387..54881622929869.2991662-UTR-H-elongata_contig14617:5387..5488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14617 5388..5488 +
1691679188.97473-UTR-H-elongata_contig14617:5387..54881691679188.97473-UTR-H-elongata_contig14617:5387..5488Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14617 5388..5488 +
1622929869.3566828-UTR-H-elongata_contig14617:6891..72251622929869.3566828-UTR-H-elongata_contig14617:6891..7225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14617 6892..7225 +
1691679189.0265539-UTR-H-elongata_contig14617:6891..72251691679189.0265539-UTR-H-elongata_contig14617:6891..7225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14617 6892..7225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.3189619-CDS-H-elongata_contig14617:5488..54921622929869.3189619-CDS-H-elongata_contig14617:5488..5492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 5489..5492 +
1691679188.986043-CDS-H-elongata_contig14617:5488..54921691679188.986043-CDS-H-elongata_contig14617:5488..5492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 5489..5492 +
1622929869.3339343-CDS-H-elongata_contig14617:5817..59541622929869.3339343-CDS-H-elongata_contig14617:5817..5954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 5818..5954 +
1691679189.0027113-CDS-H-elongata_contig14617:5817..59541691679189.0027113-CDS-H-elongata_contig14617:5817..5954Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 5818..5954 +
1622929869.3448336-CDS-H-elongata_contig14617:6741..68911622929869.3448336-CDS-H-elongata_contig14617:6741..6891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 6742..6891 +
1691679189.0168977-CDS-H-elongata_contig14617:6741..68911691679189.0168977-CDS-H-elongata_contig14617:6741..6891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 6742..6891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14617.3147.1

>prot_H-elongata_contig14617.3147.1 ID=prot_H-elongata_contig14617.3147.1|Name=mRNA_H-elongata_contig14617.3147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
MYKGSDEQEADGNEDGTIRNTKFHRNVVYSARAEAVKIQDAHDNSFRRNE
ITGGEYASFTDSTNNRWTEATVPDDFYFDVDNNSCFGINDVGLEEC*
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mRNA from alignment at H-elongata_contig14617:5388..7225+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14617.3147.1 ID=mRNA_H-elongata_contig14617.3147.1|Name=mRNA_H-elongata_contig14617.3147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1838bp|location=Sequence derived from alignment at H-elongata_contig14617:5388..7225+ (Himanthalia elongata Himel1 dioecious)
AGGGCATTCGTTGGTCCAACGGAGCCAACTATAACAAAGTGCGGAGGAAT
ACAATATACCATGACAACGATGGAGACGATGACGAAGGGTACGCGGTCTA
CATGTGTGAGTTTCATTCCTTCTATTTACTCTCTGATTTATGCGCTCTGA
