mRNA_H-elongata_contig14617.3146.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14617.3146.1
Unique NamemRNA_H-elongata_contig14617.3146.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A0A6H5JUS5_9PHAE (MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS5_9PHAE)

HSP 1 Score: 380 bits (976), Expect = 8.970e-125
Identity = 185/255 (72.55%), Postives = 213/255 (83.53%), Query Frame = 1
Query:    1 NAIVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFD----YAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
            N I +++TG YYL S+IHIRNGATLEIDG   G+  C TLL+A +  ITG+DSLNIRAHGGNLV+RDTKIFSWDI  GTYDTN  +GR Y+SAITEFITGR+ DLC  D   G DGYSTG+AK+ MGVARMDIYDSEL YLG+  SESYGI YKARGLCKTL NVDIFDDDQDF     YAVYGDI  S++H+N+FGHYSYGHQGG+W +N V+DN+GYGFDPHDDSDHL I+GN+V+ NG+HGIIASKRCTD+T
Sbjct:   82 NVISETYTGVYYLDSNIHIRNGATLEIDGT--GALACETLLMAGNDDITGSDSLNIRAHGGNLVVRDTKIFSWDITTGTYDTNTGNGRPYLSAITEFITGRDEDLCPSDTQAGEDGYSTGQAKEQMGVARMDIYDSELAYLGYSESESYGISYKARGLCKTLENVDIFDDDQDFPVYGAYAVYGDIYRSKIHNNWFGHYSYGHQGGKWIDNDVYDNVGYGFDPHDDSDHLEIRGNKVWGNGYHGIIASKRCTDIT 334          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A0A6H5JYM5_9PHAE (MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYM5_9PHAE)

HSP 1 Score: 290 bits (742), Expect = 1.800e-92
Identity = 147/238 (61.76%), Postives = 172/238 (72.27%), Query Frame = 1
Query:   13 DSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGII 726
            D++TGTYYL S + I NGATL IDG       C TLLLAS+S+        I AHGGNL IR TKIFSWD++   YDT+  DGR+Y+SA+TE ITGR  D C DD        S G+AK+DMG A MDI+ SE+GYLG+  SE+YGI YKARGLCK  +N+DIFDDD   +  V GDI +S+LHHN+FGHYS+GH GG+W  N VHDN GYGFDPHDDSD L I GNEVYNNGWHGII
Sbjct:   96 DTYTGTYYLESDVFITNGATLSIDGSESEENECETLLLASNSSTFN----RITAHGGNLDIRYTKIFSWDLKNEDYDTDPSDGRSYLSAVTEKITGRTKDTCPDDSSS-----SNGQAKEDMGNANMDIHRSEIGYLGYDGSEAYGISYKARGLCKDNSNLDIFDDDNGLNVGVTGDIYDSDLHHNWFGHYSWGHDGGKWQYNTVHDNYGYGFDPHDDSDKLKIVGNEVYNNGWHGII 324          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FWK3_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK3_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.930e-91
Identity = 146/237 (61.60%), Postives = 168/237 (70.89%), Query Frame = 1
Query:   13 DSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGI 723
            D++TGTYYL S + I NGATL IDG       C +LLLAS+S+        I AHGGNL IR TKIFSWD+E   YDT   DGR+Y+SA+TE ITGR  D C DD        S G+AK DMG A MDI+ SE+GYLG+  SE+YGI YKARGLCK  +N+DIFDDD   +  V GDI  S+LHHN+FGHYS+GH GG+W  N VHDN GYGFDPHDDSD L I GNEVYNNGWHGI
Sbjct:  129 DTYTGTYYLESDVFITNGATLSIDGSESEKNECESLLLASNSSTFN----RITAHGGNLDIRYTKIFSWDLENEDYDTEPSDGRSYLSAVTEKITGRTKDTCPDDSSS-----SNGQAKKDMGNANMDIHRSEIGYLGYDGSEAYGISYKARGLCKDHSNLDIFDDDNGLNVGVTGDIYRSDLHHNWFGHYSWGHDGGKWQYNTVHDNYGYGFDPHDDSDKLRIIGNEVYNNGWHGI 356          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 2.750e-69
Identity = 120/246 (48.78%), Postives = 157/246 (63.82%), Query Frame = 1
Query:   16 SWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
