mRNA_H-elongata_contig145944.3137.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig145944.3137.1
Unique NamemRNA_H-elongata_contig145944.3137.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A6H5L064_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L064_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 2.070e-55
Identity = 87/94 (92.55%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 QVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQV 282
            QVRVVMDQLY LQDYGGLKLLYITPEKFCRSPSM +ALQRLHS+GLLSRFVIDEAHCVSDWGHDFRPDYL LGILRK+FPDVPIMALTATAN V
Sbjct:  102 QVRVVMDQLYRLQDYGGLKLLYITPEKFCRSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTV 195
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: D7FR28_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR28_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.560e-51
Identity = 86/94 (91.49%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    1 QVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQV 282
            +VRVVMDQLY LQDYGGLKLLYITPEKFCRSPSM +ALQRLHS+GLLSRFVIDEAHCVSDWGHDFRPDYL LGILRK+FPDVPIMALTATAN V
Sbjct:  671 EVRVVMDQLYRLQDYGGLKLLYITPEKFCRSPSMNKALQRLHSKGLLSRFVIDEAHCVSDWGHDFRPDYLKLGILRKDFPDVPIMALTATANTV 764
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BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: W7U038_9STRA (Dna helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U038_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.670e-41
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    7 RVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            R +MD+LYHL  +G LKLLYITPEKF RS +M++ LQRL  RGLL+RFVIDEAHC+S WGHDFRPDYL L  +R +FP +PIMALTATANQ
Sbjct:   97 REIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQ 187
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A4D9D6D9_9STRA (DNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6D9_9STRA)

HSP 1 Score: 143 bits (361), Expect = 8.800e-38
Identity = 65/91 (71.43%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    7 RVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            R +MD+LYHL  +G LKLLYITPEKF RS +M++ LQRL  RGLL+RFVIDEAHC+S WGHDFRPDYL L  +R +FP +PIMALTATANQ
Sbjct:  569 REIMDRLYHLPAHGSLKLLYITPEKFARSDAMVKCLQRLKDRGLLARFVIDEAHCISQWGHDFRPDYLMLRSIRDKFPSIPIMALTATANQ 659
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A7S1XRC4_9STRA (DNA helicase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRC4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 4.940e-36
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:   13 VMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            VM QLY L ++GG+KLLYITPEK   S S+ R LQRL  RGLLSRFV+DEAHC+S WGHDFRPDYL L  LR++FP VPIMALTATA++
Sbjct:  207 VMTQLYQLPEHGGMKLLYITPEKLAHSESLNRVLQRLSERGLLSRFVVDEAHCMSQWGHDFRPDYLQLRTLRQKFPRVPIMALTATASE 295
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A836CQM3_9STRA (DNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQM3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 4.360e-35
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:    1 QVRVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            ++  VMD+LY L  +GGLKLLYITPEK  +S ++ + L+RL+ RGLLSRFVIDEAHC+SDWGHDFRPDYL L  LR+++P VPIMALTATA++
Sbjct:  386 EIAPVMDELYQLPPFGGLKLLYITPEKLDKSGAIKQVLRRLYERGLLSRFVIDEAHCLSDWGHDFRPDYLKLDSLRRDYPKVPIMALTATADK 478
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A7S2URF3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URF3_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.620e-34
Identity = 59/87 (67.82%), Postives = 74/87 (85.06%), Query Frame = 1 
Query:   22 QLYHLQDYGGLKLLYITPEKFCRSPSMIRA-LQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            +L+   D+GG+KL YITPEK  R+ SMIR+ LQ+L+ + LLSRFV+DEAHC+SDWGHDFRPDY  LG LR++FP+VPIMALTATAN+
