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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 1227 |
| Cds size | 1116 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929868.7863991-UTR-H-elongata_contig14607:5204..5231 | 1622929868.7863991-UTR-H-elongata_contig14607:5204..5231 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14607 5205..5231 + |
| 1691679188.7184942-UTR-H-elongata_contig14607:5204..5231 | 1691679188.7184942-UTR-H-elongata_contig14607:5204..5231 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14607 5205..5231 + |
| 1622929868.831364-UTR-H-elongata_contig14607:6689..6773 | 1622929868.831364-UTR-H-elongata_contig14607:6689..6773 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14607 6690..6773 + |
| 1691679188.7423813-UTR-H-elongata_contig14607:6689..6773 | 1691679188.7423813-UTR-H-elongata_contig14607:6689..6773 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig14607 6690..6773 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929868.8079152-CDS-H-elongata_contig14607:5231..5596 | 1622929868.8079152-CDS-H-elongata_contig14607:5231..5596 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14607 5232..5596 + |
| 1691679188.7277486-CDS-H-elongata_contig14607:5231..5596 | 1691679188.7277486-CDS-H-elongata_contig14607:5231..5596 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14607 5232..5596 + |
| 1622929868.8188608-CDS-H-elongata_contig14607:5938..6689 | 1622929868.8188608-CDS-H-elongata_contig14607:5938..6689 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14607 5939..6689 + |
| 1691679188.734947-CDS-H-elongata_contig14607:5938..6689 | 1691679188.734947-CDS-H-elongata_contig14607:5938..6689 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig14607 5939..6689 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14607.3143.1 >prot_H-elongata_contig14607.3143.1 ID=prot_H-elongata_contig14607.3143.1|Name=mRNA_H-elongata_contig14607.3143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=372bp
MINVAKKKCASDGCLKRPSYGVAGSKKAEYCAVHTLEGMVDVVRKKCVGD
GCFKQPKYGVTGSKKAEYCAVHALDGMINVASKKCAGDGCLKQPKYGVTG
SKKGEYFGVHALEGMVDVVNKRCVDYGCLKQPTYGVAGSKKAEYCAVHAL
DGMISVVSKKCAGDGCLKRPRYGVARSNKPEYCAVHALKGMVNVVDKMCY
SDGCWNHPSYGVAGSKKAEYCSAHALEGMPNVASKMRSGKGYLKLPVDGV
SGITKAEFCTVHPLEGMDKAHIACSSVGCIKRASYSVASNKKPEYCALHP
LEGMIDIAIQRFGGDISAVKNQANSRKRMPETAAREISVLERESTTTFKR