            S TGT+ LT  +++ +G TLE+ G   G       LL+++ T      +N+RAHGG+L    TK+FSWD    + D +  DGR+YISAI+E IT  E + C             G AK+ MG ARMDI  SE+GYLG++ SESYG+ +K RG C+  +N ++FDD       VYG++ +S++HH  FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVYNNG+HGIIASKRC  V+
Sbjct:   98 SATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETF-----INLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITD-EDETCE------------GNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDD-----VNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 320          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 5.750e-69
Identity = 120/249 (48.19%), Postives = 159/249 (63.86%), Query Frame = 1
Query:    7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
            I DS TGT+ LT  + + +G TL++ G   G       LL++  T      +N+RAHGG+L    TK+F+WD      D + +DGR+Y+SA++E IT  +   CN            G AK++MG ARMDI DSE+GYLG++ SESYG+ +K RG C   +N D+F+D       VYG+I +S++HHN FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVY+NG+HGIIASKRC  V+
Sbjct:   92 ISDSATGTWLLTEELFVEDGITLKVHGTSAGGDADELRLLSTSDTF-----INLRAHGGSLDFLSTKVFAWDTSINGPDRDEEDGRSYVSAVSEVITD-DSQTCN------------GRAKNNMGEARMDIEDSEMGYLGYHGSESYGLTWKVRGFCVDKSNHDLFED-----VNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVS 317          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.550e-67
Identity = 119/246 (48.37%), Postives = 157/246 (63.82%), Query Frame = 1
Query:   16 SWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
            S TGT+ LT  +++ +G TL++ G   G       LL+++ T      +N+RAHGG+L    TK+FSWD    + D +  DGR+YISAI+E IT  E + C             G AK+ MG ARMDI  SE+GYLG++ SESYG+ +K RG C+  +N ++FDD       VYG++ +S++HH  FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVYNNG+HGIIASKRC  V+
Sbjct:   98 SATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETF-----INLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITD-EDETCE------------GNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDD-----VNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 320          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 2.740e-67
Identity = 117/243 (48.15%), Postives = 152/243 (62.55%), Query Frame = 1
Query:   22 TGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDV 750
            TG + LT+ + +  GATL   G+ +G G C  L + S S   G+D   IR HGGNL   DT + SWD++         DGR++I  ++E +TG +    N+                 MG  RMDI DSE+GYLG+ ASE+YGI +K RG C  L+N D+FDD       VYGD+  S++HH Y+G YS+GHQGG WTNN++HDN  YGFDPHDDSD+L+I GN+VYNN  HGIIASKRC +V
Sbjct:   50 TGKWLLTADLFVTGGATLYCRGKGVG-GNCAELRIRSTS---GSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTCAINN-----------------MGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDD-----VNVYGDMKGSDIHHMYYGMYSFGHQGGVWTNNLMHDNHQYGFDPHDDSDYLIIAGNKVYNNVNHGIIASKRCNNV 266          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 5.180e-66
Identity = 118/249 (47.39%), Postives = 158/249 (63.45%), Query Frame = 1
Query:    7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDVT 753