Sbjct:    5 RLFATPDHGGVKLFYITPEKL-RASSMIRSILQKLYDQNLLSRFVVDEAHCLSDWGHDFRPDYNQLGGLRRDFPNVPIMALTATANE 90
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A7S0KZB9_9STRA (DNA helicase (Fragment) n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0KZB9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.600e-32
Identity = 54/91 (59.34%), Postives = 72/91 (79.12%), Query Frame = 1 
Query:    7 RVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            R +  +L+    +GG+KLLYITPEK   S  +   L+RL+ R L+SRFV+DEAHC+SDWGHDFRPDY  LG+LR+++P+VP+MALTATAN+
Sbjct:   16 RDIQRRLFETTHHGGVKLLYITPEKLRHSGVIQNVLKRLYERQLISRFVVDEAHCLSDWGHDFRPDYNQLGVLRQQYPNVPLMALTATANE 106
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A7S4W4N3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4N3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.370e-31
Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    7 RVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            R ++ +L ++  +GG+KLLYITPEK   S  +   + +L++RG+LSRFV+DEAHC+SDWGHDFRPDY  LG LR ++P+VP+MALTATAN+
Sbjct:  229 RDILRRLDNVSSHGGIKLLYITPEKLRHSGMIKSVMTKLYNRGMLSRFVVDEAHCLSDWGHDFRPDYNQLGCLRSDYPNVPMMALTATANE 319
[Close]
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Match: A0A7S4SDG2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SDG2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 3.330e-31
Identity = 53/91 (58.24%), Postives = 73/91 (80.22%), Query Frame = 1 
Query:    7 RVVMDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEAHCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQ 279
            R ++ +L ++  +GG+KLLYITPEK   S  +   + +L++RG+LSRFV+DEAHC+SDWGHDFRPDY  LG LR ++P+VP+MALTATAN+
Sbjct:  131 RDILRRLDNVSSHGGIKLLYITPEKLRHSGMIKSVMTKLYNRGMLSRFVVDEAHCLSDWGHDFRPDYNQLGCLRSDYPNVPMMALTATANE 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig145944.3137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L064_9PHAE2.070e-5592.55DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FR28_ECTSI1.560e-5191.49DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
W7U038_9STRA1.670e-4171.43Dna helicase n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A4D9D6D9_9STRA8.800e-3871.43DNA helicase n=1 Tax=Nannochloropsis salina CCMP17... [more]
A0A7S1XRC4_9STRA4.940e-3670.79DNA helicase (Fragment) n=1 Tax=Phaeomonas parva T... [more]
A0A836CQM3_9STRA4.360e-3566.67DNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2URF3_9STRA2.620e-3467.82Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S0KZB9_9STRA2.600e-3259.34DNA helicase (Fragment) n=1 Tax=Asterionellopsis g... [more]
A0A7S4W4N3_9STRA2.370e-3158.24Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S4SDG2_9STRA3.330e-3158.24Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig145944contigH-elongata_contig145944:449..1494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1e-41
Seed eggNOG ortholog2880.D7FR28
KEGG koko:K03654,ko:K10901
KEGG Pathwayko03018,ko03440,ko03460,map03018,map03440,map03460
KEGG ModuleM00295,M00414
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig145944.3137.1prot_H-elongata_contig145944.3137.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig145944 449..1479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.214716-CDS-H-elongata_contig145944:448..5511622929868.214716-CDS-H-elongata_contig145944:448..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145944 449..551 -
1691679188.4697752-CDS-H-elongata_contig145944:448..5511691679188.4697752-CDS-H-elongata_contig145944:448..551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145944 449..551 -
1622929868.2287974-CDS-H-elongata_contig145944:945..10321622929868.2287974-CDS-H-elongata_contig145944:945..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145944 946..1032 -