PCCNAVSDTERVKIEVPLSLS* back to topmRNA from alignment at H-elongata_contig14607:5205..6773+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig14607.3143.1 ID=mRNA_H-elongata_contig14607.3143.1|Name=mRNA_H-elongata_contig14607.3143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1569bp|location=Sequence derived from alignment at H-elongata_contig14607:5205..6773+ (Himanthalia elongata Himel1 dioecious)
GTGAGCAAGAGGCGTTCTGGTAATGGGATGATAAACGTCGCGAAAAAGAA
GTGTGCTAGTGATGGGTGTTTAAAGCGACCGAGTTATGGTGTAGCCGGCA
GCAAGAAAGCGGAATACTGCGCAGTGCATACTTTGGAAGGGATGGTCGAC
GTTGTGAGGAAGAAGTGTGTTGGTGATGGATGTTTTAAGCAGCCGAAGTA
TGGCGTGACTGGCAGCAAAAAAGCGGAATACTGTGCAGTGCATGCTCTAG
ATGGGATGATCAATGTCGCGAGCAAGAAGTGTGCTGGTGATGGGTGTTTA
AAGCAACCGAAGTATGGCGTGACTGGCAGCAAAAAAGGGGAATACTTCGG
AGTTCATGCTTTGGAAGGGATGGTCGACGTTGTGAACAAGAGGTGTGTTG
ATTATGGATGTTTAAAGCAACCGACGTATGGCGTGGCTGGCAGCAAAAAA
GCGGAATACTGTGCAGTGCATGCTTTGGAAGGGATGTTCGACGTAGTGAA
GAAGAGGTGTGCTGGTGATGGATGTGGAAAGCAACCGAGTTATGGCGTGG
CTGGCAGCAAGAAGGCAGAATATTGCGTAGTGCATGCTTTGGAAGGGATG
GTCGACGTCGTGAGCAAGAAGTGTGTTGTTGATGGATGTTTAAAACGACC
GGGGTATGGCGTGGCTGGCAGAAAGAAAGCGGAATACTGTGCAGTGCATG
CTTTGAGAGGGATGGTCGACGTTGTAAACAAGAGGTGTGTTGATTATGGA
TGTTTAAAGCAACCGACGTATGGCGTGGCTGGCAGCAAAAAAGCGGAATA
CTGTGCAGTGCATGCCCTAGATGGGATGATCAGCGTCGTGAGCAAGAAGT
GTGCTGGTGATGGGTGCTTAAAGCGACCGAGGTATGGCGTGGCCAGAAGC
AATAAACCGGAATATTGCGCGGTGCATGCATTGAAAGGAATGGTCAACGT
TGTGGACAAAATGTGTTATAGTGATGGATGCTGGAATCATCCGAGTTATG
GCGTGGCCGGCAGCAAAAAGGCGGAATATTGTTCGGCGCATGCTTTGGAG
GGGATGCCCAACGTTGCGAGCAAGATGCGTTCTGGTAAAGGATACCTTAA
GCTACCAGTTGATGGCGTGTCCGGCATTACCAAAGCAGAATTTTGCACGG
TGCATCCTTTGGAAGGGATGGACAAAGCACACATTGCGTGTTCTAGCGTT
GGATGTATTAAGCGTGCAAGCTACAGCGTAGCAAGCAACAAGAAGCCGGA
GTACTGCGCGTTGCATCCTTTGGAAGGGATGATCGACATTGCGATCCAGA
GGTTTGGTGGTGATATTTCAGCTGTAAAAAATCAAGCTAATAGTAGGAAG
CGAATGCCCGAGACTGCTGCACGAGAAATTTCTGTTTTAGAAAGAGAAAG
TACGACTACGTTTAAGCGCCCCTGTTGTAATGCAGTATCAGATACAGAGA
GAGTGAAAATTGAAGTGCCCCTATCTCTGTCCTAGTGTATAACTTGTTTG
ATCTGGTTAAGGTTAAAAAACAAAAAAGCGAATCCTTCTTGCGCGTAAGC
TCAGTTAGTAACTCCATAC back to topCoding sequence (CDS) from alignment at H-elongata_contig14607:5205..6773+ >mRNA_H-elongata_contig14607.3143.1 ID=mRNA_H-elongata_contig14607.3143.1|Name=mRNA_H-elongata_contig14607.3143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2232bp|location=Sequence derived from alignment at H-elongata_contig14607:5205..6773+ (Himanthalia elongata Himel1 dioecious)