            + ++ TGT+ LT  +++ +G TL++ G   G       LL++  T      +N+RAHGG+L    TK+FSWD    + D +  DGR+YISA++E +T  E + C             G AK+ MG ARMDI +SE+GYLG+  SESYG+ +K RG CK  +N +IFDD       VYG++ +S++HH  FG Y+YGHQ G W  N +HDN GYGFDPHDDSD L I  NEVYNNG+HGIIASKRC  V+
Sbjct:   99 VSETETGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSETY-----INLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTD-EDETCE------------GNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDD-----VNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVS 324          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: D7FZF8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF8_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.050e-65
Identity = 119/231 (51.52%), Postives = 152/231 (65.80%), Query Frame = 1
Query:    7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEV 699
            I D+ TG++YL S ++I  G+ L + G   G G C  LLLAS         +N+RAHGG L++  T + SWD+ AGT D N +DGR+Y+SAI+E IT    + C+            G AK+DMG ARMDI DSE+ +LGWY SESYGI YK RG CK L+N ++FD       +V GDI  S++H NYFGHYSYGHQGG W++N +H NIGYGFDPHDDSD++ I  NEV
Sbjct:  111 ISDTVTGSWYLESTLYITEGSRLVVQGLSKG-GDCDHLLLASSPE----KFINLRAHGGELMLDGTHVESWDLAAGTVDENNEDGRSYLSAISEVITD-PAETCD------------GTAKNDMGEARMDIIDSEVNHLGWYDSESYGIAYKVRGFCKDLSNPELFDS-----VSVTGDILGSDIHDNYFGHYSYGHQGGNWSHNKMHHNIGYGFDPHDDSDYITIHNNEV 318          
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 220 bits (561), Expect = 2.980e-65
Identity = 119/245 (48.57%), Postives = 156/245 (63.67%), Query Frame = 1
Query:    7 IVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITGTDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITGREVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYGIVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQGGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRC 741
            +  S TGT+ LT  +++ +G TL++ G+  G G    L L S    T  D +N+RAHGG+L    TK+F+WD       T+   GR+YISA++E IT         D  +  DG     AK +MG ARMDI DSE+ YLG++ SESYG+ +K RGLC+ L+N+++FD        VYG+I +S++HHNYFG Y+YGH+ G W  N +H N  YGFDPHDDSD L I  NEVYNNG HGIIASKRC
Sbjct:   92 VSSSITGTWLLTESLYVEDGITLQVHGKSAG-GKADELRLLS----TSKDFINLRAHGGSLDFVSTKVFAWDTSKNKVRTDDSKGRSYISAVSEVIT---------DSKQKCDG----RAKKNMGEARMDIEDSEMAYLGYFGSESYGLTWKVRGLCRDLSNLEVFDA-----VNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRC 313          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14617.3146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUS5_9PHAE8.970e-12572.55MEP12 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JYM5_9PHAE1.800e-9261.76MEP15 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FWK3_ECTSI1.930e-9161.60Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI2.750e-6948.78Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAJ7_9PHAE5.750e-6948.19Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
D7G339_ECTSI1.550e-6748.37Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI2.740e-6748.15Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI5.180e-6647.39Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FZF8_ECTSI2.050e-6551.52Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A8CEP1_SACJA2.980e-6548.57Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14617contigH-elongata_contig14617:1704..4592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue4.2e-51