1691679188.4837143-CDS-H-elongata_contig145944:945..10321691679188.4837143-CDS-H-elongata_contig145944:945..1032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145944 946..1032 -
1622929868.247009-CDS-H-elongata_contig145944:1402..14791622929868.247009-CDS-H-elongata_contig145944:1402..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145944 1403..1479 -
1691679188.493483-CDS-H-elongata_contig145944:1402..14791691679188.493483-CDS-H-elongata_contig145944:1402..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig145944 1403..1479 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929868.2648146-UTR-H-elongata_contig145944:1479..14941622929868.2648146-UTR-H-elongata_contig145944:1479..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145944 1480..1494 -
1691679188.5045018-UTR-H-elongata_contig145944:1479..14941691679188.5045018-UTR-H-elongata_contig145944:1479..1494Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig145944 1480..1494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig145944.3137.1

>prot_H-elongata_contig145944.3137.1 ID=prot_H-elongata_contig145944.3137.1|Name=mRNA_H-elongata_contig145944.3137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MDQLYHLQDYGGLKLLYITPEKFCRSPSMIRALQRLHSRGLLSRFVIDEA
HCVSDWGHDFRPDYLNLGILRKEFPDVPIMALTATANQV
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mRNA from alignment at H-elongata_contig145944:449..1494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig145944.3137.1 ID=mRNA_H-elongata_contig145944.3137.1|Name=mRNA_H-elongata_contig145944.3137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1046bp|location=Sequence derived from alignment at H-elongata_contig145944:449..1494- (Himanthalia elongata Himel1 dioecious)
CAGGTGCGAGTAGTGATGGATCAGCTATACCACTTGCAGGACTACGGCGG
GCTCAAACTGCTCTACATCACTCCGGAGAAGTTCTGCCGAAGGTGACGGT
TGAGGTTTGGTGTTCCTGCACGATGTACCACGGGTCGAAATGCCTAATTT
CTCCCGGCGCTTCTGTACACACCTGCCACCGCAAAACCGCCCCAAGCAGG
GCATCGAATCACGAGGCTGGGTCGCTTAGAGCTTCTCCCGGTGCGCGAGA
AGAGTACATTCCGGGTCTTCACCATTTTTATGGACGGCCGATCGCTTTCT
TTGGTCAGAAATATGGATCGATCCCCACTCGCTGTTGTAGTTAGTATATT
AGCTGATGTACCTGGAGCCCAATATGTTACCCGAATCGTTGTCATGCTTG
GGAGCATTTTTGCCTTGCCTCACCTTGTCTCTCCCTCCGTCTGCCCTCCC
CTATCAACATAGCCCGTCCATGATCCGGGCGCTGCAGCGGCTTCACTCGA
GGGGGCTGTTGTCCCGCTTCGTGATAGACGAGGCCCACTGCGTTAGCGAG
TAAGACAATCTTTCTCATGAAGCATTTGATCCTTCCCCTATCCCCGTTCC
CTCTTCAACACGTGCACAAAAAACGTTAACCTAGTAGGGAGCTTTTCCCA
CCCACCACCCACGAGTTGCAAAAGCCCCCGTTCAACCCGGACGCCATCCG
GGTTGCATGCTTGCGTTCCTGAGAGATGCAAGCGACGACGTTTCAGAGTA
TCTACTATATAATACTATATAATATATTTCCTTTAAAAATAAGATACTGA
GTGTAATACCAGCATTCCCTGTGCGCGTGCGAGTAAGCGAGCGCGATAGG
ATACAAAACGATCGACTGGCGGTACTACAGTATTTTTGATTGGGTCCCGA
TCTGTCGTTGTCGTGCGATTCGGGTCTCTTTTGCGATCGACAGCTGGGGC
CACGACTTTCGTCCGGACTACCTGAACCTCGGAATACTGCGAAAGGAGTT
CCCGGACGTGCCGATCATGGCCTTGACAGCGACGGCCAACCAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig145944:449..1494-

>mRNA_H-elongata_contig145944.3137.1 ID=mRNA_H-elongata_contig145944.3137.1|Name=mRNA_H-elongata_contig145944.3137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig145944:449..1494- (Himanthalia elongata Himel1 dioecious)
ATGGATCAGCTATACCACTTGCAGGACTACGGCGGGCTCAAACTGCTCTA
CATCACTCCGGAGAAGTTCTGCCGAAGATGGATCAGCTATACCACTTGCA
GGACTACGGCGGGCTCAAACTGCTCTACATCACTCCGGAGAAGTTCTGCC
GAAGCCCGTCCATGATCCGGGCGCTGCAGCGGCTTCACTCGAGGGGGCTG
TTGTCCCGCTTCGTGATAGACGAGGCCCACTGCGTTAGCGACCCGTCCAT
GATCCGGGCGCTGCAGCGGCTTCACTCGAGGGGGCTGTTGTCCCGCTTCG
TGATAGACGAGGCCCACTGCGTTAGCGACTGGGGCCACGACTTTCGTCCG
GACTACCTGAACCTCGGAATACTGCGAAAGGAGTTCCCGGACGTGCCGAT
CATGGCCTTGACAGCGACGGCCAACCAGGTTCTGGGGCCACGACTTTCGT
CCGGACTACCTGAACCTCGGAATACTGCGAAAGGAGTTCCCGGACGTGCC
GATCATGGCCTTGACAGCGACGGCCAACCAGGTT
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