TTGACAGTTCATCGTCTCGAATGTGCGGAAAAACAACACCAGAAGAAGGT
TTGGTGAACGGCAGCGTGGACAACAAAACAAGCGACAACGCTCAGATCAT
GTTCATTGGCAAGGTTGTGCGGTGTTTTCCTTGCTCCTGCTGGTGATCCT
TATTATTAGTGAACGGTCACGCTCGGACCGTTTCACCCATCAAGAGAACT
GTAGCTTGTTATAGCACGAAAACGTCTAGTAAGTGGCCACTATTTTTCTC
GCTATCCCGTCGTCTCAATTTTCCCTACAGATAAGGGTAGTGACGAGCAA
GAAGCCGATGGCAACGAAGACGGAACAATTCGCAACACCAAATTCCATAG
GAACGTCGTGTATTCTGCAAGGGCCGAAGCAGTGAAGATACAGGATGCAC
ACGATAACTCGTTTCGCGTGAGTAGAAGCCCGACTCTCATTCCCAGTCTT
CTGTCCCCCGCCTCCCACTCTTTCGTGATGCATATACATTAGCGTGATAT
TTGCCTGGATAGGCAGTACCATAGCACCTAAGCCAAACGCTACTTCTGGC
ATATTGAAACGTATGTGATTATGGAATAATCTAACAAGCTCAAGTACTGG
TCTCGTGAACCTCGAGTACTTCTCTGCCGCGACTGGTTCGTCCGACGTTC
AGCGACCCGCATAGAACCACCTTGTAGTATGTGCTCGGCTGATCTCTCGT
TGCAAAATTAAGAGGCGTCCAGCGCAAGACCCCGTAGCGGTCGAAGGAGA
ATAATAGGAATGCTAATACTCAGCCCTGGACTATAAGGCTTTACTTAGTG
GTTATTACTTTTACTAAAAGAGAGAACTAGTGGCGAACATTCGGCGACTT
GCTCTGACCAATCGCGATGGCTTCACCTTTGAAAGAGCTGCTATGGTAAC
ATAGCTCTAAGTCGTTGTTGTGAAAGCCATCAATGTATTCTCTCCTTGAC
GCAAAACATAAAGCTCAAGACTATATAATCACCCTTCGCGAATGAAAGGG
GAAACCACGCAAGGCCGGACGCATTCTCCTTACTTCCGCGCCCACCATGT
TTGACTCAAAACCTGGCTTATTAATCGTATGACTGACACTATTACTGGTG
ATGTCCGTACTACCGAACGATTGTTAAACTTTTCCCTGCACATCTCCCCG
TATTGCCGGGTGTTTTCGTCAATTACCCGTTCGTGTTGTTGTGGCAAATA
ACAGCGCAACGAAATAACGGGAGGTGAATACGCCTCTTTCACAGACTCCA
CTAACAACAGATGGACGGAGGCTACGGTGCCCGATGACTTCTACTTTGAT
GTGGACAATAATTCTTGCTTCGGGATCAACGATGTGGGCTTAGAAGAGTG
CTAATTACTTTGTATTATAAACGCACGCGGAGTGATGGAAGCTCTTCTCC
ATTAACAACGGTGACCTGGGAGTCATTGCGGCGGATGATTATGACGGTTT
TGCGGTGGAAAGGCAATAATTATGCTGTAACGGTTTGGCTGTATCAACAT
TGTGGTCTTAGAAGTGTCGTAGAGAGGGAGTCTGGTAACCTCTCGGTGCC
GTCACAAGAAGTACTATTTATTTATTTGTGTTTGGGTGTGGGTGTGGGTG
TGGTCATCACTATAACAGAGTAAGGATCAATCGGATTTGGTTGCCTTCTG
CTTGGGGTCAGTTGAACAGAGAAAATATATATTTCCCC
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Coding sequence (CDS) from alignment at H-elongata_contig14617:5388..7225+

>mRNA_H-elongata_contig14617.3147.1 ID=mRNA_H-elongata_contig14617.3147.1|Name=mRNA_H-elongata_contig14617.3147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig14617:5388..7225+ (Himanthalia elongata Himel1 dioecious)
ATGTATGTATAAGGGTAGTGACGAGCAAGAAGCCGATGGCAACGAAGACG
GAACAATTCGCAACACCAAATTCCATAGGAACGTCGTGTATTCTGCAAGG
GCCGAAGCAGTGAAGATACAGGATGCACACGATAACTCGTTTCGCATAAG
GGTAGTGACGAGCAAGAAGCCGATGGCAACGAAGACGGAACAATTCGCAA
CACCAAATTCCATAGGAACGTCGTGTATTCTGCAAGGGCCGAAGCAGTGA
AGATACAGGATGCACACGATAACTCGTTTCGCCGCAACGAAATAACGGGA
GGTGAATACGCCTCTTTCACAGACTCCACTAACAACAGATGGACGGAGGC
TACGGTGCCCGATGACTTCTACTTTGATGTGGACAATAATTCTTGCTTCG
GGATCAACGATGTGGGCTTAGAAGAGTGCTAACGCAACGAAATAACGGGA
GGTGAATACGCCTCTTTCACAGACTCCACTAACAACAGATGGACGGAGGC
TACGGTGCCCGATGACTTCTACTTTGATGTGGACAATAATTCTTGCTTCG
GGATCAACGATGTGGGCTTAGAAGAGTGCTAA
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