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons8
Model size802
Cds size801
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14617.3146.1prot_H-elongata_contig14617.3146.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14617 1704..4592 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929869.0582564-CDS-H-elongata_contig14617:1703..18291622929869.0582564-CDS-H-elongata_contig14617:1703..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 1704..1829 +
1691679188.8608775-CDS-H-elongata_contig14617:1703..18291691679188.8608775-CDS-H-elongata_contig14617:1703..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 1704..1829 +
1622929869.0767639-CDS-H-elongata_contig14617:2293..24331622929869.0767639-CDS-H-elongata_contig14617:2293..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 2294..2433 +
1691679188.8819-CDS-H-elongata_contig14617:2293..24331691679188.8819-CDS-H-elongata_contig14617:2293..2433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 2294..2433 +
1622929869.097057-CDS-H-elongata_contig14617:2649..28011622929869.097057-CDS-H-elongata_contig14617:2649..2801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 2650..2801 +
1691679188.8951924-CDS-H-elongata_contig14617:2649..28011691679188.8951924-CDS-H-elongata_contig14617:2649..2801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 2650..2801 +
1622929869.1104798-CDS-H-elongata_contig14617:3000..31521622929869.1104798-CDS-H-elongata_contig14617:3000..3152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 3001..3152 +
1691679188.9039505-CDS-H-elongata_contig14617:3000..31521691679188.9039505-CDS-H-elongata_contig14617:3000..3152Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 3001..3152 +
1622929869.1254108-CDS-H-elongata_contig14617:3450..35761622929869.1254108-CDS-H-elongata_contig14617:3450..3576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 3451..3576 +
1691679188.9131632-CDS-H-elongata_contig14617:3450..35761691679188.9131632-CDS-H-elongata_contig14617:3450..3576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 3451..3576 +
1622929869.1400273-CDS-H-elongata_contig14617:3873..39011622929869.1400273-CDS-H-elongata_contig14617:3873..3901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 3874..3901 +
1691679188.9325922-CDS-H-elongata_contig14617:3873..39011691679188.9325922-CDS-H-elongata_contig14617:3873..3901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 3874..3901 +
1622929869.1533859-CDS-H-elongata_contig14617:4343..43871622929869.1533859-CDS-H-elongata_contig14617:4343..4387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 4344..4387 +
1691679188.9490576-CDS-H-elongata_contig14617:4343..43871691679188.9490576-CDS-H-elongata_contig14617:4343..4387Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 4344..4387 +
