mRNA_H-elongata_contig145975.3139.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 115 bits (289), Expect = 2.570e-28 Identity = 66/178 (37.08%), Postives = 107/178 (60.11%), Query Frame = 1
Query: 10 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
+L Y+ RT DLGI + G G + V ADY + RRSVS G VM GG +SWFSR K +++E+EYV+LA+++ E+ FLRQV+ + + I + EDN+GA + A+N S+ ++H++++HH +R+ + + + +V S QHAD LT +++ FE H +++
Sbjct: 76 ILGYVVRTSDLGITFRRGSVAGLS--MEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDFECHRNYVM 251
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 117 bits (293), Expect = 7.460e-28 Identity = 68/178 (38.20%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 10 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
+L Y+ RT DLGI + G G + V ADY + RRSVS G VM GG ISWFSR K +++E+EYV+LA+++ E+ FLRQV M + I + EDN+GA + A+N S+ ++H++++HH +R+ + + + +V S QHAD LT ++ FE H +++
Sbjct: 260 ILGYVVRTSDLGITFRRGSVAGLSMEVFV--DADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVM 435
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 117 bits (293), Expect = 2.400e-27 Identity = 68/178 (38.20%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 10 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
+L Y+ RT DLGI + G G + V ADY + RRSVS G VM GG ISWFSR K +++E+EYV+LA+++ E+ FLRQV M + I + EDN+GA + A+N S+ ++H++++HH +R+ + + + +V S QHAD LT ++ FE H +++
Sbjct: 434 ILGYVVRTSDLGITFRRGSVAGLSMEVFV--DADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDFEFHRNYVM 609
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.090e-26 Identity = 67/178 (37.64%), Postives = 105/178 (58.99%), Query Frame = 1
Query: 10 VLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
+L Y+ RT DLGI + G G + V ADY + RRSVS G VM GG ISWFSR K +++E+EYV+LA+++ E+ FLRQV M + I + EDN+GA + A+N S+ ++H++++HH +R+ + + + +V S QHA+ LT ++ FE H +++
Sbjct: 955 ILGYVVRTSDLGITFRRGSVAGLSMEVFV--DADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDFEFHRNYVM 1130
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.390e-26 Identity = 68/182 (37.36%), Postives = 111/182 (60.99%), Query Frame = 1
Query: 1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV--AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
A ++L Y RT GI + G G+ + V +ADY + RRSVS G VM +GGAI+WFS+ K +++++EYVA+A+M E+ FLRQV M LP ++ I ++EDNEGA + A++ S+ ++H++++HH +R ++ V + +V S QHAD LT ++ + F H +++
Sbjct: 255 ALSILGYAVRTSSFGISFQSGTVSGFSLITFV--NADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADFLTKALPEREFVFHRDYVM 433
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.850e-26 Identity = 69/182 (37.91%), Postives = 110/182 (60.44%), Query Frame = 1
Query: 1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV--AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
A ++L Y +RT LGI + G G+ + V ADY + RRSVS G VM +GGAI+WFS+ ++++SEYVA+A+M E+ FLRQV M LP ++ I ++EDNEGA + A++ S ++H++++HH +R ++ V + +V S QHAD LT ++ + F H +++
Sbjct: 574 ALSILGYAFRTSSLGISFQRGTVSGFTLIAFV--DADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPISKSNSKHIDVRHHFLRQLVDEKEVELIHVASKYQHADFLTKALPEREFVSHRDYVM 752
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.860e-26 Identity = 67/181 (37.02%), Postives = 102/181 (56.35%), Query Frame = 1
Query: 1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
A +L Y RT GI + G G+ + AD+ + RRSVS G V GGA+SWFSR K +++E+EYVAL E+V + FLRQ+ M + + I + EDN+GA + A+N S+ ++H++++HH +R+ +E + V +V S Q AD LT S+ FE H F++
Sbjct: 35 AMDILGYARRTSHFGISFQRGTVEGFS--LQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDAFESHRDFVM 213
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 110 bits (275), Expect = 5.580e-26 Identity = 64/181 (35.36%), Postives = 105/181 (58.01%), Query Frame = 1
Query: 1 AAAVLQYLWRTRDLGIIYV-GEPGGWDQVISVGRHADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
A +L Y+ RT +GI + G G + V ADY + RRSVS G VM GG ++WFSR K +++E+EYVA+A+++ E+ FLRQV M + I + EDN+GA + A N ++ ++H++++HH +R+ +E + + V + QHAD LT ++ ++F H F++
Sbjct: 140 ALGILGYVRRTSWMGITFERGVVTGMSMQVFV--DADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDFVM 318
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5KIJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 6.300e-26 Identity = 58/146 (39.73%), Postives = 91/146 (62.33%), Query Frame = 1
Query: 103 ADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
AD+ + RRSVS G V GG++SWFSR K +++E+EYVAL ++V E+ FLRQ+ M + + I I EDN+GA + A+N S+ ++H++++HH +R+ +E + V +V S Q AD LT S+ +FE H F++
Sbjct: 79 ADFASKAANRRSVSGGIVTCGGGSVSWFSRTQKCVTLSTTEAEYVALGDVVKEIIFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLSKDSFESHREFVM 224
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Match: A0A6H5JUW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW6_9PHAE) HSP 1 Score: 107 bits (267), Expect = 8.550e-26 Identity = 58/146 (39.73%), Postives = 90/146 (61.64%), Query Frame = 1
Query: 103 ADYGTWPDTRRSVSEGAVMMSGGAISWFSRVPKVAAAASSESEYVALAEMVNELRFLRQVKEVMTLPIDV-AIKIHEDNEGATKTARNRFSSRRTRHVEIKHHIVRDAIEGGLVHVEYVRSGEQHADILTNSVDVKTFEKHARFLL 537
AD+ + RRSVS G V GGA+SWFSR K +++E+EYVAL ++V E+ FLRQ+ M + + I + EDN+GA + A+N S+ ++H++++HH +R+ +E + V +V S Q AD LT S+ FE H F++
Sbjct: 63 ADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSLPKDAFESHRDFVM 208 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145975.3139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig145975.3139.1 >prot_H-elongata_contig145975.3139.1 ID=prot_H-elongata_contig145975.3139.1|Name=mRNA_H-elongata_contig145975.3139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp AAAVLQYLWRTRDLGIIYVGEPGGWDQVISVGRHADYGTWPDTRRSVSEGback to top mRNA from alignment at H-elongata_contig145975:772..1308+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig145975.3139.1 ID=mRNA_H-elongata_contig145975.3139.1|Name=mRNA_H-elongata_contig145975.3139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig145975:772..1308+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig145975:772..1308+ >mRNA_H-elongata_contig145975.3139.1 ID=mRNA_H-elongata_contig145975.3139.1|Name=mRNA_H-elongata_contig145975.3139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig145975:772..1308+ (Himanthalia elongata Himel1 dioecious)back to top |