ATGATAAACGTCGCGAAAAAGAAGTGTGCTAGTGATGGGTGTTTAAAGCG
ACCGAGTTATGGTGTAGCCGGCAGCAAGAAAGCGGAATACTGCGCAGTGC
ATACTTTGGAAGGGATGGTCGACGTTGTGAGGAAGAAGTGTGTTGGTGAT
GGATGTTTTAAGCAGCCGAAGTATGGCGTGACTGGCAGCAAAAAAGCGGA
ATACTGTGCAGTGCATGCTCTAGATGGGATGATCAATGTCGCGAGCAAGA
AGTGTGCTGGTGATGGGTGTTTAAAGCAACCGAAGTATGGCGTGACTGGC
AGCAAAAAAGGGGAATACTTCGGAGTTCATGCTTTGGAAGGGATGGTCGA
CGTTGTGAACAAGAGATGATAAACGTCGCGAAAAAGAAGTGTGCTAGTGA
TGGGTGTTTAAAGCGACCGAGTTATGGTGTAGCCGGCAGCAAGAAAGCGG
AATACTGCGCAGTGCATACTTTGGAAGGGATGGTCGACGTTGTGAGGAAG
AAGTGTGTTGGTGATGGATGTTTTAAGCAGCCGAAGTATGGCGTGACTGG
CAGCAAAAAAGCGGAATACTGTGCAGTGCATGCTCTAGATGGGATGATCA
ATGTCGCGAGCAAGAAGTGTGCTGGTGATGGGTGTTTAAAGCAACCGAAG
TATGGCGTGACTGGCAGCAAAAAAGGGGAATACTTCGGAGTTCATGCTTT
GGAAGGGATGGTCGACGTTGTGAACAAGAGGTGTGTTGATTATGGATGTT
TAAAGCAACCGACGTATGGCGTGGCTGGCAGCAAAAAAGCGGAATACTGT
GCAGTGCATGCCCTAGATGGGATGATCAGCGTCGTGAGCAAGAAGTGTGC
TGGTGATGGGTGCTTAAAGCGACCGAGGTATGGCGTGGCCAGAAGCAATA
AACCGGAATATTGCGCGGTGCATGCATTGAAAGGAATGGTCAACGTTGTG
GACAAAATGTGTTATAGTGATGGATGCTGGAATCATCCGAGTTATGGCGT
GGCCGGCAGCAAAAAGGCGGAATATTGTTCGGCGCATGCTTTGGAGGGGA
TGCCCAACGTTGCGAGCAAGATGCGTTCTGGTAAAGGATACCTTAAGCTA
CCAGTTGATGGCGTGTCCGGCATTACCAAAGCAGAATTTTGCACGGTGCA
TCCTTTGGAAGGGATGGACAAAGCACACATTGCGTGTTCTAGCGTTGGAT
GTATTAAGCGTGCAAGCTACAGCGTAGCAAGCAACAAGAAGCCGGAGTAC
TGCGCGTTGCATCCTTTGGAAGGGATGATCGACATTGCGATCCAGAGGTT
TGGTGGTGATATTTCAGCTGTAAAAAATCAAGCTAATAGTAGGAAGCGAA
TGCCCGAGACTGCTGCACGAGAAATTTCTGTTTTAGAAAGAGAAAGTACG
ACTACGTTTAAGCGCCCCTGTTGTAATGCAGTATCAGATACAGAGAGAGT
GAAAATTGAAGTGCCCCTATCTCTGTCCTAGGTGTGTTGATTATGGATGT
TTAAAGCAACCGACGTATGGCGTGGCTGGCAGCAAAAAAGCGGAATACTG
TGCAGTGCATGCCCTAGATGGGATGATCAGCGTCGTGAGCAAGAAGTGTG
CTGGTGATGGGTGCTTAAAGCGACCGAGGTATGGCGTGGCCAGAAGCAAT
AAACCGGAATATTGCGCGGTGCATGCATTGAAAGGAATGGTCAACGTTGT
GGACAAAATGTGTTATAGTGATGGATGCTGGAATCATCCGAGTTATGGCG
TGGCCGGCAGCAAAAAGGCGGAATATTGTTCGGCGCATGCTTTGGAGGGG
ATGCCCAACGTTGCGAGCAAGATGCGTTCTGGTAAAGGATACCTTAAGCT
ACCAGTTGATGGCGTGTCCGGCATTACCAAAGCAGAATTTTGCACGGTGC
ATCCTTTGGAAGGGATGGACAAAGCACACATTGCGTGTTCTAGCGTTGGA
TGTATTAAGCGTGCAAGCTACAGCGTAGCAAGCAACAAGAAGCCGGAGTA
CTGCGCGTTGCATCCTTTGGAAGGGATGATCGACATTGCGATCCAGAGGT
TTGGTGGTGATATTTCAGCTGTAAAAAATCAAGCTAATAGTAGGAAGCGA
ATGCCCGAGACTGCTGCACGAGAAATTTCTGTTTTAGAAAGAGAAAGTAC
GACTACGTTTAAGCGCCCCTGTTGTAATGCAGTATCAGATACAGAGAGAG
TGAAAATTGAAGTGCCCCTATCTCTGTCCTAG back to top
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