1622929869.1682284-CDS-H-elongata_contig14617:4559..45921622929869.1682284-CDS-H-elongata_contig14617:4559..4592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 4560..4592 +
1691679188.9600813-CDS-H-elongata_contig14617:4559..45921691679188.9600813-CDS-H-elongata_contig14617:4559..4592Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14617 4560..4592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14617.3146.1

>prot_H-elongata_contig14617.3146.1 ID=prot_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=267bp
NAIVDSWTGTYYLTSHIHIRNGATLEIDGEHLGSGPCTTLLLASDSTITG
TDSLNIRAHGGNLVIRDTKIFSWDIEAGTYDTNVDDGRAYISAITEFITG
REVDLCNDDDLKGTDGYSTGEAKDDMGVARMDIYDSELGYLGWYASESYG
IVYKARGLCKTLNNVDIFDDDQDFDYAVYGDIDNSELHHNYFGHYSYGHQ
GGQWTNNVVHDNIGYGFDPHDDSDHLLIQGNEVYNNGWHGIIASKRCTDV
TIKKNKVWNNGRNGKL*
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mRNA from alignment at H-elongata_contig14617:1704..4592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14617.3146.1 ID=mRNA_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2889bp|location=Sequence derived from alignment at H-elongata_contig14617:1704..4592+ (Himanthalia elongata Himel1 dioecious)
AACGCAATTGTTGACTCCTGGACTGGCACTTACTACTTAACGTCCCATAT ACACATCAGAAACGGGGCTACCCTGGAGATCGACGGCGAGCATCTGGGAT CCGGCCCCTGTACAACTCTTCTCTTGGTAAGAAATGTGACTTCTACTTCG CTGTGGTTTGTCAAGATGTAGCAGGTTGTGGGGGGGGGGGATACTTCCAA ACTTCTCACCTAAATTGTTCCTCTCCAGGGACATTAAAGCTCGGATGAAT TGTGCAATTTAGTGGGCCATGTGATGAGTTAGTCGAGGTCACTAGCTCAA CCGTAGTCTGATCTGTTCCTCACCCTTATTATCTAAACGGGGCATGCATA AGAAAAGGGGGAGTACTTCACCAACAATCTAAGGGGAGCTTCTTTACTTG ATGTACGGTAGCATTAGGCGAAGATCATAATATATCCCCCTAGGTCACCT TGCTTGCACGACGGCCGTTCGCCCTCCCGATATTTTGCCGTTTGCTCGCG TAGCCTGCGGTTAAGTATAACACCGATATCCCTCGTACCATGTTTTCCGG TGTCTTATATTGATTCACCTGGTCTGCATCGTCTATTTAGGCAAGTGACT CTACAATTACCGGGACTGACTCTCTCAACATTCGCGCTCACGGAGGCAAC CTCGTGATCAGGGACACCAAGATTTTCTCTTGGGACATAGAAGCCGGCAC GTACGACACAAATGTGGACGATGGCCGAGCGTAAGTGCTTTGTGATTGTT GGAAACACATACTACCTTCTCTCGATCGTGTTTGACCAAAACGACTGCTC AGTAGGATATTCAGCGAGAAAAACAGTCACAAAAACCAGTACATTTAGAG CTATATAGATATCTTCCGGTATTCCGCTATTCTTTTGTTATGGTCCCCCG CACCCGCCCTTGCACGGCGTACTTCAACGTGTGTTGTTTCTAACAGGTAC ATCAGCGCAATCACGGAGTTCATCACTGGCCGCGAGGTCGACCTCTGCAA CGACGATGACCTCAAGGGTACTGACGGATACAGCACTGGGGAAGCTAAGG ACGACATGGGCGTAGCCAGAATGGACATCTACGACTCCGAGCTTGGATGT GAGAAATATTTGACTATGGGTACAACGTCGATTTGATGTATCCACAATAT CTGAACCCCCGGGAGCAATAGTTTTAAGAGACAAACACCAGTGAAGAAAA TGATGAAAAATGCTACTATCGTTTCCCACGCTGCTCTGAAGCTCTTTTTC TCTCTGTCCCCCTTGCTGCATGACGCATGTCTGACTATTTTTTGCAGATC TGGGATGGTACGCAAGCGAATCCTACGGTATTGTCTATAAAGCACGTGGG CTTTGCAAGACGCTCAACAACGTTGACATCTTCGACGACGATCAGGATTT TGACTATGCTGTCTACGGTGATATCGACAACTCTGAGCTCCACCACAACG TAAGGGATCAATGCGCGTACGACTTCATAAAACCAAGGAATACCCCCTTT CATTGGCATCTCGCGAATGAGAACGCACACCAACAAACTCCAGACGAAAA TTCGGCTAAGGTGTACAGTTATAGTACATCGTTGCTCCCGAATACTACTG TTCTGCGCACAGTTGGTAGAATCAGTATGTATGGTCGCCTTGGAACATGA TGGAGAAAGCGCCACGTCATTGCGATGGGTCTGATCGCACAAGAAAACTT GTGCCCTCCGCCATAAAAACATGACGTAACACCCGTTCCCGGCGCAGTAC TTCGGACATTACTCTTACGGTCACCAGGGCGGTCAGTGGACCAACAACGT GGTGCACGACAACATCGGCTATGGCTTCGACCCTCATGACGACAGCGACC ACCTACTAATTCAGGGTAACGAGGTAAATTTCAATTTTGCGAGAGGTGTG ATCACGCGCTGGTCGTCTGCTACATGTACTATTCTGTACGTTCTATAATA GTTTTCTGGTGGATATTGCAATGCTCCTGTCGGATTACTACGCCAATTCA AGATATAGGGTAGTTCTTTCGTTTCTCGTGGGGTATTTCGATCTAATATT TAATCTCCTTTTCCTCCCGCCATTGATTTTTGTGTTTTCGTTTGACTCAA TTTGTTGTCGCTTTATTGGCGAATGGACGCATTCGAAACTTATGGCGATG TAATTTCGTGGGTTCTCAAGGTATACAACAACGGCTGGCATGGAATCAGT AAGTGCCCAAAGGTGTTTTCTTCGTCGGCGCTTTACACTTAGCATACATA CATGTAACACTCTCAGAAGCGCTTCTCTTTTTCTTATGAGTGGCGCGACC CGATTCCCCTTTTCCACTCCACAACCACCCGAGCATGAACATCACTAAGA CGGTGGTGCGCCCGTATCAAACTCTATATCGGTGCGTCATTTGGGACAGG TAGCTGAAGCTCAATCGCTACAATACATGACTACCGAGGTATACCGAGCG AGGACAATGTCAAGGGTTCCCGCCTTTAACTCTATCGACCTACAGTTGAC ACACCTTTCCGTTGCTGCGTGTTTGATTGACCACCCACTCGCCTTTGTGG TCACCATGTCGTGTTTTCTGTACGTATGTGGGACGACCAAACATTCTTGG CTGGCCTGCGGGACGTTTTGGTTCGCGCGAATACCACCAGTCGCATCAAA GCGATGCACTGACGTTACCATCAAGAAGAACAAGGTAAAATTATTATGTT TCAGTGGCGCCGGTTTATTGTGAGTAGAGTGGGCGGCGGCGCAAATCAGC TTGTTGTTTGGGTTGTGTCTCTTTAAGACTATCCCCAAGAAGCCGGATGC ACGATGTCGCTGATCGCGCCCTTCCCTATCCCCCTTCCCTTGTTTGTTTC CGTAAGGTGTGGAACAACGGGCGAAACGGTAAGTTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig14617:1704..4592+

>mRNA_H-elongata_contig14617.3146.1 ID=mRNA_H-elongata_contig14617.3146.1|Name=mRNA_H-elongata_contig14617.3146.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1602bp|location=Sequence derived from alignment at H-elongata_contig14617:1704..4592+ (Himanthalia elongata Himel1 dioecious)
AACGCAATTGTTGACTCCTGGACTGGCACTTACTACTTAACGTCCCATAT
ACACATCAGAAACGGGGCTACCCTGGAGATCGACGGCGAGCATCTGGGAT
CCGGCCCCTGTACAACTCTTCTCTTGAACGCAATTGTTGACTCCTGGACT
GGCACTTACTACTTAACGTCCCATATACACATCAGAAACGGGGCTACCCT
GGAGATCGACGGCGAGCATCTGGGATCCGGCCCCTGTACAACTCTTCTCT
TGGCAAGTGACTCTACAATTACCGGGACTGACTCTCTCAACATTCGCGCT
CACGGAGGCAACCTCGTGATCAGGGACACCAAGATTTTCTCTTGGGACAT
AGAAGCCGGCACGTACGACACAAATGTGGACGATGGCCGAGCGCAAGTGA
CTCTACAATTACCGGGACTGACTCTCTCAACATTCGCGCTCACGGAGGCA
ACCTCGTGATCAGGGACACCAAGATTTTCTCTTGGGACATAGAAGCCGGC
ACGTACGACACAAATGTGGACGATGGCCGAGCGTACATCAGCGCAATCAC
GGAGTTCATCACTGGCCGCGAGGTCGACCTCTGCAACGACGATGACCTCA
AGGGTACTGACGGATACAGCACTGGGGAAGCTAAGGACGACATGGGCGTA
GCCAGAATGGACATCTACGACTCCGAGCTTGGATGTACATCAGCGCAATC
ACGGAGTTCATCACTGGCCGCGAGGTCGACCTCTGCAACGACGATGACCT
CAAGGGTACTGACGGATACAGCACTGGGGAAGCTAAGGACGACATGGGCG
TAGCCAGAATGGACATCTACGACTCCGAGCTTGGATATCTGGGATGGTAC
GCAAGCGAATCCTACGGTATTGTCTATAAAGCACGTGGGCTTTGCAAGAC
GCTCAACAACGTTGACATCTTCGACGACGATCAGGATTTTGACTATGCTG
TCTACGGTGATATCGACAACTCTGAGCTCCACCACAACATCTGGGATGGT
ACGCAAGCGAATCCTACGGTATTGTCTATAAAGCACGTGGGCTTTGCAAG
ACGCTCAACAACGTTGACATCTTCGACGACGATCAGGATTTTGACTATGC
TGTCTACGGTGATATCGACAACTCTGAGCTCCACCACAACTACTTCGGAC
ATTACTCTTACGGTCACCAGGGCGGTCAGTGGACCAACAACGTGGTGCAC
GACAACATCGGCTATGGCTTCGACCCTCATGACGACAGCGACCACCTACT
AATTCAGGGTAACGAGTACTTCGGACATTACTCTTACGGTCACCAGGGCG
GTCAGTGGACCAACAACGTGGTGCACGACAACATCGGCTATGGCTTCGAC
CCTCATGACGACAGCGACCACCTACTAATTCAGGGTAACGAGGTATACAA
CAACGGCTGGCATGGAATCAGTATACAACAACGGCTGGCATGGAATCATC
GCATCAAAGCGATGCACTGACGTTACCATCAAGAAGAACAAGTCGCATCA
AAGCGATGCACTGACGTTACCATCAAGAAGAACAAGGTGTGGAACAACGG
GCGAAACGGTAAGTTGTAAGTGTGGAACAACGGGCGAAACGGTAAGTTGT
AA
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